MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.05-29-g1305eb3d364d) initialized Starting run at 05:38:29 UTC on 2022-05-25. Successfully read inputs file ... Castro git describe: 22.05-32-g1070f4487 AMReX git describe: 22.05-29-g1305eb3d3 Microphysics git describe: 22.05-1-g39742967 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.01624342 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.345241093 [STEP 1] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.334900594 [STEP 2] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.334382495 [STEP 3] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.334604623 [STEP 4] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.341596808 [STEP 5] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.340679184 [STEP 6] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.33020887 [STEP 7] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.332007069 [STEP 8] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.332387174 [STEP 9] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.331978805 [STEP 10] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009881707 seconds Ending run at 05:38:32 UTC on 2022-05-25. Run time = 3.616488669 Run time without initialization = 3.373844189 Average number of zones advanced per microsecond: 0.777 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.614 ... 3.616 ... 3.617 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.0513 2.3289 2.4354 67.34% Castro::do_advance_ctu() 10 0.03418 0.1423 0.4223 11.68% Gravity::make_radial_gravity() 21 0.3479 0.3629 0.3945 10.91% Castro::initData() 1 0.03834 0.08776 0.1596 4.41% Castro::estTimeStep() 21 0.02425 0.1048 0.1534 4.24% FabArray::ParallelCopy_finish() 41 0.04303 0.06413 0.1296 3.58% FabArray::setVal() 143 0.05568 0.06689 0.06956 1.92% Castro::reset_internal_energy(Fab) 1008 0.04577 0.05049 0.05372 1.49% FabArray::ParallelCopy_nowait() 41 0.02519 0.04258 0.04802 1.33% StateData::FillBoundary(geom) 41 0.03523 0.04228 0.04648 1.29% Castro::normalize_species() 62 0.03937 0.04208 0.04403 1.22% FillPatchIterator::Initialize 41 0.02019 0.03248 0.03681 1.02% Gravity::interpolate_monopole_grav() 21 0.02621 0.02759 0.02856 0.79% Castro::construct_new_gravity_source() 10 0.01977 0.02327 0.0252 0.70% Castro::expand_state() 10 0.00954 0.01862 0.02183 0.60% Castro::computeTemp() 63 0.01699 0.01916 0.02046 0.57% Castro::initialize_do_advance() 10 0.009121 0.01672 0.02046 0.57% VisMF::Write(FabArray) 2 0.01193 0.01284 0.01661 0.46% MultiFab::Saxpy() 20 0.008641 0.01432 0.01625 0.45% FabArray::setDomainBndry() 41 0.005572 0.01185 0.01522 0.42% Amr::writePlotFile() 2 0.009704 0.01353 0.01521 0.42% Gravity::get_new_grav_vector() 11 0.007255 0.01118 0.01264 0.35% Castro::construct_old_gravity_source() 10 0.004969 0.01012 0.01193 0.33% MultiFab::contains_nan() 20 0.009517 0.01074 0.01169 0.32% Gravity::get_old_grav_vector() 10 0.005494 0.00929 0.01085 0.30% Castro::initialize_advance() 10 0.003236 0.008726 0.009965 0.28% Castro::initMFs() 1 0.005493 0.006386 0.009021 0.25% Castro::enforce_min_density() 62 0.005763 0.006738 0.00723 0.20% Castro::construct_new_source() 50 0.004631 0.006439 0.007004 0.19% StateData::define() 4 0.004553 0.005133 0.006802 0.19% Castro::swap_state_time_levels() 10 0.002868 0.004071 0.005629 0.16% main() 1 0.003247 0.004909 0.005356 0.15% Amr::coarseTimeStep() 10 0.000889 0.001826 0.003523 0.10% Castro::buildMetrics() 1 0.001287 0.001467 0.001967 0.05% Castro::finalize_do_advance() 10 0.0005403 0.001045 0.001241 0.03% Amr::InitAmr() 1 0.0002595 0.0003273 0.000453 0.01% Amr::timeStep() 10 0.0001651 0.000216 0.000444 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0003038 0.0003153 0.0003368 