MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.05-36-g806108c5b892) initialized Starting run at 05:38:33 UTC on 2022-05-27. Successfully read inputs file ... Castro git describe: 22.05-33-g9203058b8 AMReX git describe: 22.05-36-g806108c5b Microphysics git describe: 22.05-1-g39742967 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014046207 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.344835214 [STEP 1] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.335880581 [STEP 2] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.334953511 [STEP 3] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.334584241 [STEP 4] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.33587042 [STEP 5] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.345674662 [STEP 6] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.331826172 [STEP 7] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.329858413 [STEP 8] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.329776644 [STEP 9] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.331394791 [STEP 10] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.048908021 seconds Ending run at 05:38:36 UTC on 2022-05-27. Run time = 3.606300259 Run time without initialization = 3.410041513 Average number of zones advanced per microsecond: 0.769 Average number of zones advanced per microsecond per rank: 0.096 TinyProfiler total time across processes [min...avg...max]: 3.604 ... 3.606 ... 3.606 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.0364 2.3415 2.4407 67.68% Castro::do_advance_ctu() 10 0.03055 0.1309 0.4382 12.15% Gravity::make_radial_gravity() 21 0.3384 0.3527 0.3829 10.62% Castro::initData() 1 0.03827 0.08253 0.1324 3.67% Castro::estTimeStep() 21 0.0196 0.07288 0.1305 3.62% FabArray::ParallelCopy_finish() 41 0.04418 0.06144 0.124 3.44% FabArray::setVal() 143 0.0599 0.06959 0.07238 2.01% Amr::writePlotFile() 2 0.04659 0.05117 0.05241 1.45% Castro::reset_internal_energy(Fab) 1008 0.04525 0.04925 0.05199 1.44% FabArray::ParallelCopy_nowait() 41 0.02591 0.04351 0.04897 1.36% StateData::FillBoundary(geom) 41 0.03499 0.04189 0.04653 1.29% Castro::normalize_species() 62 0.04066 0.04154 0.0422 1.17% FillPatchIterator::Initialize 41 0.02018 0.03225 0.03762 1.04% Gravity::interpolate_monopole_grav() 21 0.02672 0.02756 0.02789 0.77% Castro::construct_new_gravity_source() 10 0.01792 0.0229 0.02432 0.67% Castro::expand_state() 10 0.009399 0.01915 0.02249 0.62% Castro::computeTemp() 63 0.0167 0.01841 0.01964 0.54% Castro::initialize_do_advance() 10 0.008755 0.01628 0.01778 0.49% VisMF::Write(FabArray) 2 0.01122 0.01238 0.01661 0.46% MultiFab::Saxpy() 20 0.00852 0.0143 0.01637 0.45% FabArray::setDomainBndry() 41 0.006077 0.01208 0.01516 0.42% Gravity::get_new_grav_vector() 11 0.008323 0.01133 0.01279 0.35% MultiFab::contains_nan() 20 0.009764 0.01088 0.01218 0.34% Castro::construct_old_gravity_source() 10 0.004884 0.01002 0.01174 0.33% Gravity::get_old_grav_vector() 10 0.005548 0.009829 0.01133 0.31% Castro::initialize_advance() 10 0.006701 0.01027 0.01113 0.31% Castro::initMFs() 1 0.005412 0.006308 0.008479 0.24% Castro::construct_new_source() 50 0.004637 0.006473 0.007064 0.20% Castro::enforce_min_density() 62 0.005419 0.006101 0.006632 0.18% StateData::define() 4 0.004477 0.005071 0.006475 0.18% main() 1 0.003357 0.005235 0.005718 0.16% Castro::swap_state_time_levels() 10 0.002033 0.003609 0.003885 0.11% Amr::coarseTimeStep() 10 0.0008648 0.001459 0.002003 0.06% Castro::buildMetrics() 1 0.001278 0.001458 0.001883 0.05% Castro::finalize_do_advance() 10 0.0005421 0.001059 0.001295 0.04% Amr::timeStep() 10 0.0001689 0.0002411 0.0005312 0.01% Amr::InitAmr() 1 0.0002731 0.0003319 0.0004444 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002923 