MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.05-27-g5d88558d2aef) initialized Starting run at 05:37:38 UTC on 2022-05-24. Successfully read inputs file ... Castro git describe: 22.05-29-gf507f242f AMReX git describe: 22.05-27-g5d88558d2 Microphysics git describe: 22.05-1-g39742967 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014322654 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.358182058 [STEP 1] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.337155273 [STEP 2] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.334133014 [STEP 3] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.33453693 [STEP 4] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.334452209 [STEP 5] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.339267221 [STEP 6] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.330555598 [STEP 7] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.330048693 [STEP 8] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.330482583 [STEP 9] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.330566423 [STEP 10] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009764835 seconds Ending run at 05:37:41 UTC on 2022-05-24. Run time = 3.554957618 Run time without initialization = 3.375235498 Average number of zones advanced per microsecond: 0.777 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.553 ... 3.555 ... 3.555 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.0798 2.3439 2.4404 68.65% Castro::do_advance_ctu() 10 0.03685 0.1359 0.4025 11.32% Gravity::make_radial_gravity() 21 0.3403 0.3549 0.383 10.77% FabArray::ParallelCopy_finish() 41 0.032 0.05485 0.1224 3.44% Castro::initData() 1 0.03856 0.07961 0.116 3.26% Castro::estTimeStep() 21 0.0198 0.0608 0.09858 2.77% FabArray::setVal() 143 0.05395 0.06955 0.07457 2.10% Castro::reset_internal_energy(Fab) 1008 0.04616 0.04943 0.05218 1.47% FabArray::ParallelCopy_nowait() 41 0.02619 0.04318 0.04852 1.36% StateData::FillBoundary(geom) 41 0.03624 0.04247 0.04702 1.32% Castro::normalize_species() 62 0.03948 0.04184 0.04383 1.23% FillPatchIterator::Initialize 41 0.01961 0.03189 0.0363 1.02% Gravity::interpolate_monopole_grav() 21 0.02616 0.02741 0.02802 0.79% Castro::construct_new_gravity_source() 10 0.01724 0.02263 0.02426 0.68% Castro::expand_state() 10 0.009566 0.01883 0.02307 0.65% Castro::computeTemp() 63 0.01737 0.01872 0.01987 0.56% Castro::initialize_do_advance() 10 0.00834 0.0162 0.01865 0.52% MultiFab::Saxpy() 20 0.008504 0.01429 0.01624 0.46% FabArray::setDomainBndry() 41 0.00509 0.01181 0.0149 0.42% VisMF::Write(FabArray) 2 0.01094 0.01184 0.01454 0.41% Amr::writePlotFile() 2 0.009782 0.01274 0.01403 0.39% Gravity::get_new_grav_vector() 11 0.00847 0.01134 0.01279 0.36% MultiFab::contains_nan() 20 0.009544 0.01098 0.01232 0.35% Castro::construct_old_gravity_source() 10 0.004806 0.01001 0.01166 0.33% Castro::initialize_advance() 10 0.01081 0.01125 0.01164 0.33% Gravity::get_old_grav_vector() 10 0.005455 0.009433 0.01074 0.30% Castro::enforce_min_density() 62 0.005842 0.006642 0.007143 0.20% Castro::construct_new_source() 50 0.004821 0.006505 0.007096 0.20% Castro::initMFs() 1 0.005378 0.005823 0.006522 0.18% main() 1 0.003523 0.004918 0.005445 0.15% StateData::define() 4 0.004433 0.00465 0.005018 0.14% Castro::swap_state_time_levels() 10 0.002624 0.003546 0.003838 0.11% Amr::coarseTimeStep() 10 0.0007828 0.001666 0.003048 0.09% Castro::buildMetrics() 1 0.001256 0.001336 0.001478 0.04% Castro::finalize_do_advance() 10 0.0005413 0.001106 0.001295 0.04% Amr::timeStep() 10 0.0001635 0.0002175 0.000488 0.01% Amr::InitAmr() 1 0.0002633 0.0002918 0.0004267 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002988 0.0003097 0.000331 