MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.05-39-gf24582df5fec) initialized Starting run at 05:38:01 UTC on 2022-06-01. Successfully read inputs file ... Castro git describe: 22.05-38-g04a5f0316 AMReX git describe: 22.05-39-gf24582df5 Microphysics git describe: 22.05-2-g52173caf reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.013885182 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.344684422 [STEP 1] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.333776934 [STEP 2] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.335722361 [STEP 3] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.334435493 [STEP 4] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.333731696 [STEP 5] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.341874116 [STEP 6] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.329862471 [STEP 7] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.327279897 [STEP 8] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.328354117 [STEP 9] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.32842811 [STEP 10] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009670762 seconds Ending run at 05:38:05 UTC on 2022-06-01. Run time = 3.552617257 Run time without initialization = 3.353986407 Average number of zones advanced per microsecond: 0.782 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.55 ... 3.552 ... 3.553 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.0993 2.3352 2.4277 68.33% Gravity::make_radial_gravity() 21 0.3339 0.3499 0.3766 10.60% Castro::do_advance_ctu() 10 0.03446 0.1265 0.3621 10.19% Castro::initData() 1 0.03849 0.08224 0.1354 3.81% Castro::estTimeStep() 21 0.02032 0.07778 0.1346 3.79% FabArray::ParallelCopy_finish() 41 0.03881 0.05762 0.1224 3.44% FabArray::setVal() 143 0.05094 0.06842 0.07357 2.07% Castro::reset_internal_energy(Fab) 1008 0.04725 0.04952 0.05142 1.45% FabArray::ParallelCopy_nowait() 41 0.02618 0.04305 0.04873 1.37% StateData::FillBoundary(geom) 41 0.03682 0.04232 0.04639 1.31% Castro::normalize_species() 62 0.04137 0.04187 0.04264 1.20% FillPatchIterator::Initialize 41 0.02049 0.03216 0.03626 1.02% Gravity::interpolate_monopole_grav() 21 0.02697 0.02768 0.02799 0.79% Castro::construct_new_gravity_source() 10 0.0179 0.02285 0.02432 0.68% Castro::expand_state() 10 0.009684 0.01879 0.02304 0.65% Castro::computeTemp() 63 0.01758 0.01853 0.01989 0.56% Castro::initialize_do_advance() 10 0.008874 0.01629 0.01858 0.52% MultiFab::Saxpy() 20 0.01174 0.01501 0.01622 0.46% FabArray::setDomainBndry() 41 0.004919 0.01201 0.01535 0.43% VisMF::Write(FabArray) 2 0.01115 0.01178 0.01443 0.41% Amr::writePlotFile() 2 0.009325 0.01204 0.01282 0.36% Gravity::get_new_grav_vector() 11 0.008789 0.01134 0.01256 0.35% MultiFab::contains_nan() 20 0.009359 0.01106 0.01237 0.35% Castro::construct_old_gravity_source() 10 0.004897 0.01041 0.0117 0.33% Castro::initialize_advance() 10 0.007064 0.01034 0.01094 0.31% Gravity::get_old_grav_vector() 10 0.00576 0.00967 0.01085 0.31% Castro::construct_new_source() 50 0.004868 0.006511 0.007128 0.20% Castro::initMFs() 1 0.005311 0.00571 0.006872 0.19% Castro::enforce_min_density() 62 0.005284 0.006111 0.006586 0.19% main() 1 0.003344 0.005089 0.005543 0.16% StateData::define() 4 0.004532 0.00469 0.005073 0.14% Castro::swap_state_time_levels() 10 0.002841 0.003619 0.003853 0.11% Amr::coarseTimeStep() 10 0.0007359 0.001397 0.002619 0.07% Castro::buildMetrics() 1 0.001281 0.001341 0.00149 0.04% Castro::finalize_do_advance() 10 0.0005413 0.0009701 0.001101 0.03% Amr::timeStep() 10 0.0001756 0.0002279 0.0004562 0.01% Amr::InitAmr() 1 0.00027 0.0002946 0.0003694 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002953 0.0003024 0.0003132 