MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.05-37-gb78921a2d80d) initialized Starting run at 18:44:48 UTC on 2022-05-27. Successfully read inputs file ... Castro git describe: 22.05-46-ge35d9ba55 AMReX git describe: 22.05-37-gb78921a2d Microphysics git describe: 22.05-1-g39742967 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014088044 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.356262759 [STEP 1] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.336810037 [STEP 2] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.340061719 [STEP 3] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.339724684 [STEP 4] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.347117322 [STEP 5] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.343719789 [STEP 6] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.331809765 [STEP 7] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.331910803 [STEP 8] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.332074987 [STEP 9] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.337259095 [STEP 10] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.034707594 seconds Ending run at 18:44:52 UTC on 2022-05-27. Run time = 3.641228498 Run time without initialization = 3.437309133 Average number of zones advanced per microsecond: 0.763 Average number of zones advanced per microsecond per rank: 0.095 TinyProfiler total time across processes [min...avg...max]: 3.64 ... 3.641 ... 3.641 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.0684 2.3546 2.4724 67.90% Castro::do_advance_ctu() 10 0.03072 0.1531 0.442 12.14% Gravity::make_radial_gravity() 21 0.3459 0.3585 0.384 10.55% Castro::estTimeStep() 21 0.02792 0.08657 0.1477 4.06% Castro::initData() 1 0.03785 0.08336 0.1362 3.74% FabArray::ParallelCopy_finish() 41 0.03883 0.06075 0.1257 3.45% FabArray::setVal() 143 0.05509 0.06665 0.07013 1.93% Castro::reset_internal_energy(Fab) 1008 0.04616 0.05017 0.0522 1.43% FabArray::ParallelCopy_nowait() 41 0.02619 0.043 0.04875 1.34% StateData::FillBoundary(geom) 41 0.03614 0.04272 0.04805 1.32% Castro::normalize_species() 62 0.04113 0.04226 0.04364 1.20% Amr::writePlotFile() 2 0.03404 0.03671 0.03788 1.04% FillPatchIterator::Initialize 41 0.0203 0.03221 0.03667 1.01% Gravity::interpolate_monopole_grav() 21 0.02637 0.02764 0.0284 0.78% Castro::expand_state() 10 0.009731 0.0184 0.02212 0.61% Castro::computeTemp() 63 0.01767 0.01913 0.02013 0.55% Castro::construct_new_gravity_source() 10 0.01407 0.01826 0.01944 0.53% Castro::initialize_do_advance() 10 0.009089 0.01659 0.01847 0.51% MultiFab::Saxpy() 20 0.008868 0.0148 0.01658 0.46% FabArray::setDomainBndry() 41 0.004905 0.01178 0.01519 0.42% VisMF::Write(FabArray) 2 0.01139 0.01239 0.01496 0.41% Gravity::get_new_grav_vector() 11 0.00734 0.01139 0.0132 0.36% MultiFab::contains_nan() 20 0.009314 0.01104 0.01208 0.33% Castro::construct_old_gravity_source() 10 0.005203 0.01019 0.01192 0.33% Gravity::get_old_grav_vector() 10 0.005957 0.009385 0.01095 0.30% Castro::initialize_advance() 10 0.003221 0.008593 0.009524 0.26% Castro::initMFs() 1 0.00537 0.006379 0.008412 0.23% Castro::construct_new_source() 50 0.004984 0.006864 0.007381 0.20% Castro::enforce_min_density() 62 0.006043 0.006698 0.007326 0.20% StateData::define() 4 0.004593 0.005394 0.006789 0.19% main() 1 0.003535 0.004808 0.005254 0.14% Castro::swap_state_time_levels() 10 0.00289 0.003769 0.004321 0.12% Amr::coarseTimeStep() 10 0.0006984 0.00163 0.003195 0.09% Castro::buildMetrics() 1 0.001285 0.001494 0.001917 0.05% Castro::finalize_do_advance() 10 0.0005346 0.000952 0.001085 0.03% Amr::InitAmr() 1 0.00026 0.0003358 0.0006069 0.02% Amr::timeStep() 10 0.0001736 0.0002302 0.0004802 0.01% DistributionMapping::LeastUsedCPUs() 