MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.05-30-gb3ffba60f140) initialized Starting run at 05:37:57 UTC on 2022-05-26. Successfully read inputs file ... Castro git describe: 22.05-33-g9203058b8 AMReX git describe: 22.05-30-gb3ffba60f Microphysics git describe: 22.05-1-g39742967 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015126143 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.348777006 [STEP 1] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.338307072 [STEP 2] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.337997594 [STEP 3] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.337167517 [STEP 4] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.348970997 [STEP 5] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.343351276 [STEP 6] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.333663643 [STEP 7] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.333340619 [STEP 8] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.33164835 [STEP 9] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.344460933 [STEP 10] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009734496 seconds Ending run at 05:38:00 UTC on 2022-05-26. Run time = 3.614721437 Run time without initialization = 3.413631104 Average number of zones advanced per microsecond: 0.768 Average number of zones advanced per microsecond per rank: 0.096 TinyProfiler total time across processes [min...avg...max]: 3.613 ... 3.614 ... 3.615 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.0544 2.3535 2.4744 68.45% Castro::do_advance_ctu() 10 0.02978 0.151 0.4522 12.51% Gravity::make_radial_gravity() 21 0.3448 0.3558 0.3841 10.63% Castro::estTimeStep() 21 0.02847 0.08574 0.1414 3.91% Castro::initData() 1 0.03841 0.08094 0.135 3.73% FabArray::ParallelCopy_finish() 41 0.04356 0.06218 0.1241 3.43% FabArray::setVal() 143 0.05916 0.06893 0.07177 1.99% Castro::reset_internal_energy(Fab) 1008 0.04523 0.05013 0.05271 1.46% FabArray::ParallelCopy_nowait() 41 0.02634 0.04321 0.04895 1.35% StateData::FillBoundary(geom) 41 0.03497 0.04273 0.0463 1.28% Castro::normalize_species() 62 0.04035 0.04181 0.04332 1.20% FillPatchIterator::Initialize 41 0.02046 0.03232 0.03654 1.01% Gravity::interpolate_monopole_grav() 21 0.02615 0.02771 0.02815 0.78% Castro::construct_new_gravity_source() 10 0.01967 0.02328 0.02442 0.68% Castro::expand_state() 10 0.009659 0.01903 0.02277 0.63% Castro::computeTemp() 63 0.01708 0.01906 0.0205 0.57% Castro::initialize_do_advance() 10 0.009163 0.01651 0.01809 0.50% VisMF::Write(FabArray) 2 0.01182 0.01248 0.01602 0.44% MultiFab::Saxpy() 20 0.008699 0.0144 0.01583 0.44% FabArray::setDomainBndry() 41 0.004863 0.012 0.01525 0.42% Amr::writePlotFile() 2 0.009054 0.01163 0.01243 0.34% Gravity::get_new_grav_vector() 11 0.006995 0.01117 0.01236 0.34% MultiFab::contains_nan() 20 0.00935 0.01091 0.01193 0.33% Castro::construct_old_gravity_source() 10 0.004923 0.01003 0.01147 0.32% Gravity::get_old_grav_vector() 10 0.005614 0.009489 0.01108 0.31% Castro::initialize_advance() 10 0.006777 0.009842 0.01046 0.29% Castro::enforce_min_density() 62 0.005997 0.006686 0.007222 0.20% Castro::construct_new_source() 50 0.004787 0.006384 0.006991 0.19% Castro::initMFs() 1 0.00549 0.005862 0.006898 0.19% main() 1 0.003439 0.004964 0.005442 0.15% StateData::define() 4 0.004594 0.004768 0.005167 0.14% Castro::swap_state_time_levels() 10 0.002865 0.003705 0.003958 0.11% Amr::coarseTimeStep() 10 0.0009237 0.001232 0.001955 0.05% Castro::buildMetrics() 1 0.001296 0.001359 0.001501 0.04% Castro::finalize_do_advance() 10 0.0005336 0.0009497 0.00108 0.03% Amr::timeStep() 10 0.0001682 0.0002341 0.0005182 0.01% Amr::InitAmr() 1 0.000252 0.0002892 0.0004299 0.01% Castro::reset_internal_energy(MultiFab) 