MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.05-36-g806108c5b892) initialized Starting run at 15:03:48 UTC on 2022-05-27. Successfully read inputs file ... Castro git describe: 22.05-37-ge5d4d9762 AMReX git describe: 22.05-36-g806108c5b Microphysics git describe: 22.05-1-g39742967 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016017373 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.360449521 [STEP 1] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.335890738 [STEP 2] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.336026378 [STEP 3] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.338399422 [STEP 4] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.343562815 [STEP 5] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.338493092 [STEP 6] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.33148877 [STEP 7] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.331976311 [STEP 8] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.332170504 [STEP 9] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.332843189 [STEP 10] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.043369127 seconds Ending run at 15:03:52 UTC on 2022-05-27. Run time = 3.673508938 Run time without initialization = 3.431431356 Average number of zones advanced per microsecond: 0.764 Average number of zones advanced per microsecond per rank: 0.095 TinyProfiler total time across processes [min...avg...max]: 3.671 ... 3.673 ... 3.674 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.0478 2.3533 2.4571 66.89% Castro::do_advance_ctu() 10 0.03532 0.1438 0.4525 12.32% Gravity::make_radial_gravity() 21 0.3495 0.365 0.3921 10.67% Castro::initData() 1 0.06874 0.1079 0.159 4.33% FabArray::ParallelCopy_finish() 41 0.03784 0.05867 0.1247 3.39% Castro::estTimeStep() 21 0.02532 0.08068 0.1203 3.28% FabArray::setVal() 143 0.05633 0.06721 0.07103 1.93% Castro::reset_internal_energy(Fab) 1008 0.04745 0.05074 0.05357 1.46% Amr::writePlotFile() 2 0.04348 0.04743 0.04923 1.34% FabArray::ParallelCopy_nowait() 41 0.02544 0.04339 0.04922 1.34% StateData::FillBoundary(geom) 41 0.03674 0.04277 0.04787 1.30% Castro::normalize_species() 62 0.04007 0.0419 0.04361 1.19% FillPatchIterator::Initialize 41 0.01996 0.0326 0.03724 1.01% Gravity::interpolate_monopole_grav() 21 0.02686 0.02779 0.02861 0.78% Castro::construct_new_gravity_source() 10 0.0201 0.0233 0.02429 0.66% Castro::expand_state() 10 0.009746 0.0184 0.02172 0.59% Castro::computeTemp() 63 0.01767 0.01944 0.02026 0.55% Castro::initialize_do_advance() 10 0.009016 0.01664 0.01854 0.50% MultiFab::Saxpy() 20 0.008572 0.01435 0.01629 0.44% VisMF::Write(FabArray) 2 0.01118 0.01228 0.01612 0.44% FabArray::setDomainBndry() 41 0.006009 0.012 0.01525 0.42% MultiFab::contains_nan() 20 0.009379 0.01122 0.01279 0.35% Gravity::get_new_grav_vector() 11 0.007343 0.01114 0.0127 0.35% Castro::construct_old_gravity_source() 10 0.004979 0.01007 0.01177 0.32% Gravity::get_old_grav_vector() 10 0.005613 0.009496 0.01106 0.30% Castro::initialize_advance() 10 0.003251 0.008665 0.009709 0.26% Castro::initMFs() 1 0.006062 0.007432 0.007964 0.22% StateData::define() 4 0.005026 0.006314 0.007214 0.20% Castro::construct_new_source() 50 0.004716 0.006488 0.007213 0.20% Castro::enforce_min_density() 62 0.005278 0.006124 0.006587 0.18% main() 1 0.003746 0.00557 0.006136 0.17% Castro::swap_state_time_levels() 10 0.002915 0.003609 0.004224 0.11% Amr::coarseTimeStep() 10 0.0008856 0.001532 0.003026 0.08% Castro::buildMetrics() 1 0.001438 0.001801 0.001994 0.05% Castro::finalize_do_advance() 10 0.0005397 0.001164 0.001373 0.04% Amr::InitAmr() 1 0.0003033 0.0004541 0.0006903 0.02% DistributionMapping::LeastUsedCPUs() 1 9.093e-06 0.0002835 0.0004619 0.01% Amr::timeStep() 