MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.06-3-g6e907ff7cf8e) initialized Starting run at 17:41:08 UTC on 2022-06-02. Successfully read inputs file ... Castro git describe: 22.05-40-g9d591dd1e AMReX git describe: 22.06-3-g6e907ff7c Microphysics git describe: 22.06 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014140877 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.350415973 [STEP 1] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.337068804 [STEP 2] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.336616013 [STEP 3] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.336416802 [STEP 4] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.345880546 [STEP 5] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.344175263 [STEP 6] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.330348668 [STEP 7] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.332283777 [STEP 8] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.331707429 [STEP 9] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.331908799 [STEP 10] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009915964 seconds Ending run at 17:41:12 UTC on 2022-06-02. Run time = 3.609971782 Run time without initialization = 3.393455911 Average number of zones advanced per microsecond: 0.772 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.607 ... 3.609 ... 3.61 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1130 2.3577 2.4547 68.00% Castro::do_advance_ctu() 10 0.02889 0.1292 0.3762 10.42% Gravity::make_radial_gravity() 21 0.3376 0.3519 0.3756 10.40% Castro::initData() 1 0.03772 0.08858 0.1492 4.13% Castro::estTimeStep() 21 0.02851 0.09443 0.1464 4.05% FabArray::ParallelCopy_finish() 41 0.04082 0.06167 0.1263 3.50% FabArray::setVal() 143 0.05545 0.06688 0.07019 1.94% Castro::reset_internal_energy(Fab) 1008 0.0477 0.05055 0.05206 1.44% FabArray::ParallelCopy_nowait() 41 0.02608 0.04309 0.04856 1.35% StateData::FillBoundary(geom) 41 0.03789 0.04226 0.04647 1.29% Castro::normalize_species() 62 0.04219 0.04249 0.04316 1.20% FillPatchIterator::Initialize 41 0.02021 0.03269 0.03722 1.03% Gravity::interpolate_monopole_grav() 21 0.02717 0.02778 0.02807 0.78% Castro::construct_new_gravity_source() 10 0.02096 0.02351 0.02522 0.70% Castro::expand_state() 10 0.009576 0.01811 0.02144 0.59% Castro::computeTemp() 63 0.01842 0.01943 0.02052 0.57% Castro::initialize_do_advance() 10 0.0091 0.01674 0.01877 0.52% MultiFab::Saxpy() 20 0.008682 0.01433 0.01624 0.45% FabArray::setDomainBndry() 41 0.004905 0.01246 0.01578 0.44% VisMF::Write(FabArray) 2 0.01169 0.01243 0.01493 0.41% Gravity::get_new_grav_vector() 11 0.007455 0.01147 0.01408 0.39% MultiFab::contains_nan() 20 0.009537 0.01111 0.01269 0.35% Amr::writePlotFile() 2 0.009338 0.01182 0.01255 0.35% Castro::construct_old_gravity_source() 10 0.005004 0.01011 0.01199 0.33% Gravity::get_old_grav_vector() 10 0.005835 0.009394 0.01094 0.30% Castro::initialize_advance() 10 0.003283 0.008621 0.009452 0.26% Castro::initMFs() 1 0.005484 0.006542 0.008483 0.23% Castro::construct_new_source() 50 0.004917 0.006506 0.007122 0.20% Castro::enforce_min_density() 62 0.006011 0.006665 0.007025 0.19% StateData::define() 4 0.004565 0.005326 0.006729 0.19% main() 1 0.003196 0.005115 0.006025 0.17% Castro::swap_state_time_levels() 10 0.002896 0.003779 0.00435 0.12% Amr::coarseTimeStep() 10 0.0009434 0.00147 0.002842 0.08% Castro::buildMetrics() 1 0.001296 0.001522 0.00193 0.05% Castro::finalize_do_advance() 10 0.000533 0.00108 0.001265 0.04% Amr::timeStep() 10 0.0001698 0.0002276 0.0005199 0.01% Amr::InitAmr() 1 0.0002763 0.0003373 0.0004521 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002985 0.0003205 0.0003357 