1 8.821e-06 0.0003116 0.0003973 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002915 0.0003072 0.000331 0.01% Castro::clean_state() 62 0.0001496 0.0001693 0.0001899 0.01% StateDataPhysBCFunct::() 41 0.0001145 0.000133 0.0001576 0.00% FabArray::ParallelCopy() 41 7.041e-05 8.422e-05 9.747e-05 0.00% Castro::enforce_consistent_e() 1 8.469e-05 8.91e-05 9.733e-05 0.00% Castro::construct_old_source() 50 3.692e-05 7.436e-05 9.493e-05 0.00% Castro::do_new_sources() 10 4.137e-05 7.106e-05 8.753e-05 0.00% FillPatchSingleLevel 41 5.726e-05 7.438e-05 8.245e-05 0.00% Castro::do_old_sources() 10 4.082e-05 6.922e-05 8.104e-05 0.00% Castro::construct_old_gravity() 10 4.003e-05 5.501e-05 7.423e-05 0.00% Amr::writeSmallPlotFile() 1 2.392e-05 4.709e-05 6.593e-05 0.00% Amr::FinalizeInit() 1 3.683e-06 1.279e-05 6.566e-05 0.00% FabArrayBase::getCPC() 41 4.298e-05 5.381e-05 6.566e-05 0.00% Castro::subcycle_advance_ctu() 10 3.311e-05 5.269e-05 6.517e-05 0.00% Castro::Castro() 1 4.847e-05 5.661e-05 6.378e-05 0.00% Castro::advance() 10 3.418e-05 4.749e-05 6.345e-05 0.00% Castro::apply_source_to_state() 20 3.647e-05 4.838e-05 6.173e-05 0.00% Castro::finalize_advance() 10 4.656e-05 5.111e-05 5.702e-05 0.00% Castro::construct_new_gravity() 10 3.909e-05 4.633e-05 5.288e-05 0.00% Amr::defBaseLevel() 1 2.727e-05 3.078e-05 3.346e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.402e-05 2.094e-05 3.23e-05 0.00% FabArrayBase::CPC::define() 2 2.235e-05 2.575e-05 3.202e-05 0.00% Castro::check_for_nan() 20 2.181e-05 2.494e-05 2.991e-05 0.00% Castro::enforce_speed_limit() 62 2.235e-05 2.681e-05 2.963e-05 0.00% Gravity::swapTimeLevels() 10 6.632e-06 1.45e-05 2.779e-05 0.00% Castro::post_timestep() 10 1.033e-05 1.644e-05 2.257e-05 0.00% Castro::post_init() 1 7.858e-06 1.062e-05 2.039e-05 0.00% Amr::initSubcycle() 1 8.359e-06 1.228e-05 1.631e-05 0.00% Gravity::set_mass_offset() 10 7.023e-06 1.053e-05 1.418e-05 0.00% Castro::create_source_corrector() 10 7.023e-06 1.138e-05 1.363e-05 0.00% Castro::FluxRegCrseInit 10 6.556e-06 9.145e-06 1.071e-05 0.00% Castro::computeNewDt() 9 7.827e-06 9.249e-06 1.065e-05 0.00% Castro::post_regrid() 1 2.055e-06 3.517e-06 1.037e-05 0.00% Amr::InitializeInit() 1 2.031e-06 3.18e-06 9.198e-06 0.00% Amr::initialInit() 1 1.093e-06 2.129e-06 7.826e-06 0.00% Castro::retry_advance_ctu() 10 3.946e-06 5.802e-06 7.363e-06 0.00% Castro::computeInitialDt() 2 3.04e-06 4.095e-06 6.105e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.98e-06 4.58e-06 5.422e-06 0.00% Castro::FluxRegFineAdd() 10 1.969e-06 2.323e-06 3.092e-06 0.00% Amr::init() 1 1.742e-06 2.277e-06 2.98e-06 0.00% DistributionMapping::Distribute() 1 1.177e-06 1.334e-06 1.535e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.64 3.641 3.641 100.00% Amr::coarseTimeStep() 10 3.397 3.397 3.397 93.30% Amr::timeStep() 10 3.386 3.387 3.388 93.05% Castro::advance() 10 3.37 3.371 3.371 92.58% Castro::subcycle_advance_ctu() 10 3.3 3.303 3.315 91.05% Castro::do_advance_ctu() 10 3.3 3.303 3.315 91.05% Castro::construct_ctu_hydro_source() 10 2.068 2.355 2.472 67.90% Gravity::make_radial_gravity() 21 0.3459 0.3585 0.384 10.55% Gravity::get_new_grav_vector() 11 0.2322 0.2345 0.2358 6.48% Castro::construct_old_gravity() 10 0.2026 0.214 0.2343 6.44% Gravity::get_old_grav_vector() 10 0.2018 0.2132 0.2338 6.42% FillPatchIterator::Initialize 41 0.1809 0.1908 0.2157 5.92% Castro::construct_new_gravity() 10 0.207 0.2082 0.2092 5.75% Amr::init() 1 0.2031 0.2034 0.2035 5.59% FillPatchSingleLevel 41 0.1301 0.1468 0.1904 5.23% Amr::initialInit() 1 0.1889 0.1891 0.1894 5.20% Castro::initialize_do_advance() 10 0.1607 0.1732 0.18 4.94% Amr::InitializeInit() 1 0.0558 0.1028 0.1594 4.38% Amr::defBaseLevel() 1 0.0558 0.1028 0.1594 4.38% FabArray::ParallelCopy() 