MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.05-37-gb78921a2d80d) initialized Starting run at 05:38:28 UTC on 2022-05-30. Successfully read inputs file ... Castro git describe: 22.05-33-g9203058b8 AMReX git describe: 22.05-37-gb78921a2d Microphysics git describe: 22.05-2-g52173caf reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.013743749 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.357592 [STEP 1] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.336256477 [STEP 2] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.337103748 [STEP 3] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.336793397 [STEP 4] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.345060595 [STEP 5] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.340370907 [STEP 6] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.330950573 [STEP 7] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.331599919 [STEP 8] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.331864988 [STEP 9] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.332063072 [STEP 10] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009909807 seconds Ending run at 05:38:31 UTC on 2022-05-30. Run time = 3.59377783 Run time without initialization = 3.395613777 Average number of zones advanced per microsecond: 0.772 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.592 ... 3.593 ... 3.594 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.0551 2.3392 2.4518 68.22% Castro::do_advance_ctu() 10 0.03773 0.1512 0.4371 12.16% Gravity::make_radial_gravity() 21 0.3447 0.3582 0.3859 10.74% Castro::initData() 1 0.03839 0.08062 0.1345 3.74% Castro::estTimeStep() 21 0.02924 0.08403 0.1239 3.45% FabArray::ParallelCopy_finish() 41 0.03886 0.05883 0.1208 3.36% FabArray::setVal() 143 0.05912 0.06922 0.0724 2.01% Castro::reset_internal_energy(Fab) 1008 0.04606 0.04939 0.0515 1.43% FabArray::ParallelCopy_nowait() 41 0.0262 0.04299 0.04865 1.35% StateData::FillBoundary(geom) 41 0.0353 0.04142 0.04528 1.26% Castro::normalize_species() 62 0.03945 0.04155 0.04288 1.19% FillPatchIterator::Initialize 41 0.02033 0.03227 0.03677 1.02% Gravity::interpolate_monopole_grav() 21 0.02644 0.02752 0.028 0.78% Castro::construct_new_gravity_source() 10 0.02034 0.02351 0.02552 0.71% Castro::expand_state() 10 0.009646 0.01888 0.02243 0.62% Castro::computeTemp() 63 0.01726 0.01896 0.01989 0.55% Castro::initialize_do_advance() 10 0.009049 0.01649 0.01849 0.51% MultiFab::Saxpy() 20 0.008724 0.01429 0.01636 0.46% FabArray::setDomainBndry() 41 0.00495 0.01201 0.01544 0.43% VisMF::Write(FabArray) 2 0.01161 0.01209 0.01437 0.40% Gravity::get_new_grav_vector() 11 0.007187 0.01108 0.01281 0.36% Amr::writePlotFile() 2 0.009489 0.01167 0.01236 0.34% Castro::construct_old_gravity_source() 10 0.005022 0.0101 0.01192 0.33% MultiFab::contains_nan() 20 0.009318 0.01083 0.01187 0.33% Gravity::get_old_grav_vector() 10 0.005674 0.009469 0.01102 0.31% Castro::initialize_advance() 10 0.006197 0.009804 0.01053 0.29% Castro::construct_new_source() 50 0.004804 0.006388 0.006938 0.19% Castro::initMFs() 1 0.005409 0.005809 0.006915 0.19% Castro::enforce_min_density() 62 0.005242 0.006024 0.006509 0.18% main() 1 0.00336 0.004973 0.00535 0.15% StateData::define() 4 0.004521 0.004672 0.005036 0.14% Castro::swap_state_time_levels() 10 0.002871 0.003614 0.003862 0.11% Amr::coarseTimeStep() 10 0.0009524 0.001633 0.003157 0.09% Castro::buildMetrics() 1 0.001264 0.001316 0.001454 0.04% Castro::finalize_do_advance() 10 0.0005366 0.001047 0.001248 0.03% Amr::timeStep() 10 0.0001709 0.00022 0.0004793 0.01% Amr::InitAmr() 1 0.000245 0.0002759 0.0003989 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002933 0.0003064 0.0003162 