0.01% Castro::clean_state() 62 0.0001311 0.0001663 0.0001969 0.01% StateDataPhysBCFunct::() 41 0.0001137 0.0001427 0.0001742 0.00% DistributionMapping::LeastUsedCPUs() 1 9.072e-06 0.0001435 0.0001722 0.00% Castro::enforce_consistent_e() 1 8.156e-05 8.956e-05 0.0001023 0.00% Castro::Castro() 1 5.367e-05 6.929e-05 0.0001009 0.00% FabArray::ParallelCopy() 41 5.899e-05 7.504e-05 9.297e-05 0.00% Castro::construct_old_source() 50 3.864e-05 7.523e-05 9.296e-05 0.00% FillPatchSingleLevel 41 6.435e-05 7.218e-05 8.052e-05 0.00% Castro::do_old_sources() 10 3.842e-05 6.288e-05 7.964e-05 0.00% Castro::do_new_sources() 10 3.817e-05 6.491e-05 7.712e-05 0.00% Castro::subcycle_advance_ctu() 10 3.845e-05 6.125e-05 7.486e-05 0.00% Castro::construct_old_gravity() 10 3.41e-05 5.291e-05 7.411e-05 0.00% Amr::writeSmallPlotFile() 1 2.538e-05 4.585e-05 6.969e-05 0.00% Castro::advance() 10 3.082e-05 4.41e-05 6.49e-05 0.00% Amr::FinalizeInit() 1 3.794e-06 1.229e-05 6.428e-05 0.00% FabArrayBase::getCPC() 41 4.115e-05 5.189e-05 6.363e-05 0.00% Castro::finalize_advance() 10 4.492e-05 5.084e-05 5.582e-05 0.00% Castro::apply_source_to_state() 20 3.811e-05 4.904e-05 5.555e-05 0.00% Castro::construct_new_gravity() 10 3.768e-05 4.468e-05 5.548e-05 0.00% FabArrayBase::CPC::define() 2 2.306e-05 2.65e-05 3.378e-05 0.00% Amr::defBaseLevel() 1 2.235e-05 2.739e-05 3.299e-05 0.00% Castro::enforce_speed_limit() 62 2.302e-05 2.839e-05 3.295e-05 0.00% Castro::check_for_nan() 20 2.091e-05 2.654e-05 3.054e-05 0.00% Castro::post_timestep() 10 1.1e-05 1.672e-05 2.617e-05 0.00% Castro::post_init() 1 8.284e-06 1.071e-05 1.742e-05 0.00% Gravity::set_mass_offset() 10 6.606e-06 1.07e-05 1.686e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.29e-05 1.457e-05 1.675e-05 0.00% Castro::create_source_corrector() 10 7.102e-06 1.091e-05 1.5e-05 0.00% Gravity::swapTimeLevels() 10 6.539e-06 1.078e-05 1.419e-05 0.00% Castro::FluxRegCrseInit 10 7.01e-06 9.132e-06 1.181e-05 0.00% Castro::computeNewDt() 9 7.36e-06 9.582e-06 1.177e-05 0.00% Amr::initSubcycle() 1 8.138e-06 8.658e-06 9.437e-06 0.00% Amr::InitializeInit() 1 2.017e-06 3.419e-06 8.058e-06 0.00% Castro::retry_advance_ctu() 10 4.32e-06 5.557e-06 7.197e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.921e-06 4.454e-06 5.424e-06 0.00% Castro::computeInitialDt() 2 3.075e-06 4.242e-06 5.4e-06 0.00% Castro::post_regrid() 1 2.04e-06 3.636e-06 5.35e-06 0.00% Amr::init() 1 1.697e-06 2.183e-06 2.579e-06 0.00% Castro::FluxRegFineAdd() 10 1.798e-06 2.201e-06 2.439e-06 0.00% Amr::initialInit() 1 1.127e-06 1.51e-06 1.725e-06 0.00% DistributionMapping::Distribute() 1 8.9e-07 1.061e-06 1.248e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.553 3.555 3.555 100.00% Amr::coarseTimeStep() 10 3.36 3.36 3.36 94.52% Amr::timeStep() 10 3.349 3.35 3.351 94.27% Castro::advance() 10 3.334 3.334 3.335 93.80% Castro::subcycle_advance_ctu() 10 3.257 3.263 3.274 92.10% Castro::do_advance_ctu() 10 3.257 3.263 3.274 92.10% Castro::construct_ctu_hydro_source() 10 2.08 2.344 2.44 68.65% Gravity::make_radial_gravity() 21 0.3403 0.3549 0.383 10.77% Castro::construct_old_gravity() 10 0.2029 0.2153 0.2371 6.67% Gravity::get_old_grav_vector() 10 0.2021 0.2144 0.2365 6.65% Gravity::get_new_grav_vector() 11 0.2275 0.2293 0.2304 6.48% FillPatchIterator::Initialize 41 0.1721 0.1846 0.2099 5.90% Castro::construct_new_gravity() 10 0.202 0.2032 0.2043 5.75% FillPatchSingleLevel 41 0.1215 0.1409 0.1852 5.21% Amr::init() 1 0.1792 0.1793 0.1793 5.04% Castro::initialize_do_advance() 10 0.1579 0.1673 0.1731 4.87% Amr::initialInit() 1 0.1642 0.1646 0.1651 4.64% FabArray::ParallelCopy() 41 0.07914 0.09818 0.1487 4.18% Amr::InitializeInit() 1 0.05663 0.09821 0.1353 3.81% Amr::defBaseLevel() 1 0.05663 