MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.05-37-gb78921a2d80d) initialized Starting run at 05:38:07 UTC on 2022-05-31. Successfully read inputs file ... Castro git describe: 22.05-34-g67ce1b31a AMReX git describe: 22.05-37-gb78921a2d Microphysics git describe: 22.05-2-g52173caf reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.0144973 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.346323222 [STEP 1] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.335338082 [STEP 2] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.334987867 [STEP 3] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.336058893 [STEP 4] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.336725705 [STEP 5] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.344362404 [STEP 6] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.350493769 [STEP 7] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.335261605 [STEP 8] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.331400717 [STEP 9] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.331725387 [STEP 10] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009751952 seconds Ending run at 05:38:11 UTC on 2022-05-31. Run time = 3.576729816 Run time without initialization = 3.398835298 Average number of zones advanced per microsecond: 0.771 Average number of zones advanced per microsecond per rank: 0.096 TinyProfiler total time across processes [min...avg...max]: 3.576 ... 3.576 ... 3.577 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.0589 2.3593 2.4702 69.06% Castro::do_advance_ctu() 10 0.03249 0.1441 0.4468 12.49% Gravity::make_radial_gravity() 21 0.3368 0.3479 0.3768 10.54% FabArray::ParallelCopy_finish() 41 0.03985 0.05826 0.1241 3.47% Castro::initData() 1 0.03827 0.07727 0.1163 3.25% Castro::estTimeStep() 21 0.01959 0.06265 0.1124 3.14% FabArray::setVal() 143 0.05284 0.06972 0.07477 2.09% Castro::reset_internal_energy(Fab) 1008 0.04718 0.04961 0.0506 1.41% FabArray::ParallelCopy_nowait() 41 0.02542 0.04336 0.0492 1.38% StateData::FillBoundary(geom) 41 0.03484 0.04192 0.04599 1.29% Castro::normalize_species() 62 0.04063 0.04178 0.04221 1.18% FillPatchIterator::Initialize 41 0.01999 0.03224 0.03659 1.02% Gravity::interpolate_monopole_grav() 21 0.02665 0.02753 0.02793 0.78% Castro::construct_new_gravity_source() 10 0.01769 0.02273 0.02403 0.67% Castro::expand_state() 10 0.009622 0.01921 0.02271 0.63% Castro::computeTemp() 63 0.01811 0.01902 0.01965 0.55% Castro::initialize_do_advance() 10 0.008782 0.01646 0.01841 0.51% VisMF::Write(FabArray) 2 0.01157 0.0123 0.01618 0.45% MultiFab::Saxpy() 20 0.008502 0.0146 0.01617 0.45% FabArray::setDomainBndry() 41 0.006277 0.01182 0.01476 0.41% Amr::writePlotFile() 2 0.008304 0.01219 0.01311 0.37% Gravity::get_new_grav_vector() 11 0.009213 0.01176 0.01274 0.36% Castro::initialize_advance() 10 0.01125 0.0114 0.01179 0.33% Castro::construct_old_gravity_source() 10 0.004868 0.01024 0.01156 0.32% MultiFab::contains_nan() 20 0.009401 0.01084 0.01134 0.32% Gravity::get_old_grav_vector() 10 0.005501 0.009864 0.01111 0.31% Castro::construct_new_source() 50 0.004774 0.006534 0.007067 0.20% Castro::initMFs() 1 0.005538 0.005953 0.006503 0.18% Castro::enforce_min_density() 62 0.005264 0.00606 0.006411 0.18% main() 1 0.005087 0.005373 0.005692 0.16% StateData::define() 4 0.004523 0.004772 0.005054 0.14% Castro::swap_state_time_levels() 10 0.002035 0.003584 0.003827 0.11% Amr::coarseTimeStep() 10 0.0009718 0.001172 0.001571 0.04% Castro::buildMetrics() 1 0.001286 0.001366 0.001462 0.04% Castro::finalize_do_advance() 10 0.0005428 0.001009 0.001143 0.03% Amr::timeStep() 10 0.0001758 0.000234 0.0004603 0.01% Amr::InitAmr() 1 0.000259 0.0002856 0.0004134 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002962 