0.01% DistributionMapping::LeastUsedCPUs() 1 7.956e-06 0.0001387 0.000199 0.01% Castro::clean_state() 62 0.0001322 0.0001553 0.0001736 0.00% StateDataPhysBCFunct::() 41 0.0001015 0.0001219 0.0001438 0.00% Castro::enforce_consistent_e() 1 7.74e-05 9.497e-05 0.0001403 0.00% Castro::construct_old_source() 50 2.958e-05 7.311e-05 9.258e-05 0.00% FabArray::ParallelCopy() 41 5.619e-05 7.584e-05 8.678e-05 0.00% Amr::FinalizeInit() 1 3.69e-06 1.545e-05 8.641e-05 0.00% Castro::do_old_sources() 10 3.397e-05 6.36e-05 7.963e-05 0.00% FillPatchSingleLevel 41 5.335e-05 6.952e-05 7.64e-05 0.00% Castro::do_new_sources() 10 3.85e-05 6.353e-05 7.376e-05 0.00% Amr::writeSmallPlotFile() 1 3.134e-05 6.042e-05 7.118e-05 0.00% Castro::Castro() 1 4.871e-05 5.811e-05 6.933e-05 0.00% FabArrayBase::getCPC() 41 4.932e-05 5.595e-05 6.721e-05 0.00% Castro::subcycle_advance_ctu() 10 3.153e-05 5.176e-05 6.511e-05 0.00% Castro::construct_old_gravity() 10 3.732e-05 5.394e-05 6.179e-05 0.00% Castro::apply_source_to_state() 20 2.89e-05 4.673e-05 5.752e-05 0.00% Castro::finalize_advance() 10 4.597e-05 5.017e-05 5.523e-05 0.00% Castro::construct_new_gravity() 10 3.69e-05 4.555e-05 5.512e-05 0.00% Castro::advance() 10 2.551e-05 3.858e-05 4.489e-05 0.00% Amr::defBaseLevel() 1 2.634e-05 3.158e-05 3.933e-05 0.00% Castro::enforce_speed_limit() 62 2.245e-05 2.753e-05 3.239e-05 0.00% FabArrayBase::CPC::define() 2 2.341e-05 2.673e-05 3.17e-05 0.00% Castro::check_for_nan() 20 1.962e-05 2.552e-05 3.023e-05 0.00% Castro::post_timestep() 10 1.289e-05 2.098e-05 2.691e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.48e-05 1.7e-05 2.231e-05 0.00% Gravity::swapTimeLevels() 10 5.25e-06 1.207e-05 1.613e-05 0.00% Castro::post_init() 1 8.393e-06 1.059e-05 1.531e-05 0.00% Amr::initSubcycle() 1 8.187e-06 1.03e-05 1.418e-05 0.00% Castro::create_source_corrector() 10 6.205e-06 1.115e-05 1.403e-05 0.00% Gravity::set_mass_offset() 10 7.8e-06 1.055e-05 1.179e-05 0.00% Castro::computeNewDt() 9 8.068e-06 9.386e-06 1.098e-05 0.00% Castro::FluxRegCrseInit 10 5.872e-06 9.194e-06 1.083e-05 0.00% Castro::post_regrid() 1 2.027e-06 4.488e-06 9.389e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.676e-06 5.554e-06 7.078e-06 0.00% Castro::retry_advance_ctu() 10 4.24e-06 6.129e-06 6.999e-06 0.00% Amr::InitializeInit() 1 2.107e-06 3.056e-06 6.587e-06 0.00% Castro::computeInitialDt() 2 3.167e-06 4.292e-06 5.658e-06 0.00% Castro::FluxRegFineAdd() 10 1.954e-06 2.465e-06 3.301e-06 0.00% Amr::init() 1 1.819e-06 2.311e-06 2.635e-06 0.00% Amr::initialInit() 1 1.175e-06 1.431e-06 1.938e-06 0.00% DistributionMapping::Distribute() 1 9.98e-07 1.346e-06 1.557e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.607 3.609 3.61 100.00% Amr::coarseTimeStep() 10 3.378 3.378 3.378 93.56% Amr::timeStep() 10 3.366 3.368 3.368 93.30% Castro::advance() 10 3.351 3.351 3.351 92.83% Castro::subcycle_advance_ctu() 10 3.28 3.283 3.294 91.25% Castro::do_advance_ctu() 10 3.28 3.283 3.294 91.25% Castro::construct_ctu_hydro_source() 10 2.113 2.358 2.455 68.00% Gravity::make_radial_gravity() 21 0.3376 0.3519 0.3756 10.40% Gravity::get_new_grav_vector() 11 0.2269 0.23 0.2318 6.42% Castro::construct_old_gravity() 10 0.1998 0.2116 0.2311 6.40% Gravity::get_old_grav_vector() 10 0.1989 0.2107 0.2306 6.39% Amr::init() 1 0.2159 0.2161 0.2161 5.99% FillPatchIterator::Initialize 41 0.184 0.1925 0.2157 5.98% Castro::construct_new_gravity() 10 0.2013 0.2035 0.2052 5.69% Amr::initialInit() 1 0.2016 0.2018 0.202 5.60% FillPatchSingleLevel 41 0.1317 0.1474 0.1906 5.28% Castro::initialize_do_advance() 10 0.1657 0.1753 0.1826 5.06% Amr::InitializeInit() 1 0.05526 0.1082 0.172 4.76% Amr::defBaseLevel() 1 0.05526 0.1082 0.172 4.76% Castro::initData() 1 0.04172 0.09266 