0.09821 0.1353 3.81% Castro::expand_state() 10 0.108 0.1203 0.1284 3.61% FabArray::ParallelCopy_finish() 41 0.032 0.05485 0.1224 3.44% Castro::clean_state() 62 0.1084 0.1162 0.1204 3.39% Castro::initData() 1 0.0428 0.08373 0.1197 3.37% Amr::FinalizeInit() 1 0.02919 0.06635 0.108 3.04% Castro::estTimeStep() 21 0.0198 0.0608 0.09858 2.77% Castro::computeInitialDt() 2 0.001692 0.03878 0.08039 2.26% Castro::initialize_advance() 10 0.05976 0.07178 0.07759 2.18% FabArray::setVal() 143 0.05395 0.06955 0.07457 2.10% Castro::computeTemp() 63 0.0639 0.06846 0.0718 2.02% Castro::do_new_sources() 10 0.05019 0.06232 0.06615 1.86% Castro::reset_internal_energy(MultiFab) 63 0.04647 0.04974 0.05249 1.48% Castro::reset_internal_energy(Fab) 1008 0.04616 0.04943 0.05218 1.47% Castro::do_old_sources() 10 0.03223 0.04555 0.04907 1.38% FabArray::ParallelCopy_nowait() 41 0.02628 0.04326 0.04859 1.37% StateDataPhysBCFunct::() 41 0.0364 0.04261 0.04719 1.33% StateData::FillBoundary(geom) 41 0.03624 0.04247 0.04702 1.32% Castro::normalize_species() 62 0.03948 0.04184 0.04383 1.23% Castro::construct_new_source() 50 0.02206 0.02914 0.0312 0.88% Gravity::interpolate_monopole_grav() 21 0.02616 0.02741 0.02802 0.79% Castro::post_init() 1 0.02641 0.02682 0.02741 0.77% Amr::writePlotFile() 2 0.02404 0.02458 0.02497 0.70% Castro::construct_new_gravity_source() 10 0.01724 0.02263 0.02426 0.68% Castro::post_timestep() 10 0.0147 0.0157 0.01633 0.46% Castro::apply_source_to_state() 20 0.008555 0.01434 0.0163 0.46% MultiFab::Saxpy() 20 0.008504 0.01429 0.01624 0.46% FabArray::setDomainBndry() 41 0.00509 0.01181 0.0149 0.42% VisMF::Write(FabArray) 2 0.01094 0.01184 0.01454 0.41% Castro::check_for_nan() 20 0.009568 0.01101 0.01235 0.35% MultiFab::contains_nan() 20 0.009544 0.01098 0.01232 0.35% Castro::construct_old_source() 50 0.004844 0.01008 0.01175 0.33% Castro::construct_old_gravity_source() 10 0.004806 0.01001 0.01166 0.33% Castro::Castro() 1 0.009098 0.009637 0.01047 0.29% Castro::computeNewDt() 9 0.007127 0.007135 0.007144 0.20% Castro::enforce_min_density() 62 0.005842 0.006642 0.007143 0.20% Castro::initMFs() 1 0.005378 0.005823 0.006522 0.18% AmrLevel::AmrLevel(dm) 1 0.00445 0.004665 0.005033 0.14% StateData::define() 4 0.004433 0.00465 0.005018 0.14% Castro::swap_state_time_levels() 10 0.002624 0.003546 0.003838 0.11% Castro::post_regrid() 1 0.001532 0.001641 0.001959 0.06% Castro::buildMetrics() 1 0.001375 0.001464 0.001618 0.05% Castro::finalize_do_advance() 10 0.0005413 0.001106 0.001295 0.04% Amr::InitAmr() 1 0.0002719 0.0003005 0.0004351 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.405e-05 0.000149 0.0001788 0.01% DistributionMapping::LeastUsedCPUs() 1 9.072e-06 0.0001435 0.0001722 0.00% Castro::enforce_consistent_e() 1 8.156e-05 8.956e-05 0.0001023 0.00% FabArrayBase::getCPC() 41 6.613e-05 7.839e-05 9.741e-05 0.00% Amr::writeSmallPlotFile() 1 2.538e-05 4.585e-05 6.969e-05 0.00% Castro::finalize_advance() 10 5.447e-05 6.217e-05 6.787e-05 0.00% FabArrayBase::CPC::define() 2 2.306e-05 2.65e-05 3.378e-05 0.00% Castro::enforce_speed_limit() 62 2.302e-05 2.839e-05 3.295e-05 0.00% Gravity::set_mass_offset() 10 6.606e-06 1.07e-05 1.686e-05 0.00% Castro::create_source_corrector() 10 7.102e-06 1.091e-05 1.5e-05 0.00% Gravity::swapTimeLevels() 10 6.539e-06 1.078e-05 1.419e-05 0.00% Castro::FluxRegCrseInit 10 7.01e-06 9.132e-06 1.181e-05 0.00% Amr::initSubcycle() 1 8.138e-06 8.658e-06 9.437e-06 0.00% Castro::retry_advance_ctu() 10 4.32e-06 5.557e-06 7.197e-06 0.00% Castro::FluxRegFineAdd() 10 1.798e-06 2.201e-06 2.439e-06 0.00% DistributionMapping::Distribute() 1 8.9e-07 1.061e-06 1.248e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.05-27-g5d88558d2aef) finalized