0.0003096 0.0003184 0.01% StateDataPhysBCFunct::() 41 0.0001313 0.0001589 0.0001957 0.01% Castro::clean_state() 62 0.0001438 0.0001633 0.0001856 0.01% DistributionMapping::LeastUsedCPUs() 1 7.075e-06 0.0001465 0.0001712 0.00% FabArray::ParallelCopy() 41 6.01e-05 8.792e-05 0.0001126 0.00% Amr::FinalizeInit() 1 3.313e-06 1.608e-05 9.64e-05 0.00% Castro::construct_old_source() 50 3.104e-05 7.311e-05 9.048e-05 0.00% Castro::enforce_consistent_e() 1 7.612e-05 8.546e-05 8.99e-05 0.00% FillPatchSingleLevel 41 5.768e-05 6.766e-05 8.493e-05 0.00% Castro::do_old_sources() 10 3.585e-05 6.517e-05 7.636e-05 0.00% Castro::do_new_sources() 10 3.881e-05 6.427e-05 7.602e-05 0.00% Castro::Castro() 1 5.217e-05 6.295e-05 7.551e-05 0.00% Amr::writeSmallPlotFile() 1 2.355e-05 5.395e-05 7.195e-05 0.00% Castro::construct_old_gravity() 10 3.353e-05 5.212e-05 6.426e-05 0.00% Castro::subcycle_advance_ctu() 10 4.636e-05 5.356e-05 6.336e-05 0.00% Castro::apply_source_to_state() 20 3.633e-05 4.79e-05 5.611e-05 0.00% FabArrayBase::getCPC() 41 4.526e-05 5.151e-05 5.577e-05 0.00% Castro::finalize_advance() 10 5.062e-05 5.323e-05 5.505e-05 0.00% Castro::construct_new_gravity() 10 3.705e-05 4.507e-05 5.362e-05 0.00% Castro::advance() 10 3.287e-05 4.171e-05 4.67e-05 0.00% Amr::defBaseLevel() 1 2.647e-05 3.514e-05 4.179e-05 0.00% Castro::check_for_nan() 20 2.085e-05 2.566e-05 3.647e-05 0.00% FabArrayBase::CPC::define() 2 2.363e-05 2.649e-05 3.34e-05 0.00% Castro::post_timestep() 10 1.15e-05 2.142e-05 3.31e-05 0.00% Castro::enforce_speed_limit() 62 2.374e-05 2.663e-05 2.903e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.813e-05 2.363e-05 2.761e-05 0.00% Gravity::swapTimeLevels() 10 7.524e-06 1.152e-05 1.408e-05 0.00% Castro::create_source_corrector() 10 8.429e-06 1.136e-05 1.322e-05 0.00% Gravity::set_mass_offset() 10 7.099e-06 1.063e-05 1.322e-05 0.00% Castro::post_init() 1 9.03e-06 1.005e-05 1.314e-05 0.00% Castro::FluxRegCrseInit 10 7.418e-06 9.828e-06 1.144e-05 0.00% Castro::computeNewDt() 9 7.761e-06 9.322e-06 1.071e-05 0.00% Amr::initSubcycle() 1 8.491e-06 9.007e-06 9.547e-06 0.00% Amr::init() 1 2.224e-06 3.111e-06 8.379e-06 0.00% Amr::initialInit() 1 1.159e-06 2.181e-06 7.783e-06 0.00% Castro::retry_advance_ctu() 10 4.136e-06 5.635e-06 7.351e-06 0.00% Amr::InitializeInit() 1 2.208e-06 4.196e-06 7.31e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.955e-06 4.546e-06 6.457e-06 0.00% Castro::computeInitialDt() 2 3.071e-06 4.272e-06 4.789e-06 0.00% Castro::post_regrid() 1 1.78e-06 2.85e-06 4.255e-06 0.00% Castro::FluxRegFineAdd() 10 1.912e-06 2.211e-06 2.621e-06 0.00% DistributionMapping::Distribute() 1 9.87e-07 1.102e-06 1.262e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.576 3.576 3.577 100.00% Amr::coarseTimeStep() 10 3.383 3.383 3.383 94.60% Amr::timeStep() 10 3.374 3.374 3.375 94.35% Castro::advance() 10 3.358 3.358 3.358 93.90% Castro::subcycle_advance_ctu() 10 3.282 3.286 3.297 92.19% Castro::do_advance_ctu() 10 3.282 3.286 3.297 92.19% Castro::construct_ctu_hydro_source() 10 2.059 2.359 2.47 69.06% Gravity::make_radial_gravity() 21 0.3368 0.3479 0.3768 10.54% Castro::construct_old_gravity() 10 0.2028 0.2114 0.2334 6.53% Gravity::get_old_grav_vector() 10 0.2018 0.2106 0.2329 6.51% Gravity::get_new_grav_vector() 11 0.2248 0.2276 0.2287 6.39% FillPatchIterator::Initialize 41 0.1818 0.188 0.211 5.90% Castro::construct_new_gravity() 10 0.2024 0.2039 0.2048 5.73% FillPatchSingleLevel 41 0.1309 0.1439 0.1848 5.17% Amr::init() 1 0.1773 0.1775 0.1775 4.96% Castro::initialize_do_advance() 10 0.1579 0.167 0.1711 4.78% Amr::initialInit() 1 0.1626 0.1628 0.1629 4.56% FabArray::ParallelCopy() 41 0.08856 0.1018 0.1497 4.18% Amr::InitializeInit() 1 0.05716 0.09605 0.1359 