0.01% Castro::clean_state() 62 0.0001558 0.0001676 0.0001822 0.01% StateDataPhysBCFunct::() 41 0.000104 0.0001449 0.0001581 0.00% DistributionMapping::LeastUsedCPUs() 1 7.217e-06 8.318e-05 0.0001088 0.00% Castro::enforce_consistent_e() 1 8.019e-05 8.997e-05 0.0001047 0.00% Castro::construct_old_source() 50 4.011e-05 7.216e-05 9.476e-05 0.00% FabArray::ParallelCopy() 41 6.94e-05 8.413e-05 9.017e-05 0.00% Castro::subcycle_advance_ctu() 10 3.218e-05 5.478e-05 8.389e-05 0.00% Castro::Castro() 1 4.976e-05 6.728e-05 7.873e-05 0.00% Castro::do_new_sources() 10 4.116e-05 6.184e-05 7.836e-05 0.00% FillPatchSingleLevel 41 6.324e-05 7.028e-05 7.755e-05 0.00% Castro::do_old_sources() 10 4.011e-05 6.492e-05 7.684e-05 0.00% Amr::FinalizeInit() 1 3.544e-06 1.248e-05 6.686e-05 0.00% Castro::construct_old_gravity() 10 3.768e-05 5.371e-05 6.353e-05 0.00% FabArrayBase::getCPC() 41 4.726e-05 5.22e-05 5.751e-05 0.00% Castro::finalize_advance() 10 4.697e-05 5.22e-05 5.689e-05 0.00% Castro::construct_new_gravity() 10 3.863e-05 4.525e-05 5.687e-05 0.00% Castro::apply_source_to_state() 20 3.678e-05 4.608e-05 5.491e-05 0.00% Amr::writeSmallPlotFile() 1 2.486e-05 4.415e-05 5.327e-05 0.00% Castro::advance() 10 2.984e-05 4.315e-05 4.868e-05 0.00% FabArrayBase::CPC::define() 2 2.357e-05 2.899e-05 4.562e-05 0.00% Amr::defBaseLevel() 1 2.721e-05 3.056e-05 3.87e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.469e-05 2.5e-05 3.702e-05 0.00% Castro::enforce_speed_limit() 62 2.276e-05 2.81e-05 3.32e-05 0.00% Castro::check_for_nan() 20 2.189e-05 2.532e-05 2.772e-05 0.00% Castro::post_timestep() 10 1.48e-05 2.118e-05 2.706e-05 0.00% Castro::create_source_corrector() 10 5.957e-06 1.184e-05 1.766e-05 0.00% Castro::post_init() 1 8.546e-06 1.092e-05 1.755e-05 0.00% Amr::initSubcycle() 1 8.216e-06 1.012e-05 1.5e-05 0.00% Gravity::swapTimeLevels() 10 6.316e-06 1.178e-05 1.495e-05 0.00% Gravity::set_mass_offset() 10 7.081e-06 1.087e-05 1.331e-05 0.00% Castro::computeNewDt() 9 7.22e-06 9.943e-06 1.286e-05 0.00% Castro::FluxRegCrseInit 10 5.845e-06 9.393e-06 1.156e-05 0.00% Castro::retry_advance_ctu() 10 3.339e-06 6.404e-06 9.479e-06 0.00% Amr::InitializeInit() 1 2.225e-06 3.38e-06 6.742e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.757e-06 4.602e-06 5.93e-06 0.00% Castro::post_regrid() 1 1.935e-06 3.311e-06 5.343e-06 0.00% Castro::computeInitialDt() 2 3.647e-06 4.154e-06 4.969e-06 0.00% Castro::FluxRegFineAdd() 10 1.614e-06 2.353e-06 2.947e-06 0.00% Amr::init() 1 2.026e-06 2.354e-06 2.847e-06 0.00% Amr::initialInit() 1 1.141e-06 1.504e-06 2.581e-06 0.00% DistributionMapping::Distribute() 1 1.003e-06 1.105e-06 1.302e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.55 3.552 3.553 100.00% Amr::coarseTimeStep() 10 3.339 3.339 3.339 93.98% Amr::timeStep() 10 3.328 3.329 3.33 93.72% Castro::advance() 10 3.312 3.313 3.313 93.25% Castro::subcycle_advance_ctu() 10 3.238 3.243 3.258 91.70% Castro::do_advance_ctu() 10 3.238 3.243 3.258 91.70% Castro::construct_ctu_hydro_source() 10 2.099 2.335 2.428 68.33% Gravity::make_radial_gravity() 21 0.3339 0.3499 0.3766 10.60% Castro::construct_old_gravity() 10 0.1971 0.211 0.2315 6.52% Gravity::get_old_grav_vector() 10 0.1962 0.2102 0.2309 6.50% Gravity::get_new_grav_vector() 11 0.226 0.229 0.2303 6.48% FillPatchIterator::Initialize 41 0.1791 0.1875 0.213 5.99% Castro::construct_new_gravity() 10 0.2011 0.2032 0.2042 5.75% Amr::init() 1 0.1981 0.1982 0.1982 5.58% FillPatchSingleLevel 41 0.1281 0.1434 0.1876 5.28% Amr::initialInit() 1 0.1839 0.1841 0.1843 5.19% Castro::initialize_do_advance() 10 0.1591 0.1666 0.1729 4.87% Amr::InitializeInit() 1 0.05684 0.1008 0.1552 4.37% Amr::defBaseLevel() 1 0.05684 0.1008 0.1552 4.37% FabArray::ParallelCopy() 41 0.08658 