63 0.000299 0.0003138 0.0003466 0.01% DistributionMapping::LeastUsedCPUs() 1 7.077e-06 0.0001644 0.0001989 0.01% StateDataPhysBCFunct::() 41 9.939e-05 0.0001412 0.0001858 0.01% Castro::clean_state() 62 0.0001502 0.0001672 0.0001806 0.00% Castro::do_new_sources() 10 4.067e-05 7.332e-05 0.0001152 0.00% Castro::enforce_consistent_e() 1 8.511e-05 9.488e-05 0.000105 0.00% Castro::construct_old_source() 50 3.361e-05 7.639e-05 9.695e-05 0.00% FabArray::ParallelCopy() 41 6.145e-05 7.773e-05 9.307e-05 0.00% Castro::Castro() 1 5.101e-05 6.924e-05 8.577e-05 0.00% Castro::do_old_sources() 10 3.485e-05 6.579e-05 7.673e-05 0.00% FillPatchSingleLevel 41 6.72e-05 7.143e-05 7.553e-05 0.00% Castro::subcycle_advance_ctu() 10 4.8e-05 5.685e-05 7.508e-05 0.00% Amr::writeSmallPlotFile() 1 3.139e-05 5.628e-05 7.013e-05 0.00% Castro::construct_old_gravity() 10 3.369e-05 5.461e-05 6.489e-05 0.00% Castro::advance() 10 3.186e-05 4.542e-05 6.401e-05 0.00% Amr::FinalizeInit() 1 4.089e-06 1.21e-05 6.291e-05 0.00% FabArrayBase::getCPC() 41 4.585e-05 5.285e-05 5.828e-05 0.00% Castro::apply_source_to_state() 20 3.433e-05 4.736e-05 5.66e-05 0.00% Castro::finalize_advance() 10 4.791e-05 5.2e-05 5.507e-05 0.00% Castro::construct_new_gravity() 10 3.74e-05 4.496e-05 5.266e-05 0.00% FabArrayBase::CPC::define() 2 2.292e-05 2.641e-05 3.288e-05 0.00% Amr::defBaseLevel() 1 2.631e-05 2.914e-05 3.2e-05 0.00% Castro::enforce_speed_limit() 62 2.399e-05 2.827e-05 3.068e-05 0.00% Castro::check_for_nan() 20 2.347e-05 2.614e-05 3.033e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.197e-05 1.613e-05 2.903e-05 0.00% Castro::post_timestep() 10 1.179e-05 1.864e-05 2.321e-05 0.00% Castro::FluxRegCrseInit 10 5.36e-06 1.156e-05 2.162e-05 0.00% Gravity::swapTimeLevels() 10 5.541e-06 1.179e-05 1.519e-05 0.00% Castro::post_init() 1 8.503e-06 1.014e-05 1.345e-05 0.00% Castro::create_source_corrector() 10 6.852e-06 1.066e-05 1.278e-05 0.00% Gravity::set_mass_offset() 10 7.547e-06 1.03e-05 1.221e-05 0.00% Castro::computeNewDt() 9 7.699e-06 9.738e-06 1.131e-05 0.00% Amr::initSubcycle() 1 7.67e-06 8.4e-06 9.166e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.619e-06 5.127e-06 8.963e-06 0.00% Castro::retry_advance_ctu() 10 3.807e-06 6.081e-06 7.705e-06 0.00% Amr::InitializeInit() 1 2.02e-06 2.731e-06 6.755e-06 0.00% Castro::post_regrid() 1 1.712e-06 3.173e-06 5.613e-06 0.00% Castro::computeInitialDt() 2 3.669e-06 4.283e-06 4.94e-06 0.00% Castro::FluxRegFineAdd() 10 1.774e-06 2.085e-06 2.627e-06 0.00% Amr::init() 1 1.675e-06 2.033e-06 2.413e-06 0.00% Amr::initialInit() 1 9.68e-07 1.438e-06 1.822e-06 0.00% DistributionMapping::Distribute() 1 9.33e-07 1.312e-06 1.693e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.613 3.614 3.615 100.00% Amr::coarseTimeStep() 10 3.398 3.398 3.398 94.02% Amr::timeStep() 10 3.389 3.389 3.39 93.77% Castro::advance() 10 3.373 3.373 3.373 93.32% Castro::subcycle_advance_ctu() 10 3.3 3.302 3.311 91.60% Castro::do_advance_ctu() 10 3.3 3.302 3.311 91.60% Castro::construct_ctu_hydro_source() 10 2.054 2.353 2.474 68.45% Gravity::make_radial_gravity() 21 0.3448 0.3558 0.3841 10.63% Gravity::get_new_grav_vector() 11 0.2326 0.2345 0.2358 6.52% Castro::construct_old_gravity() 10 0.2044 0.2125 0.2334 6.46% Gravity::get_old_grav_vector() 10 0.2035 0.2117 0.2329 6.44% FillPatchIterator::Initialize 41 0.1864 0.1928 0.2143 5.93% Castro::construct_new_gravity() 10 0.2055 0.2066 0.2073 5.73% Amr::init() 1 0.2005 0.2007 0.2007 5.55% FillPatchSingleLevel 41 0.1354 0.1485 0.189 5.23% Amr::initialInit() 1 0.1852 0.1864 0.1869 5.17% Castro::initialize_do_advance() 10 0.1614 0.1741 0.1791 4.96% Amr::InitializeInit() 1 0.05705 0.0999 0.1552 4.29% Amr::defBaseLevel() 1 0.05704 0.0999 0.1552 