0.01% Castro::clean_state() 62 0.0001485 0.0001729 0.0001894 0.01% DistributionMapping::LeastUsedCPUs() 1 8.201e-06 0.0001346 0.000168 0.00% StateDataPhysBCFunct::() 41 0.00011 0.0001358 0.0001613 0.00% Castro::enforce_consistent_e() 1 7.791e-05 8.737e-05 0.0001062 0.00% Castro::construct_old_source() 50 3.715e-05 7.507e-05 9.849e-05 0.00% Castro::Castro() 1 5.009e-05 7.33e-05 9.75e-05 0.00% FabArray::ParallelCopy() 41 6.474e-05 8.374e-05 9.342e-05 0.00% Castro::do_old_sources() 10 3.736e-05 6.751e-05 9.159e-05 0.00% Amr::FinalizeInit() 1 3.423e-06 1.444e-05 8.272e-05 0.00% Castro::do_new_sources() 10 4.158e-05 6.718e-05 8.008e-05 0.00% FillPatchSingleLevel 41 6.651e-05 7.168e-05 7.767e-05 0.00% Castro::construct_old_gravity() 10 3.449e-05 5.766e-05 7.528e-05 0.00% Castro::subcycle_advance_ctu() 10 3.639e-05 5.438e-05 7.332e-05 0.00% Amr::writeSmallPlotFile() 1 2.544e-05 4.545e-05 6.948e-05 0.00% FabArrayBase::getCPC() 41 5.24e-05 5.707e-05 6.437e-05 0.00% Castro::apply_source_to_state() 20 3.676e-05 4.915e-05 5.872e-05 0.00% Castro::construct_new_gravity() 10 3.507e-05 4.521e-05 5.824e-05 0.00% Castro::finalize_advance() 10 4.75e-05 5.042e-05 5.551e-05 0.00% Castro::advance() 10 2.812e-05 4.183e-05 5.194e-05 0.00% Amr::defBaseLevel() 1 2.513e-05 2.722e-05 3.174e-05 0.00% FabArrayBase::CPC::define() 2 2.318e-05 2.605e-05 2.988e-05 0.00% Castro::check_for_nan() 20 2.109e-05 2.585e-05 2.919e-05 0.00% Castro::enforce_speed_limit() 62 2.413e-05 2.619e-05 2.848e-05 0.00% Castro::post_timestep() 10 1.175e-05 1.854e-05 2.751e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.319e-05 1.719e-05 1.976e-05 0.00% Gravity::swapTimeLevels() 10 4.774e-06 1.157e-05 1.533e-05 0.00% Castro::create_source_corrector() 10 6.504e-06 1.033e-05 1.309e-05 0.00% Gravity::set_mass_offset() 10 7.071e-06 1.02e-05 1.251e-05 0.00% Castro::FluxRegCrseInit 10 6.631e-06 9.773e-06 1.204e-05 0.00% Castro::computeNewDt() 9 6.885e-06 9.676e-06 1.196e-05 0.00% Castro::post_init() 1 7.521e-06 9.145e-06 1.138e-05 0.00% Amr::initSubcycle() 1 8.045e-06 8.574e-06 9.376e-06 0.00% Amr::InitializeInit() 1 2.029e-06 2.714e-06 6.783e-06 0.00% Castro::retry_advance_ctu() 10 3.747e-06 5.348e-06 6.544e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.77e-06 4.674e-06 5.724e-06 0.00% Castro::post_regrid() 1 2.086e-06 3.441e-06 5.173e-06 0.00% Castro::computeInitialDt() 2 2.981e-06 3.859e-06 4.88e-06 0.00% Amr::init() 1 1.861e-06 2.247e-06 3.259e-06 0.00% Castro::FluxRegFineAdd() 10 1.505e-06 2.259e-06 2.854e-06 0.00% Amr::initialInit() 1 9.24e-07 1.267e-06 1.781e-06 0.00% DistributionMapping::Distribute() 1 9.8e-07 1.053e-06 1.225e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.592 3.593 3.594 100.00% Amr::coarseTimeStep() 10 3.38 3.38 3.38 94.06% Amr::timeStep() 10 3.369 3.371 3.371 93.81% Castro::advance() 10 3.354 3.355 3.355 93.36% Castro::subcycle_advance_ctu() 10 3.282 3.285 3.293 91.63% Castro::do_advance_ctu() 10 3.282 3.284 3.293 91.63% Castro::construct_ctu_hydro_source() 10 2.055 2.339 2.452 68.22% Gravity::make_radial_gravity() 21 0.3447 0.3582 0.3859 10.74% Gravity::get_new_grav_vector() 11 0.2322 0.2338 0.2354 6.55% Castro::construct_old_gravity() 10 0.2021 0.213 0.2335 6.50% Gravity::get_old_grav_vector() 10 0.2012 0.2122 0.233 6.48% FillPatchIterator::Initialize 41 0.181 0.1879 0.2099 5.84% Castro::construct_new_gravity() 10 0.2058 0.2072 0.2085 5.80% Amr::init() 1 0.1976 0.1978 0.1978 5.50% FillPatchSingleLevel 41 0.1305 0.1436 0.1846 5.14% Amr::initialInit() 1 0.1837 0.184 0.1843 5.13% Castro::initialize_do_advance() 10 0.1587 0.1712 0.1783 4.96% Amr::InitializeInit() 1 0.05664 0.09921 0.1542 4.29% Amr::defBaseLevel() 1 0.05664 0.0992 0.1542 4.29% FabArray::ParallelCopy() 41 0.08768 