3.80% Amr::defBaseLevel() 1 0.05716 0.09605 0.1359 3.80% FabArray::ParallelCopy_finish() 41 0.03985 0.05826 0.1241 3.47% Castro::expand_state() 10 0.1174 0.1202 0.1222 3.42% Castro::initData() 1 0.04194 0.08121 0.12 3.36% Castro::clean_state() 62 0.1108 0.1161 0.1182 3.30% Castro::estTimeStep() 21 0.01959 0.06265 0.1124 3.14% Amr::FinalizeInit() 1 0.02689 0.06673 0.1057 2.96% Castro::computeInitialDt() 2 0.001715 0.04152 0.08043 2.25% Castro::initialize_advance() 10 0.06035 0.07226 0.07603 2.13% FabArray::setVal() 143 0.05284 0.06972 0.07477 2.09% Castro::computeTemp() 63 0.0656 0.06894 0.07031 1.97% Castro::do_new_sources() 10 0.05033 0.06244 0.06547 1.83% Castro::reset_internal_energy(MultiFab) 63 0.04749 0.04992 0.05091 1.42% Castro::reset_internal_energy(Fab) 1008 0.04718 0.04961 0.0506 1.41% FabArray::ParallelCopy_nowait() 41 0.02551 0.04344 0.04927 1.38% Castro::do_old_sources() 10 0.03206 0.04597 0.0485 1.36% StateDataPhysBCFunct::() 41 0.03502 0.04208 0.04619 1.29% StateData::FillBoundary(geom) 41 0.03484 0.04192 0.04599 1.29% Castro::normalize_species() 62 0.04063 0.04178 0.04221 1.18% Castro::construct_new_source() 50 0.02246 0.02927 0.03109 0.87% Gravity::interpolate_monopole_grav() 21 0.02665 0.02753 0.02793 0.78% Castro::post_init() 1 0.02431 0.02454 0.02475 0.69% Amr::writePlotFile() 2 0.02438 0.02449 0.02468 0.69% Castro::construct_new_gravity_source() 10 0.01769 0.02273 0.02403 0.67% Castro::apply_source_to_state() 20 0.008539 0.01465 0.01623 0.45% VisMF::Write(FabArray) 2 0.01157 0.0123 0.01618 0.45% MultiFab::Saxpy() 20 0.008502 0.0146 0.01617 0.45% Castro::post_timestep() 10 0.0157 0.01585 0.01598 0.45% FabArray::setDomainBndry() 41 0.006277 0.01182 0.01476 0.41% Castro::construct_old_source() 50 0.004899 0.01032 0.01165 0.33% Castro::construct_old_gravity_source() 10 0.004868 0.01024 0.01156 0.32% Castro::check_for_nan() 20 0.009423 0.01086 0.01138 0.32% MultiFab::contains_nan() 20 0.009401 0.01084 0.01134 0.32% Castro::Castro() 1 0.009198 0.009855 0.0106 0.30% Castro::computeNewDt() 9 0.006975 0.006984 0.006993 0.20% Castro::initMFs() 1 0.005538 0.005953 0.006503 0.18% Castro::enforce_min_density() 62 0.005264 0.00606 0.006411 0.18% AmrLevel::AmrLevel(dm) 1 0.004545 0.004796 0.005081 0.14% StateData::define() 4 0.004523 0.004772 0.005054 0.14% Castro::swap_state_time_levels() 10 0.002035 0.003584 0.003827 0.11% Castro::post_regrid() 1 0.001496 0.00158 0.001651 0.05% Castro::buildMetrics() 1 0.001399 0.001496 0.00161 0.05% Castro::finalize_do_advance() 10 0.0005428 0.001009 0.001143 0.03% Amr::InitAmr() 1 0.0002676 0.0002946 0.000423 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.248e-05 0.0001522 0.0001785 0.00% DistributionMapping::LeastUsedCPUs() 1 7.075e-06 0.0001465 0.0001712 0.00% Castro::enforce_consistent_e() 1 7.612e-05 8.546e-05 8.99e-05 0.00% FabArrayBase::getCPC() 41 7.123e-05 7.8e-05 8.635e-05 0.00% Amr::writeSmallPlotFile() 1 2.355e-05 5.395e-05 7.195e-05 0.00% Castro::finalize_advance() 10 6.074e-05 6.527e-05 6.866e-05 0.00% FabArrayBase::CPC::define() 2 2.363e-05 2.649e-05 3.34e-05 0.00% Castro::enforce_speed_limit() 62 2.374e-05 2.663e-05 2.903e-05 0.00% Gravity::swapTimeLevels() 10 7.524e-06 1.152e-05 1.408e-05 0.00% Castro::create_source_corrector() 10 8.429e-06 1.136e-05 1.322e-05 0.00% Gravity::set_mass_offset() 10 7.099e-06 1.063e-05 1.322e-05 0.00% Castro::FluxRegCrseInit 10 7.418e-06 9.828e-06 1.144e-05 0.00% Amr::initSubcycle() 1 8.491e-06 9.007e-06 9.547e-06 0.00% Castro::retry_advance_ctu() 10 4.136e-06 5.635e-06 7.351e-06 0.00% Castro::FluxRegFineAdd() 10 1.912e-06 2.211e-06 2.621e-06 0.00% DistributionMapping::Distribute() 1 9.87e-07 1.102e-06 1.262e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.05-37-gb78921a2d80d) finalized