0.0003084 0.0003311 0.01% DistributionMapping::LeastUsedCPUs() 1 8.609e-06 0.0001538 0.0002365 0.01% Castro::clean_state() 62 0.0001448 0.0001709 0.0001893 0.01% StateDataPhysBCFunct::() 41 0.0001095 0.00013 0.0001486 0.00% FabArray::ParallelCopy() 41 7.862e-05 9.157e-05 0.0001105 0.00% Castro::enforce_consistent_e() 1 8.408e-05 8.917e-05 9.606e-05 0.00% FillPatchSingleLevel 41 5.874e-05 7.34e-05 9.555e-05 0.00% Castro::advance() 10 4.05e-05 5.311e-05 9.432e-05 0.00% Castro::construct_old_source() 50 4.502e-05 7.355e-05 9.078e-05 0.00% Castro::subcycle_advance_ctu() 10 3.441e-05 5.95e-05 8.849e-05 0.00% Castro::do_new_sources() 10 4.462e-05 6.734e-05 8.286e-05 0.00% Castro::Castro() 1 5.187e-05 6.361e-05 7.67e-05 0.00% Castro::do_old_sources() 10 4.11e-05 6.171e-05 7.343e-05 0.00% Amr::writeSmallPlotFile() 1 3.079e-05 5.707e-05 7.054e-05 0.00% FabArrayBase::getCPC() 41 4.982e-05 5.662e-05 6.831e-05 0.00% Amr::FinalizeInit() 1 4.127e-06 1.242e-05 6.811e-05 0.00% Castro::construct_old_gravity() 10 3.9e-05 5.646e-05 6.711e-05 0.00% Castro::apply_source_to_state() 20 3.925e-05 5.052e-05 6.545e-05 0.00% Castro::finalize_advance() 10 4.789e-05 5.111e-05 5.357e-05 0.00% Castro::construct_new_gravity() 10 3.947e-05 4.598e-05 5.254e-05 0.00% Amr::defBaseLevel() 1 2.534e-05 3.214e-05 3.797e-05 0.00% Castro::check_for_nan() 20 2.284e-05 2.681e-05 3.09e-05 0.00% FabArrayBase::CPC::define() 2 2.196e-05 2.669e-05 3.089e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.272e-05 1.964e-05 3.026e-05 0.00% Castro::enforce_speed_limit() 62 2.355e-05 2.699e-05 3.011e-05 0.00% Castro::post_timestep() 10 1.123e-05 1.679e-05 2.537e-05 0.00% Castro::post_init() 1 9.493e-06 1.129e-05 1.62e-05 0.00% Amr::initSubcycle() 1 8.134e-06 1.03e-05 1.402e-05 0.00% Castro::create_source_corrector() 10 6.266e-06 1.096e-05 1.366e-05 0.00% Gravity::swapTimeLevels() 10 5.196e-06 1.1e-05 1.362e-05 0.00% Gravity::set_mass_offset() 10 7.515e-06 1.065e-05 1.257e-05 0.00% Castro::FluxRegCrseInit 10 5.127e-06 9.015e-06 1.187e-05 0.00% Castro::computeNewDt() 9 7.22e-06 9.224e-06 1.081e-05 0.00% Amr::InitializeInit() 1 1.982e-06 2.991e-06 6.603e-06 0.00% Castro::retry_advance_ctu() 10 3.733e-06 5.301e-06 6.439e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.771e-06 4.829e-06 5.796e-06 0.00% Castro::post_regrid() 1 2.056e-06 3.296e-06 4.637e-06 0.00% Castro::computeInitialDt() 2 3.559e-06 4.212e-06 4.528e-06 0.00% Castro::FluxRegFineAdd() 10 2.166e-06 2.429e-06 2.727e-06 0.00% Amr::init() 1 1.966e-06 2.193e-06 2.506e-06 0.00% DistributionMapping::Distribute() 1 1.008e-06 1.31e-06 1.571e-06 0.00% Amr::initialInit() 1 1.079e-06 1.277e-06 1.52e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.604 3.606 3.606 100.00% Amr::coarseTimeStep() 10 3.355 3.355 3.355 93.04% Amr::timeStep() 10 3.346 3.346 3.347 92.80% Castro::advance() 10 3.33 3.33 3.33 92.35% Castro::subcycle_advance_ctu() 10 3.255 3.259 3.268 90.63% Castro::do_advance_ctu() 10 3.255 3.259 3.268 90.62% Castro::construct_ctu_hydro_source() 10 2.036 2.341 2.441 67.68% Gravity::make_radial_gravity() 21 0.3384 0.3527 0.3829 10.62% Castro::construct_old_gravity() 10 0.1999 0.2112 0.2343 6.50% Gravity::get_old_grav_vector() 10 0.199 0.2103 0.2337 6.48% Gravity::get_new_grav_vector() 11 0.2301 0.2317 0.2331 6.46% FillPatchIterator::Initialize 41 0.1852 0.1916 0.2115 5.87% Castro::construct_new_gravity() 10 0.2039 0.2051 0.2063 5.72% Amr::init() 1 0.1956 0.1958 0.1959 5.43% FillPatchSingleLevel 41 0.1342 0.1472 0.1853 5.14% Castro::initialize_do_advance() 10 0.162 0.1741 0.1818 5.04% Amr::initialInit() 1 0.1809 0.1812 0.1815 5.03% Amr::InitializeInit() 1 0.05608 0.1017 0.1515 4.20% Amr::defBaseLevel() 1 0.05608 0.1017 0.1515 4.20% FabArray::ParallelCopy() 