10 0.000178 0.0002331 0.0004608 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002965 0.0003131 0.0003284 0.01% Castro::clean_state() 62 0.0001515 0.0001723 0.0001888 0.01% Castro::enforce_consistent_e() 1 8.168e-05 0.0001188 0.0001504 0.00% StateDataPhysBCFunct::() 41 0.0001078 0.0001331 0.0001501 0.00% Castro::Castro() 1 5.405e-05 7.275e-05 0.0001083 0.00% Castro::construct_old_source() 50 3.985e-05 7.607e-05 9.781e-05 0.00% FabArray::ParallelCopy() 41 7.26e-05 8.197e-05 8.925e-05 0.00% Castro::do_new_sources() 10 4.131e-05 6.552e-05 8.673e-05 0.00% Castro::do_old_sources() 10 3.842e-05 6.833e-05 8.303e-05 0.00% Castro::subcycle_advance_ctu() 10 3.721e-05 5.538e-05 8.006e-05 0.00% FillPatchSingleLevel 41 5.949e-05 6.658e-05 7.453e-05 0.00% Amr::writeSmallPlotFile() 1 2.491e-05 5.315e-05 6.988e-05 0.00% Castro::construct_old_gravity() 10 3.338e-05 5.367e-05 6.728e-05 0.00% FabArrayBase::getCPC() 41 4.788e-05 5.483e-05 6.396e-05 0.00% Amr::FinalizeInit() 1 3.755e-06 1.191e-05 5.974e-05 0.00% Castro::apply_source_to_state() 20 4.13e-05 4.82e-05 5.515e-05 0.00% Castro::finalize_advance() 10 5.045e-05 5.196e-05 5.428e-05 0.00% Castro::advance() 10 3.336e-05 4.287e-05 4.807e-05 0.00% Castro::construct_new_gravity() 10 3.541e-05 4.428e-05 4.793e-05 0.00% Castro::enforce_speed_limit() 62 2.553e-05 3.131e-05 3.984e-05 0.00% Amr::defBaseLevel() 1 2.908e-05 3.498e-05 3.972e-05 0.00% FabArrayBase::CPC::define() 2 2.408e-05 2.908e-05 3.847e-05 0.00% Castro::check_for_nan() 20 2.079e-05 2.558e-05 2.922e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.436e-05 1.983e-05 2.807e-05 0.00% Castro::post_timestep() 10 1.149e-05 1.718e-05 2.251e-05 0.00% Amr::initSubcycle() 1 1.001e-05 1.388e-05 1.814e-05 0.00% Gravity::swapTimeLevels() 10 5.711e-06 1.199e-05 1.489e-05 0.00% Castro::create_source_corrector() 10 6.345e-06 1.046e-05 1.383e-05 0.00% Castro::post_init() 1 9.188e-06 1.123e-05 1.298e-05 0.00% Gravity::set_mass_offset() 10 7.607e-06 1.058e-05 1.292e-05 0.00% Castro::FluxRegCrseInit 10 6.428e-06 8.913e-06 1.14e-05 0.00% Amr::InitializeInit() 1 2.414e-06 4.283e-06 1.116e-05 0.00% Castro::computeNewDt() 9 7.635e-06 9.493e-06 1.107e-05 0.00% Castro::retry_advance_ctu() 10 3.825e-06 5.886e-06 7.508e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.684e-06 5.43e-06 6.339e-06 0.00% Castro::post_regrid() 1 2.246e-06 3.5e-06 5.117e-06 0.00% Castro::computeInitialDt() 2 3.391e-06 4.096e-06 4.85e-06 0.00% Amr::init() 1 2.181e-06 2.549e-06 2.761e-06 0.00% Castro::FluxRegFineAdd() 10 1.964e-06 2.285e-06 2.713e-06 0.00% Amr::initialInit() 1 1.253e-06 1.497e-06 1.93e-06 0.00% DistributionMapping::Distribute() 1 1.274e-06 1.52e-06 1.751e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.671 3.673 3.674 100.00% Amr::coarseTimeStep() 10 3.382 3.382 3.382 92.06% Amr::timeStep() 10 3.37 3.372 3.373 91.81% Castro::advance() 10 3.355 3.356 3.356 91.35% Castro::subcycle_advance_ctu() 10 3.284 3.288 3.3 89.82% Castro::do_advance_ctu() 10 3.284 3.288 3.3 89.82% Castro::construct_ctu_hydro_source() 10 2.048 2.353 2.457 66.89% Gravity::make_radial_gravity() 21 0.3495 0.365 0.3921 10.67% Gravity::get_new_grav_vector() 11 0.2393 0.2412 0.2432 6.62% Amr::init() 1 0.2412 0.2414 0.2416 6.58% Castro::construct_old_gravity() 10 0.2005 0.2144 0.2345 6.38% Gravity::get_old_grav_vector() 10 0.1996 0.2136 0.234 6.37% Amr::initialInit() 1 0.2243 0.2252 0.2261 6.15% FillPatchIterator::Initialize 41 0.1802 0.1898 0.2133 5.81% Castro::construct_new_gravity() 10 0.2024 0.2037 0.2054 5.59% FillPatchSingleLevel 41 0.1284 0.1452 0.1872 5.09% Amr::InitializeInit() 1 0.09139 0.1312 0.1842 5.01% Amr::defBaseLevel() 1 0.09139 0.1312 0.1842 5.01% Castro::initialize_do_advance() 10 0.1635 0.1707 0.1783 4.85% Castro::initData() 