0.01% DistributionMapping::LeastUsedCPUs() 1 7.165e-06 0.0001575 0.000233 0.01% Castro::clean_state() 62 0.0001617 0.0001861 0.0002076 0.01% StateDataPhysBCFunct::() 41 9.787e-05 0.0001404 0.0001669 0.00% Castro::enforce_consistent_e() 1 8.214e-05 0.0001017 0.0001384 0.00% Castro::construct_old_source() 50 3.901e-05 7.922e-05 9.66e-05 0.00% Castro::do_old_sources() 10 3.477e-05 6.562e-05 8.786e-05 0.00% FabArray::ParallelCopy() 41 5.532e-05 7.476e-05 8.519e-05 0.00% Castro::do_new_sources() 10 4.087e-05 6.802e-05 8.124e-05 0.00% FabArrayBase::getCPC() 41 4.339e-05 5.521e-05 7.706e-05 0.00% FillPatchSingleLevel 41 5.904e-05 6.83e-05 7.477e-05 0.00% Castro::Castro() 1 4.975e-05 5.724e-05 7.164e-05 0.00% Castro::subcycle_advance_ctu() 10 3.726e-05 5.894e-05 7.153e-05 0.00% Castro::construct_old_gravity() 10 3.349e-05 5.507e-05 6.609e-05 0.00% Amr::FinalizeInit() 1 3.613e-06 1.223e-05 5.903e-05 0.00% Amr::writeSmallPlotFile() 1 2.488e-05 4.714e-05 5.626e-05 0.00% Castro::finalize_advance() 10 4.568e-05 5.163e-05 5.51e-05 0.00% Castro::apply_source_to_state() 20 3.408e-05 4.687e-05 5.421e-05 0.00% Castro::construct_new_gravity() 10 3.473e-05 4.38e-05 5.07e-05 0.00% Castro::advance() 10 3.437e-05 4.154e-05 4.782e-05 0.00% FabArrayBase::CPC::define() 2 2.357e-05 3.008e-05 3.96e-05 0.00% Amr::defBaseLevel() 1 2.577e-05 3.232e-05 3.92e-05 0.00% Castro::enforce_speed_limit() 62 2.252e-05 2.961e-05 3.793e-05 0.00% Castro::check_for_nan() 20 1.979e-05 2.564e-05 2.902e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.462e-05 1.863e-05 2.56e-05 0.00% Castro::post_timestep() 10 1.128e-05 1.932e-05 2.546e-05 0.00% Castro::create_source_corrector() 10 6.35e-06 1.213e-05 2.256e-05 0.00% Gravity::swapTimeLevels() 10 5.81e-06 1.338e-05 1.91e-05 0.00% Amr::initSubcycle() 1 7.707e-06 1.01e-05 1.461e-05 0.00% Castro::computeNewDt() 9 7.793e-06 1.029e-05 1.296e-05 0.00% Castro::post_init() 1 7.995e-06 1.051e-05 1.269e-05 0.00% Gravity::set_mass_offset() 10 6.33e-06 9.859e-06 1.175e-05 0.00% Castro::FluxRegCrseInit 10 5.936e-06 8.757e-06 1.023e-05 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.667e-06 5.792e-06 8.417e-06 0.00% Castro::post_regrid() 1 1.984e-06 4.083e-06 8.101e-06 0.00% Castro::retry_advance_ctu() 10 4.037e-06 6.288e-06 7.64e-06 0.00% Amr::InitializeInit() 1 1.97e-06 3.443e-06 6.368e-06 0.00% Castro::computeInitialDt() 2 3.28e-06 4.522e-06 5.695e-06 0.00% Castro::FluxRegFineAdd() 10 1.787e-06 2.324e-06 3.015e-06 0.00% Amr::init() 1 1.824e-06 2.33e-06 2.76e-06 0.00% Amr::initialInit() 1 1.259e-06 1.606e-06 1.844e-06 0.00% DistributionMapping::Distribute() 1 9.47e-07 1.212e-06 1.478e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.614 3.616 3.616 100.00% Amr::coarseTimeStep() 10 3.359 3.359 3.359 92.87% Amr::timeStep() 10 3.347 3.348 3.349 92.61% Castro::advance() 10 3.332 3.332 3.332 92.14% Castro::subcycle_advance_ctu() 10 3.258 3.264 3.277 90.60% Castro::do_advance_ctu() 10 3.258 3.264 3.277 90.60% Castro::construct_ctu_hydro_source() 10 2.051 2.329 2.435 67.34% Gravity::make_radial_gravity() 21 0.3479 0.3629 0.3945 10.91% Amr::init() 1 0.242 0.2422 0.2422 6.70% Gravity::get_new_grav_vector() 11 0.2361 0.2402 0.242 6.69% Castro::construct_old_gravity() 10 0.2012 0.213 0.2373 6.56% Gravity::get_old_grav_vector() 10 0.2003 0.2122 0.2368 6.55% Amr::initialInit() 1 0.225 0.2257 0.2265 6.26% FillPatchIterator::Initialize 41 0.1852 0.1937 0.2165 5.99% Castro::construct_new_gravity() 10 0.1992 0.2029 0.2042 5.65% FillPatchSingleLevel 41 0.1337 0.1493 0.1903 5.26% Amr::InitializeInit() 1 0.05659 0.1077 0.1845 5.10% Amr::defBaseLevel() 1 0.05659 0.1077 0.1845 5.10% Castro::initialize_do_advance() 10 0.161 0.1753 0.1803 4.99% Amr::FinalizeInit() 1 0.04204 