41 0.08656 0.1039 0.1521 4.18% Castro::estTimeStep() 21 0.02792 0.08657 0.1477 4.06% Castro::initData() 1 0.04186 0.08724 0.1403 3.85% Amr::FinalizeInit() 1 0.02979 0.08626 0.1333 3.66% Castro::expand_state() 10 0.117 0.1259 0.1312 3.60% FabArray::ParallelCopy_finish() 41 0.03883 0.06075 0.1257 3.45% Castro::clean_state() 62 0.1106 0.1178 0.1229 3.37% Castro::computeInitialDt() 2 0.001788 0.05847 0.1056 2.90% Castro::computeTemp() 63 0.0642 0.06961 0.07265 2.00% Castro::initialize_advance() 10 0.05512 0.06783 0.07079 1.94% FabArray::setVal() 143 0.05509 0.06665 0.07013 1.93% Castro::do_new_sources() 10 0.04707 0.05916 0.06177 1.70% Castro::reset_internal_energy(MultiFab) 63 0.04648 0.05048 0.05253 1.44% Castro::reset_internal_energy(Fab) 1008 0.04616 0.05017 0.0522 1.43% Castro::do_old_sources() 10 0.03303 0.04558 0.0505 1.39% Amr::writePlotFile() 2 0.04886 0.0491 0.04935 1.36% FabArray::ParallelCopy_nowait() 41 0.02628 0.04308 0.04884 1.34% StateDataPhysBCFunct::() 41 0.03625 0.04286 0.04818 1.32% StateData::FillBoundary(geom) 41 0.03614 0.04272 0.04805 1.32% Castro::normalize_species() 62 0.04113 0.04226 0.04364 1.20% Gravity::interpolate_monopole_grav() 21 0.02637 0.02764 0.0284 0.78% Castro::post_init() 1 0.02616 0.02701 0.02722 0.75% Castro::construct_new_source() 50 0.01906 0.02512 0.02674 0.73% Castro::construct_new_gravity_source() 10 0.01407 0.01826 0.01944 0.53% Castro::post_timestep() 10 0.01511 0.01625 0.01705 0.47% Castro::apply_source_to_state() 20 0.008907 0.01485 0.01664 0.46% MultiFab::Saxpy() 20 0.008868 0.0148 0.01658 0.46% FabArray::setDomainBndry() 41 0.004905 0.01178 0.01519 0.42% VisMF::Write(FabArray) 2 0.01139 0.01239 0.01496 0.41% Castro::Castro() 1 0.008702 0.009839 0.01215 0.33% Castro::check_for_nan() 20 0.009336 0.01107 0.01211 0.33% MultiFab::contains_nan() 20 0.009314 0.01104 0.01208 0.33% Castro::construct_old_source() 50 0.00524 0.01027 0.01201 0.33% Castro::construct_old_gravity_source() 10 0.005203 0.01019 0.01192 0.33% Castro::initMFs() 1 0.00537 0.006379 0.008412 0.23% Castro::computeNewDt() 9 0.007445 0.007454 0.007464 0.20% Castro::enforce_min_density() 62 0.006043 0.006698 0.007326 0.20% AmrLevel::AmrLevel(dm) 1 0.00461 0.005415 0.006811 0.19% StateData::define() 4 0.004593 0.005394 0.006789 0.19% Castro::swap_state_time_levels() 10 0.00289 0.003769 0.004321 0.12% Castro::post_regrid() 1 0.001515 0.001761 0.002471 0.07% Castro::buildMetrics() 1 0.001402 0.001645 0.002147 0.06% Castro::finalize_do_advance() 10 0.0005346 0.000952 0.001085 0.03% Amr::InitAmr() 1 0.0002763 0.0003481 0.0006207 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.437e-05 0.0003175 0.000404 0.01% DistributionMapping::LeastUsedCPUs() 1 8.821e-06 0.0003116 0.0003973 0.01% FabArrayBase::getCPC() 41 6.753e-05 7.956e-05 9.767e-05 0.00% Castro::enforce_consistent_e() 1 8.469e-05 8.91e-05 9.733e-05 0.00% Castro::finalize_advance() 10 5.542e-05 6.257e-05 7.082e-05 0.00% Amr::writeSmallPlotFile() 1 2.392e-05 4.709e-05 6.593e-05 0.00% FabArrayBase::CPC::define() 2 2.235e-05 2.575e-05 3.202e-05 0.00% Castro::enforce_speed_limit() 62 2.235e-05 2.681e-05 2.963e-05 0.00% Gravity::swapTimeLevels() 10 6.632e-06 1.45e-05 2.779e-05 0.00% Amr::initSubcycle() 1 8.359e-06 1.228e-05 1.631e-05 0.00% Gravity::set_mass_offset() 10 7.023e-06 1.053e-05 1.418e-05 0.00% Castro::create_source_corrector() 10 7.023e-06 1.138e-05 1.363e-05 0.00% Castro::FluxRegCrseInit 10 6.556e-06 9.145e-06 1.071e-05 0.00% Castro::retry_advance_ctu() 10 3.946e-06 5.802e-06 7.363e-06 0.00% Castro::FluxRegFineAdd() 10 1.969e-06 2.323e-06 3.092e-06 0.00% DistributionMapping::Distribute() 1 1.177e-06 1.334e-06 1.535e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.05-37-gb78921a2d80d) finalized