0.1529 4.24% FabArray::ParallelCopy() 41 0.08877 0.1049 0.1526 4.23% Amr::FinalizeInit() 1 0.0297 0.09359 0.1466 4.06% Castro::estTimeStep() 21 0.02851 0.09443 0.1464 4.05% Castro::expand_state() 10 0.1214 0.1277 0.1335 3.70% FabArray::ParallelCopy_finish() 41 0.04082 0.06167 0.1263 3.50% Castro::clean_state() 62 0.1142 0.1186 0.1215 3.37% Castro::computeInitialDt() 2 0.001787 0.06569 0.1187 3.29% Castro::computeTemp() 63 0.06642 0.07031 0.07291 2.02% Castro::initialize_advance() 10 0.05623 0.06832 0.07132 1.98% FabArray::setVal() 143 0.05545 0.06688 0.07019 1.94% Castro::do_new_sources() 10 0.05503 0.06379 0.06634 1.84% Castro::reset_internal_energy(MultiFab) 63 0.048 0.05087 0.05239 1.45% Castro::reset_internal_energy(Fab) 1008 0.0477 0.05055 0.05206 1.44% Castro::do_old_sources() 10 0.03354 0.04534 0.04879 1.35% FabArray::ParallelCopy_nowait() 41 0.02617 0.04317 0.04864 1.35% StateDataPhysBCFunct::() 41 0.038 0.04239 0.04661 1.29% StateData::FillBoundary(geom) 41 0.03789 0.04226 0.04647 1.29% Castro::normalize_species() 62 0.04219 0.04249 0.04316 1.20% Castro::construct_new_source() 50 0.02588 0.03002 0.03091 0.86% Gravity::interpolate_monopole_grav() 21 0.02717 0.02778 0.02807 0.78% Castro::post_init() 1 0.02658 0.0272 0.02747 0.76% Castro::construct_new_gravity_source() 10 0.02096 0.02351 0.02522 0.70% Amr::writePlotFile() 2 0.02405 0.02425 0.02446 0.68% Castro::post_timestep() 10 0.01536 0.0164 0.01687 0.47% Castro::apply_source_to_state() 20 0.008711 0.01438 0.0163 0.45% MultiFab::Saxpy() 20 0.008682 0.01433 0.01624 0.45% FabArray::setDomainBndry() 41 0.004905 0.01246 0.01578 0.44% VisMF::Write(FabArray) 2 0.01169 0.01243 0.01493 0.41% Castro::check_for_nan() 20 0.009556 0.01114 0.01272 0.35% MultiFab::contains_nan() 20 0.009537 0.01111 0.01269 0.35% Castro::Castro() 1 0.00865 0.01002 0.01224 0.34% Castro::construct_old_source() 50 0.005034 0.01018 0.01208 0.33% Castro::construct_old_gravity_source() 10 0.005004 0.01011 0.01199 0.33% Castro::initMFs() 1 0.005484 0.006542 0.008483 0.23% Castro::computeNewDt() 9 0.007339 0.007346 0.007352 0.20% Castro::enforce_min_density() 62 0.006011 0.006665 0.007025 0.19% AmrLevel::AmrLevel(dm) 1 0.004581 0.005343 0.006749 0.19% StateData::define() 4 0.004565 0.005326 0.006729 0.19% Castro::swap_state_time_levels() 10 0.002896 0.003779 0.00435 0.12% Castro::buildMetrics() 1 0.001406 0.001673 0.002155 0.06% Castro::post_regrid() 1 0.001522 0.001674 0.00207 0.06% Castro::finalize_do_advance() 10 0.000533 0.00108 0.001265 0.04% Amr::InitAmr() 1 0.0002854 0.0003476 0.0004663 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.449e-05 0.0001456 0.000207 0.01% DistributionMapping::LeastUsedCPUs() 1 7.956e-06 0.0001387 0.000199 0.01% Castro::enforce_consistent_e() 1 7.74e-05 9.497e-05 0.0001403 0.00% FabArrayBase::getCPC() 41 7.486e-05 8.268e-05 9.604e-05 0.00% Amr::writeSmallPlotFile() 1 3.134e-05 6.042e-05 7.118e-05 0.00% Castro::finalize_advance() 10 5.569e-05 6.183e-05 6.936e-05 0.00% Castro::enforce_speed_limit() 62 2.245e-05 2.753e-05 3.239e-05 0.00% FabArrayBase::CPC::define() 2 2.341e-05 2.673e-05 3.17e-05 0.00% Gravity::swapTimeLevels() 10 5.25e-06 1.207e-05 1.613e-05 0.00% Amr::initSubcycle() 1 8.187e-06 1.03e-05 1.418e-05 0.00% Castro::create_source_corrector() 10 6.205e-06 1.115e-05 1.403e-05 0.00% Gravity::set_mass_offset() 10 7.8e-06 1.055e-05 1.179e-05 0.00% Castro::FluxRegCrseInit 10 5.872e-06 9.194e-06 1.083e-05 0.00% Castro::retry_advance_ctu() 10 4.24e-06 6.129e-06 6.999e-06 0.00% Castro::FluxRegFineAdd() 10 1.954e-06 2.465e-06 3.301e-06 0.00% DistributionMapping::Distribute() 1 9.98e-07 1.346e-06 1.557e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.06-3-g6e907ff7cf8e) finalized