41 0.09149 0.1051 0.1501 4.16% Castro::initData() 1 0.04227 0.08643 0.1363 3.78% Castro::expand_state() 10 0.1192 0.1278 0.1337 3.71% Castro::estTimeStep() 21 0.0196 0.07288 0.1305 3.62% Amr::FinalizeInit() 1 0.0298 0.07956 0.1251 3.47% FabArray::ParallelCopy_finish() 41 0.04418 0.06144 0.124 3.44% Castro::clean_state() 62 0.108 0.1148 0.1187 3.29% Castro::computeInitialDt() 2 0.001705 0.05146 0.09712 2.69% Castro::initialize_advance() 10 0.06129 0.07134 0.07538 2.09% FabArray::setVal() 143 0.0599 0.06959 0.07238 2.01% Castro::computeTemp() 63 0.06228 0.06796 0.07162 1.99% Castro::do_new_sources() 10 0.05058 0.06227 0.06557 1.82% Amr::writePlotFile() 2 0.0632 0.06355 0.06388 1.77% Castro::reset_internal_energy(MultiFab) 63 0.04558 0.04956 0.05231 1.45% Castro::reset_internal_energy(Fab) 1008 0.04525 0.04925 0.05199 1.44% FabArray::ParallelCopy_nowait() 41 0.02601 0.04359 0.04904 1.36% Castro::do_old_sources() 10 0.03178 0.04531 0.04891 1.36% StateDataPhysBCFunct::() 41 0.03512 0.04202 0.04665 1.29% StateData::FillBoundary(geom) 41 0.03499 0.04189 0.04653 1.29% Castro::normalize_species() 62 0.04066 0.04154 0.0422 1.17% Castro::construct_new_source() 50 0.02256 0.02937 0.03127 0.87% Gravity::interpolate_monopole_grav() 21 0.02672 0.02756 0.02789 0.77% Castro::post_init() 1 0.02702 0.02733 0.02763 0.77% Castro::construct_new_gravity_source() 10 0.01792 0.0229 0.02432 0.67% VisMF::Write(FabArray) 2 0.01122 0.01238 0.01661 0.46% Castro::apply_source_to_state() 20 0.008568 0.01435 0.01643 0.46% MultiFab::Saxpy() 20 0.00852 0.0143 0.01637 0.45% Castro::post_timestep() 10 0.01532 0.01564 0.01603 0.44% FabArray::setDomainBndry() 41 0.006077 0.01208 0.01516 0.42% Castro::check_for_nan() 20 0.009795 0.0109 0.01221 0.34% MultiFab::contains_nan() 20 0.009764 0.01088 0.01218 0.34% Castro::Castro() 1 0.009034 0.009939 0.01211 0.34% Castro::construct_old_source() 50 0.004929 0.01009 0.01183 0.33% Castro::construct_old_gravity_source() 10 0.004884 0.01002 0.01174 0.33% Castro::initMFs() 1 0.005412 0.006308 0.008479 0.24% Castro::computeNewDt() 9 0.006993 0.007001 0.007008 0.19% Castro::enforce_min_density() 62 0.005419 0.006101 0.006632 0.18% AmrLevel::AmrLevel(dm) 1 0.004494 0.005091 0.006491 0.18% StateData::define() 4 0.004477 0.005071 0.006475 0.18% Castro::swap_state_time_levels() 10 0.002033 0.003609 0.003885 0.11% Castro::buildMetrics() 1 0.001392 0.0016 0.002096 0.06% Castro::post_regrid() 1 0.001603 0.001682 0.001803 0.05% Castro::finalize_do_advance() 10 0.0005421 0.001059 0.001295 0.04% Amr::InitAmr() 1 0.0002819 0.0003422 0.0004584 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.495e-05 0.00016 0.0002435 0.01% DistributionMapping::LeastUsedCPUs() 1 8.609e-06 0.0001538 0.0002365 0.01% Castro::enforce_consistent_e() 1 8.408e-05 8.917e-05 9.606e-05 0.00% FabArrayBase::getCPC() 41 7.446e-05 8.331e-05 9.59e-05 0.00% Amr::writeSmallPlotFile() 1 3.079e-05 5.707e-05 7.054e-05 0.00% Castro::finalize_advance() 10 5.518e-05 6.256e-05 6.816e-05 0.00% FabArrayBase::CPC::define() 2 2.196e-05 2.669e-05 3.089e-05 0.00% Castro::enforce_speed_limit() 62 2.355e-05 2.699e-05 3.011e-05 0.00% Amr::initSubcycle() 1 8.134e-06 1.03e-05 1.402e-05 0.00% Castro::create_source_corrector() 10 6.266e-06 1.096e-05 1.366e-05 0.00% Gravity::swapTimeLevels() 10 5.196e-06 1.1e-05 1.362e-05 0.00% Gravity::set_mass_offset() 10 7.515e-06 1.065e-05 1.257e-05 0.00% Castro::FluxRegCrseInit 10 5.127e-06 9.015e-06 1.187e-05 0.00% Castro::retry_advance_ctu() 10 3.733e-06 5.301e-06 6.439e-06 0.00% Castro::FluxRegFineAdd() 10 2.166e-06 2.429e-06 2.727e-06 0.00% DistributionMapping::Distribute() 1 1.008e-06 1.31e-06 1.571e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.05-36-g806108c5b892) finalized