4.29% FabArray::ParallelCopy() 41 0.09102 0.1055 0.1506 4.17% Castro::estTimeStep() 21 0.02847 0.08574 0.1414 3.91% Castro::initData() 1 0.04255 0.08512 0.1392 3.85% Castro::expand_state() 10 0.1173 0.127 0.13 3.60% Amr::FinalizeInit() 1 0.03108 0.08647 0.1297 3.59% FabArray::ParallelCopy_finish() 41 0.04356 0.06218 0.1241 3.43% Castro::clean_state() 62 0.1082 0.1172 0.1224 3.38% Castro::computeInitialDt() 2 0.001905 0.05716 0.1 2.77% Castro::computeTemp() 63 0.06261 0.06951 0.07355 2.03% Castro::initialize_advance() 10 0.06143 0.07041 0.07325 2.03% FabArray::setVal() 143 0.05916 0.06893 0.07177 1.99% Castro::do_new_sources() 10 0.05252 0.06343 0.06553 1.81% Castro::reset_internal_energy(MultiFab) 63 0.04553 0.05044 0.05306 1.47% Castro::reset_internal_energy(Fab) 1008 0.04523 0.05013 0.05271 1.46% Castro::do_old_sources() 10 0.03242 0.04526 0.04906 1.36% FabArray::ParallelCopy_nowait() 41 0.02643 0.04329 0.04903 1.36% StateDataPhysBCFunct::() 41 0.03509 0.04287 0.04649 1.29% StateData::FillBoundary(geom) 41 0.03497 0.04273 0.0463 1.28% Castro::normalize_species() 62 0.04035 0.04181 0.04332 1.20% Castro::construct_new_source() 50 0.02446 0.02967 0.03087 0.85% Castro::post_init() 1 0.02759 0.02859 0.02914 0.81% Gravity::interpolate_monopole_grav() 21 0.02615 0.02771 0.02815 0.78% Amr::writePlotFile() 2 0.02359 0.02411 0.02508 0.69% Castro::construct_new_gravity_source() 10 0.01967 0.02328 0.02442 0.68% Castro::post_timestep() 10 0.01576 0.016 0.01625 0.45% VisMF::Write(FabArray) 2 0.01182 0.01248 0.01602 0.44% Castro::apply_source_to_state() 20 0.008733 0.01445 0.01588 0.44% MultiFab::Saxpy() 20 0.008699 0.0144 0.01583 0.44% FabArray::setDomainBndry() 41 0.004863 0.012 0.01525 0.42% Castro::check_for_nan() 20 0.009375 0.01094 0.01196 0.33% MultiFab::contains_nan() 20 0.00935 0.01091 0.01193 0.33% Castro::construct_old_source() 50 0.004957 0.01011 0.01155 0.32% Castro::construct_old_gravity_source() 10 0.004923 0.01003 0.01147 0.32% Castro::Castro() 1 0.009384 0.009788 0.0106 0.29% Castro::enforce_min_density() 62 0.005997 0.006686 0.007222 0.20% Castro::computeNewDt() 9 0.00706 0.007064 0.007074 0.20% Castro::initMFs() 1 0.00549 0.005862 0.006898 0.19% AmrLevel::AmrLevel(dm) 1 0.004608 0.004785 0.005182 0.14% StateData::define() 4 0.004594 0.004768 0.005167 0.14% Castro::swap_state_time_levels() 10 0.002865 0.003705 0.003958 0.11% Castro::post_regrid() 1 0.001604 0.001663 0.001933 0.05% Castro::buildMetrics() 1 0.001412 0.001487 0.001645 0.05% Castro::finalize_do_advance() 10 0.0005336 0.0009497 0.00108 0.03% Amr::InitAmr() 1 0.0002607 0.0002976 0.000439 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.228e-05 0.0001708 0.0002059 0.01% DistributionMapping::LeastUsedCPUs() 1 7.077e-06 0.0001644 0.0001989 0.01% Castro::enforce_consistent_e() 1 8.511e-05 9.488e-05 0.000105 0.00% FabArrayBase::getCPC() 41 6.922e-05 7.926e-05 8.605e-05 0.00% Castro::finalize_advance() 10 5.506e-05 6.565e-05 7.759e-05 0.00% Amr::writeSmallPlotFile() 1 3.139e-05 5.628e-05 7.013e-05 0.00% FabArrayBase::CPC::define() 2 2.292e-05 2.641e-05 3.288e-05 0.00% Castro::enforce_speed_limit() 62 2.399e-05 2.827e-05 3.068e-05 0.00% Castro::FluxRegCrseInit 10 5.36e-06 1.156e-05 2.162e-05 0.00% Gravity::swapTimeLevels() 10 5.541e-06 1.179e-05 1.519e-05 0.00% Castro::create_source_corrector() 10 6.852e-06 1.066e-05 1.278e-05 0.00% Gravity::set_mass_offset() 10 7.547e-06 1.03e-05 1.221e-05 0.00% Amr::initSubcycle() 1 7.67e-06 8.4e-06 9.166e-06 0.00% Castro::retry_advance_ctu() 10 3.807e-06 6.081e-06 7.705e-06 0.00% Castro::FluxRegFineAdd() 10 1.774e-06 2.085e-06 2.627e-06 0.00% DistributionMapping::Distribute() 1 9.33e-07 1.312e-06 1.693e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.05-30-gb3ffba60f140) finalized