0.118 0.1691 4.68% Castro::initData() 1 0.04234 0.09212 0.1648 4.56% FabArray::ParallelCopy() 41 0.0904 0.1069 0.1549 4.28% Castro::estTimeStep() 21 0.02425 0.1048 0.1534 4.24% Castro::expand_state() 10 0.1184 0.1282 0.1314 3.63% Castro::computeInitialDt() 2 0.002395 0.0793 0.1305 3.61% FabArray::ParallelCopy_finish() 41 0.04303 0.06413 0.1296 3.58% Castro::clean_state() 62 0.1074 0.1179 0.1245 3.44% Castro::computeTemp() 63 0.06306 0.06996 0.07452 2.06% Castro::initialize_advance() 10 0.05491 0.06827 0.07439 2.06% FabArray::setVal() 143 0.05568 0.06689 0.06956 1.92% Castro::do_new_sources() 10 0.05254 0.06327 0.06634 1.83% Castro::reset_internal_energy(MultiFab) 63 0.04607 0.0508 0.05406 1.49% Castro::reset_internal_energy(Fab) 1008 0.04577 0.05049 0.05372 1.49% Castro::do_old_sources() 10 0.03246 0.04526 0.04911 1.36% FabArray::ParallelCopy_nowait() 41 0.02526 0.04266 0.04812 1.33% StateDataPhysBCFunct::() 41 0.03533 0.04242 0.04664 1.29% StateData::FillBoundary(geom) 41 0.03523 0.04228 0.04648 1.29% Castro::normalize_species() 62 0.03937 0.04208 0.04403 1.22% Castro::post_init() 1 0.03725 0.03805 0.03841 1.06% Castro::construct_new_source() 50 0.0244 0.02971 0.03215 0.89% Gravity::interpolate_monopole_grav() 21 0.02621 0.02759 0.02856 0.79% Amr::writePlotFile() 2 0.02545 0.02637 0.02715 0.75% Castro::construct_new_gravity_source() 10 0.01977 0.02327 0.0252 0.70% Castro::post_timestep() 10 0.01479 0.01599 0.01699 0.47% VisMF::Write(FabArray) 2 0.01193 0.01284 0.01661 0.46% Castro::apply_source_to_state() 20 0.008675 0.01437 0.0163 0.45% MultiFab::Saxpy() 20 0.008641 0.01432 0.01625 0.45% FabArray::setDomainBndry() 41 0.005572 0.01185 0.01522 0.42% Castro::Castro() 1 0.009374 0.01025 0.01281 0.35% Castro::construct_old_source() 50 0.005008 0.0102 0.01203 0.33% Castro::construct_old_gravity_source() 10 0.004969 0.01012 0.01193 0.33% Castro::check_for_nan() 20 0.009542 0.01076 0.01172 0.32% MultiFab::contains_nan() 20 0.009517 0.01074 0.01169 0.32% Castro::initMFs() 1 0.005493 0.006386 0.009021 0.25% Castro::enforce_min_density() 62 0.005763 0.006738 0.00723 0.20% Castro::computeNewDt() 9 0.007174 0.007185 0.007195 0.20% AmrLevel::AmrLevel(dm) 1 0.00457 0.005151 0.006824 0.19% StateData::define() 4 0.004553 0.005133 0.006802 0.19% Castro::swap_state_time_levels() 10 0.002868 0.004071 0.005629 0.16% Castro::post_regrid() 1 0.001556 0.001966 0.00288 0.08% Castro::buildMetrics() 1 0.001404 0.00161 0.002181 0.06% Castro::finalize_do_advance() 10 0.0005403 0.001045 0.001241 0.03% Amr::InitAmr() 1 0.0002688 0.0003374 0.0004667 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.5e-05 0.0001645 0.0002397 0.01% DistributionMapping::LeastUsedCPUs() 1 7.165e-06 0.0001575 0.000233 0.01% Castro::enforce_consistent_e() 1 8.214e-05 0.0001017 0.0001384 0.00% FabArrayBase::getCPC() 41 7.133e-05 8.529e-05 0.0001078 0.00% Castro::finalize_advance() 10 5.428e-05 6.271e-05 6.835e-05 0.00% Amr::writeSmallPlotFile() 1 2.488e-05 4.714e-05 5.626e-05 0.00% FabArrayBase::CPC::define() 2 2.357e-05 3.008e-05 3.96e-05 0.00% Castro::enforce_speed_limit() 62 2.252e-05 2.961e-05 3.793e-05 0.00% Castro::create_source_corrector() 10 6.35e-06 1.213e-05 2.256e-05 0.00% Gravity::swapTimeLevels() 10 5.81e-06 1.338e-05 1.91e-05 0.00% Amr::initSubcycle() 1 7.707e-06 1.01e-05 1.461e-05 0.00% Gravity::set_mass_offset() 10 6.33e-06 9.859e-06 1.175e-05 0.00% Castro::FluxRegCrseInit 10 5.936e-06 8.757e-06 1.023e-05 0.00% Castro::retry_advance_ctu() 10 4.037e-06 6.288e-06 7.64e-06 0.00% Castro::FluxRegFineAdd() 10 1.787e-06 2.324e-06 3.015e-06 0.00% DistributionMapping::Distribute() 1 9.47e-07 1.212e-06 1.478e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.05-29-g1305eb3d364d) finalized