0.102 0.1471 4.09% Castro::initData() 1 0.04242 0.08466 0.1384 3.85% Castro::expand_state() 10 0.1161 0.1245 0.1296 3.61% Amr::FinalizeInit() 1 0.02996 0.08476 0.1275 3.55% Castro::estTimeStep() 21 0.02924 0.08403 0.1239 3.45% FabArray::ParallelCopy_finish() 41 0.03886 0.05883 0.1208 3.36% Castro::clean_state() 62 0.1076 0.1155 0.1189 3.31% Castro::computeInitialDt() 2 0.00175 0.05678 0.09936 2.76% Castro::initialize_advance() 10 0.06126 0.07026 0.07317 2.04% FabArray::setVal() 143 0.05912 0.06922 0.0724 2.01% Castro::computeTemp() 63 0.06363 0.06865 0.07171 2.00% Castro::do_new_sources() 10 0.05247 0.06334 0.06654 1.85% Castro::reset_internal_energy(MultiFab) 63 0.04637 0.04969 0.05182 1.44% Castro::reset_internal_energy(Fab) 1008 0.04606 0.04939 0.0515 1.43% Castro::do_old_sources() 10 0.0329 0.04516 0.0488 1.36% FabArray::ParallelCopy_nowait() 41 0.02629 0.04307 0.04873 1.36% StateDataPhysBCFunct::() 41 0.03542 0.04156 0.04542 1.26% StateData::FillBoundary(geom) 41 0.0353 0.04142 0.04528 1.26% Castro::normalize_species() 62 0.03945 0.04155 0.04288 1.19% Castro::construct_new_source() 50 0.02515 0.0299 0.03238 0.90% Gravity::interpolate_monopole_grav() 21 0.02644 0.02752 0.028 0.78% Castro::post_init() 1 0.02708 0.02731 0.0277 0.77% Castro::construct_new_gravity_source() 10 0.02034 0.02351 0.02552 0.71% Amr::writePlotFile() 2 0.02345 0.02376 0.02403 0.67% Castro::apply_source_to_state() 20 0.00876 0.01434 0.01642 0.46% MultiFab::Saxpy() 20 0.008724 0.01429 0.01636 0.46% Castro::post_timestep() 10 0.01466 0.01563 0.01612 0.45% FabArray::setDomainBndry() 41 0.00495 0.01201 0.01544 0.43% VisMF::Write(FabArray) 2 0.01161 0.01209 0.01437 0.40% Castro::construct_old_source() 50 0.005059 0.01017 0.01201 0.33% Castro::construct_old_gravity_source() 10 0.005022 0.0101 0.01192 0.33% Castro::check_for_nan() 20 0.009341 0.01085 0.0119 0.33% MultiFab::contains_nan() 20 0.009318 0.01083 0.01187 0.33% Castro::Castro() 1 0.009266 0.009691 0.01057 0.29% Castro::computeNewDt() 9 0.007071 0.007088 0.007102 0.20% Castro::initMFs() 1 0.005409 0.005809 0.006915 0.19% Castro::enforce_min_density() 62 0.005242 0.006024 0.006509 0.18% AmrLevel::AmrLevel(dm) 1 0.004536 0.004689 0.005056 0.14% StateData::define() 4 0.004521 0.004672 0.005036 0.14% Castro::swap_state_time_levels() 10 0.002871 0.003614 0.003862 0.11% Castro::post_regrid() 1 0.001523 0.001612 0.001834 0.05% Castro::buildMetrics() 1 0.001384 0.001444 0.001605 0.04% Castro::finalize_do_advance() 10 0.0005366 0.001047 0.001248 0.03% Amr::InitAmr() 1 0.0002531 0.0002844 0.0004072 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.32e-05 0.0001403 0.0001748 0.00% DistributionMapping::LeastUsedCPUs() 1 8.201e-06 0.0001346 0.000168 0.00% Castro::enforce_consistent_e() 1 7.791e-05 8.737e-05 0.0001062 0.00% FabArrayBase::getCPC() 41 7.772e-05 8.312e-05 8.997e-05 0.00% Amr::writeSmallPlotFile() 1 2.544e-05 4.545e-05 6.948e-05 0.00% Castro::finalize_advance() 10 5.665e-05 6.246e-05 6.892e-05 0.00% FabArrayBase::CPC::define() 2 2.318e-05 2.605e-05 2.988e-05 0.00% Castro::enforce_speed_limit() 62 2.413e-05 2.619e-05 2.848e-05 0.00% Gravity::swapTimeLevels() 10 4.774e-06 1.157e-05 1.533e-05 0.00% Castro::create_source_corrector() 10 6.504e-06 1.033e-05 1.309e-05 0.00% Gravity::set_mass_offset() 10 7.071e-06 1.02e-05 1.251e-05 0.00% Castro::FluxRegCrseInit 10 6.631e-06 9.773e-06 1.204e-05 0.00% Amr::initSubcycle() 1 8.045e-06 8.574e-06 9.376e-06 0.00% Castro::retry_advance_ctu() 10 3.747e-06 5.348e-06 6.544e-06 0.00% Castro::FluxRegFineAdd() 10 1.505e-06 2.259e-06 2.854e-06 0.00% DistributionMapping::Distribute() 1 9.8e-07 1.053e-06 1.225e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.05-37-gb78921a2d80d) finalized