1 0.07455 0.1128 0.1647 4.48% FabArray::ParallelCopy() 41 0.08652 0.1022 0.1503 4.09% Amr::FinalizeInit() 1 0.04026 0.09397 0.134 3.65% Castro::expand_state() 10 0.12 0.1237 0.1292 3.52% FabArray::ParallelCopy_finish() 41 0.03784 0.05867 0.1247 3.39% Castro::clean_state() 62 0.1098 0.1173 0.1219 3.32% Castro::estTimeStep() 21 0.02532 0.08068 0.1203 3.28% Castro::computeInitialDt() 2 0.002159 0.05514 0.09514 2.59% Castro::computeTemp() 63 0.06543 0.07049 0.07415 2.02% Castro::initialize_advance() 10 0.0554 0.0675 0.07187 1.96% FabArray::setVal() 143 0.05633 0.06721 0.07103 1.93% Castro::do_new_sources() 10 0.05335 0.06327 0.0654 1.78% Amr::writePlotFile() 2 0.05881 0.05971 0.06052 1.65% Castro::reset_internal_energy(MultiFab) 63 0.04777 0.05105 0.05388 1.47% Castro::reset_internal_energy(Fab) 1008 0.04745 0.05074 0.05357 1.46% FabArray::ParallelCopy_nowait() 41 0.02552 0.04348 0.04931 1.34% Castro::do_old_sources() 10 0.03218 0.04532 0.04913 1.34% StateDataPhysBCFunct::() 41 0.03685 0.04291 0.048 1.31% StateData::FillBoundary(geom) 41 0.03674 0.04277 0.04787 1.30% Castro::normalize_species() 62 0.04007 0.0419 0.04361 1.19% Castro::post_init() 1 0.03756 0.03822 0.03885 1.06% Castro::construct_new_source() 50 0.02482 0.02978 0.03131 0.85% Gravity::interpolate_monopole_grav() 21 0.02686 0.02779 0.02861 0.78% Castro::construct_new_gravity_source() 10 0.0201 0.0233 0.02429 0.66% Castro::post_timestep() 10 0.01483 0.01586 0.01642 0.45% Castro::apply_source_to_state() 20 0.008613 0.0144 0.01634 0.44% MultiFab::Saxpy() 20 0.008572 0.01435 0.01629 0.44% VisMF::Write(FabArray) 2 0.01118 0.01228 0.01612 0.44% FabArray::setDomainBndry() 41 0.006009 0.012 0.01525 0.42% Castro::check_for_nan() 20 0.0094 0.01125 0.01282 0.35% MultiFab::contains_nan() 20 0.009379 0.01122 0.01279 0.35% Castro::Castro() 1 0.009069 0.01171 0.01269 0.35% Castro::construct_old_source() 50 0.005019 0.01014 0.01185 0.32% Castro::construct_old_gravity_source() 10 0.004979 0.01007 0.01177 0.32% Castro::initMFs() 1 0.006062 0.007432 0.007964 0.22% Castro::computeNewDt() 9 0.007252 0.007268 0.007282 0.20% AmrLevel::AmrLevel(dm) 1 0.005047 0.006333 0.007233 0.20% StateData::define() 4 0.005026 0.006314 0.007214 0.20% Castro::enforce_min_density() 62 0.005278 0.006124 0.006587 0.18% Castro::swap_state_time_levels() 10 0.002915 0.003609 0.004224 0.11% Castro::post_regrid() 1 0.001545 0.001969 0.002923 0.08% Castro::buildMetrics() 1 0.001568 0.001996 0.002216 0.06% Castro::finalize_do_advance() 10 0.0005397 0.001164 0.001373 0.04% Amr::InitAmr() 1 0.0003133 0.000468 0.0007062 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.617e-05 0.0002905 0.0004694 0.01% DistributionMapping::LeastUsedCPUs() 1 9.093e-06 0.0002835 0.0004619 0.01% Castro::enforce_consistent_e() 1 8.168e-05 0.0001188 0.0001504 0.00% FabArrayBase::getCPC() 41 7.514e-05 8.391e-05 9.673e-05 0.00% Amr::writeSmallPlotFile() 1 2.491e-05 5.315e-05 6.988e-05 0.00% Castro::finalize_advance() 10 5.884e-05 6.316e-05 6.687e-05 0.00% Castro::enforce_speed_limit() 62 2.553e-05 3.131e-05 3.984e-05 0.00% FabArrayBase::CPC::define() 2 2.408e-05 2.908e-05 3.847e-05 0.00% Amr::initSubcycle() 1 1.001e-05 1.388e-05 1.814e-05 0.00% Gravity::swapTimeLevels() 10 5.711e-06 1.199e-05 1.489e-05 0.00% Castro::create_source_corrector() 10 6.345e-06 1.046e-05 1.383e-05 0.00% Gravity::set_mass_offset() 10 7.607e-06 1.058e-05 1.292e-05 0.00% Castro::FluxRegCrseInit 10 6.428e-06 8.913e-06 1.14e-05 0.00% Castro::retry_advance_ctu() 10 3.825e-06 5.886e-06 7.508e-06 0.00% Castro::FluxRegFineAdd() 10 1.964e-06 2.285e-06 2.713e-06 0.00% DistributionMapping::Distribute() 1 1.274e-06 1.52e-06 1.751e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.05-36-g806108c5b892) finalized