0.1008 0.1487 4.19% Castro::initData() 1 0.04271 0.08634 0.1394 3.92% Castro::estTimeStep() 21 0.02032 0.07778 0.1346 3.79% Castro::expand_state() 10 0.1157 0.1201 0.1275 3.59% Amr::FinalizeInit() 1 0.02885 0.08327 0.1274 3.59% FabArray::ParallelCopy_finish() 41 0.03881 0.05762 0.1224 3.44% Castro::clean_state() 62 0.1122 0.1156 0.1188 3.34% Castro::computeInitialDt() 2 0.001816 0.05614 0.1001 2.82% Castro::initialize_advance() 10 0.05439 0.0697 0.07456 2.10% FabArray::setVal() 143 0.05094 0.06842 0.07357 2.07% Castro::computeTemp() 63 0.06567 0.06836 0.07161 2.02% Castro::do_new_sources() 10 0.05089 0.0623 0.06522 1.84% Castro::reset_internal_energy(MultiFab) 63 0.04754 0.04982 0.05172 1.46% Castro::reset_internal_energy(Fab) 1008 0.04725 0.04952 0.05142 1.45% FabArray::ParallelCopy_nowait() 41 0.02626 0.04313 0.04881 1.37% Castro::do_old_sources() 10 0.03701 0.04664 0.04881 1.37% StateDataPhysBCFunct::() 41 0.03696 0.04247 0.04655 1.31% StateData::FillBoundary(geom) 41 0.03682 0.04232 0.04639 1.31% Castro::normalize_species() 62 0.04137 0.04187 0.04264 1.20% Castro::construct_new_source() 50 0.02277 0.02936 0.03116 0.88% Gravity::interpolate_monopole_grav() 21 0.02697 0.02768 0.02799 0.79% Castro::post_init() 1 0.02616 0.02659 0.02685 0.76% Castro::construct_new_gravity_source() 10 0.0179 0.02285 0.02432 0.68% Amr::writePlotFile() 2 0.02363 0.02381 0.02402 0.68% Castro::post_timestep() 10 0.01516 0.01593 0.01661 0.47% Castro::apply_source_to_state() 20 0.01177 0.01505 0.01628 0.46% MultiFab::Saxpy() 20 0.01174 0.01501 0.01622 0.46% FabArray::setDomainBndry() 41 0.004919 0.01201 0.01535 0.43% VisMF::Write(FabArray) 2 0.01115 0.01178 0.01443 0.41% Castro::check_for_nan() 20 0.009382 0.01109 0.0124 0.35% MultiFab::contains_nan() 20 0.009359 0.01106 0.01237 0.35% Castro::construct_old_source() 50 0.004941 0.01048 0.01178 0.33% Castro::construct_old_gravity_source() 10 0.004897 0.01041 0.0117 0.33% Castro::Castro() 1 0.009321 0.009661 0.01054 0.30% Castro::computeNewDt() 9 0.00733 0.007347 0.007356 0.21% Castro::initMFs() 1 0.005311 0.00571 0.006872 0.19% Castro::enforce_min_density() 62 0.005284 0.006111 0.006586 0.19% AmrLevel::AmrLevel(dm) 1 0.004556 0.004715 0.00511 0.14% StateData::define() 4 0.004532 0.00469 0.005073 0.14% Castro::swap_state_time_levels() 10 0.002841 0.003619 0.003853 0.11% Castro::post_regrid() 1 0.001514 0.001608 0.001827 0.05% Castro::buildMetrics() 1 0.001403 0.001468 0.001639 0.05% Castro::finalize_do_advance() 10 0.0005413 0.0009701 0.001101 0.03% Amr::InitAmr() 1 0.0002793 0.0003047 0.0003776 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.21e-05 8.888e-05 0.0001155 0.00% DistributionMapping::LeastUsedCPUs() 1 7.217e-06 8.318e-05 0.0001088 0.00% Castro::enforce_consistent_e() 1 8.019e-05 8.997e-05 0.0001047 0.00% FabArrayBase::getCPC() 41 7.181e-05 8.119e-05 9.443e-05 0.00% Castro::finalize_advance() 10 5.455e-05 6.395e-05 7.064e-05 0.00% Amr::writeSmallPlotFile() 1 2.486e-05 4.415e-05 5.327e-05 0.00% FabArrayBase::CPC::define() 2 2.357e-05 2.899e-05 4.562e-05 0.00% Castro::enforce_speed_limit() 62 2.276e-05 2.81e-05 3.32e-05 0.00% Castro::create_source_corrector() 10 5.957e-06 1.184e-05 1.766e-05 0.00% Amr::initSubcycle() 1 8.216e-06 1.012e-05 1.5e-05 0.00% Gravity::swapTimeLevels() 10 6.316e-06 1.178e-05 1.495e-05 0.00% Gravity::set_mass_offset() 10 7.081e-06 1.087e-05 1.331e-05 0.00% Castro::FluxRegCrseInit 10 5.845e-06 9.393e-06 1.156e-05 0.00% Castro::retry_advance_ctu() 10 3.339e-06 6.404e-06 9.479e-06 0.00% Castro::FluxRegFineAdd() 10 1.614e-06 2.353e-06 2.947e-06 0.00% DistributionMapping::Distribute() 1 1.003e-06 1.105e-06 1.302e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.05-39-gf24582df5fec) finalized