MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.06-5-gc96e79e8409b) initialized Starting run at 22:29:20 UTC on 2022-06-02. Successfully read inputs file ... Castro git describe: 22.05-41-gc5d593e8f AMReX git describe: 22.06-5-gc96e79e84 Microphysics git describe: 22.06 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.047944815 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.396230142 [STEP 1] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.335572128 [STEP 2] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.33669558 [STEP 3] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.33753536 [STEP 4] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.342810571 [STEP 5] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.338084585 [STEP 6] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.331142445 [STEP 7] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.330676539 [STEP 8] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.331898797 [STEP 9] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.331231962 [STEP 10] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009564782 seconds Ending run at 22:29:23 UTC on 2022-06-02. Run time = 3.649930082 Run time without initialization = 3.427381681 Average number of zones advanced per microsecond: 0.765 Average number of zones advanced per microsecond per rank: 0.096 TinyProfiler total time across processes [min...avg...max]: 3.648 ... 3.65 ... 3.65 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.0689 2.3578 2.4693 67.65% Castro::do_advance_ctu() 10 0.03548 0.1472 0.4387 12.02% Gravity::make_radial_gravity() 21 0.3545 0.3751 0.3991 10.94% FabArray::ParallelCopy_finish() 41 0.04246 0.06312 0.1192 3.27% Castro::initData() 1 0.04543 0.08554 0.1134 3.11% Castro::estTimeStep() 21 0.02489 0.05279 0.09213 2.52% FabArray::setVal() 143 0.06394 0.06952 0.07256 1.99% Castro::reset_internal_energy(Fab) 1008 0.04804 0.0506 0.05441 1.49% FabArray::ParallelCopy_nowait() 41 0.02886 0.04321 0.04905 1.34% StateData::FillBoundary(geom) 41 0.03609 0.04321 0.04903 1.34% Amr::writePlotFile() 2 0.04262 0.04704 0.04871 1.33% Castro::normalize_species() 62 0.03938 0.04219 0.04468 1.22% FillPatchIterator::Initialize 41 0.02042 0.03273 0.03812 1.04% Gravity::interpolate_monopole_grav() 21 0.02612 0.02792 0.02946 0.81% Castro::construct_new_gravity_source() 10 0.02092 0.02362 0.02442 0.67% Castro::expand_state() 10 0.009593 0.01843 0.02301 0.63% Castro::computeTemp() 63 0.01778 0.01935 0.02085 0.57% Castro::initialize_do_advance() 10 0.009146 0.01713 0.01992 0.55% MultiFab::Saxpy() 20 0.01124 0.01499 0.01662 0.46% VisMF::Write(FabArray) 2 0.01032 0.01159 0.01517 0.42% FabArray::setDomainBndry() 41 0.005097 0.01164 0.01483 0.41% Gravity::get_new_grav_vector() 11 0.009366 0.01172 0.01311 0.36% MultiFab::contains_nan() 20 0.01052 0.01125 0.01226 0.34% Castro::construct_old_gravity_source() 10 0.005871 0.01039 0.01204 0.33% Gravity::get_old_grav_vector() 10 0.006306 0.009737 0.01169 0.32% Castro::initialize_advance() 10 0.01057 0.0108 0.01132 0.31% Castro::initMFs() 1 0.005483 0.006473 0.00884 0.24% Castro::enforce_min_density() 62 0.006026 0.006804 0.007164 0.20% Castro::construct_new_source() 50 0.004997 0.006555 0.007093 0.19% StateData::define() 4 0.004536 0.005181 0.006773 0.19% main() 1 0.003581 0.004853 0.005322 0.15% Castro::swap_state_time_levels() 10 0.003627 0.0041 0.00522 0.14% Amr::coarseTimeStep() 10 0.0008777 0.001606 0.0033 0.09% Castro::buildMetrics() 1 0.001307 0.001486 0.001931 0.05% Castro::finalize_do_advance() 10 0.0005801 0.001094 0.00128 0.04% Amr::InitAmr() 1 0.0002746 0.0003432 0.0005938 0.02% Amr::timeStep() 10 0.0001813 0.0002497 0.0004862 0.01% DistributionMapping::LeastUsedCPUs() 1 8.754e-06 0.0003112 0.0003905 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002817 0.0003004 0.0003324 0.01% Castro::clean_state() 62 0.0001561 0.0001645 0.000177 0.00% StateDataPhysBCFunct::() 41 0.0001265 0.0001392 0.0001498 0.00% Castro::enforce_consistent_e() 1 7.871e-05 0.0001009 0.0001439 0.00% FabArray::ParallelCopy() 41 8.814e-05 9.182e-05 0.0001008 0.00% Castro::construct_old_source() 50 4.247e-05 7.456e-05 9.781e-05 0.00% Castro::do_old_sources() 10 4.457e-05 6.58e-05 8.063e-05 0.00% Castro::do_new_sources() 10 4.493e-05 6.74e-05 7.92e-05 0.00% Castro::construct_old_gravity() 10 3.962e-05 5.557e-05 7.639e-05 0.00% FillPatchSingleLevel 41 6.288e-05 6.995e-05 7.636e-05 0.00% Castro::Castro() 1 4.88e-05 6.063e-05 7.575e-05 0.00% Amr::FinalizeInit() 1 3.569e-06 1.336e-05 7.458e-05 0.00% Amr::writeSmallPlotFile() 1 2.525e-05 5.982e-05 7.027e-05 0.00% Castro::subcycle_advance_ctu() 10 4.063e-05 5.393e-05 6.435e-05 0.00% Castro::apply_source_to_state() 20 4.225e-05 4.893e-05 6.044e-05 0.00% FabArrayBase::getCPC() 41 4.804e-05 5.276e-05 6.027e-05 0.00% Castro::construct_new_gravity() 10 4.106e-05 4.822e-05 5.879e-05 0.00% Castro::finalize_advance() 10 4.776e-05 5.124e-05 5.425e-05 0.00% Castro::advance() 10 3.345e-05 4.091e-05 4.814e-05 0.00% FabArrayBase::CPC::define() 2 2.161e-05 2.943e-05 3.556e-05 0.00% Amr::defBaseLevel() 1 2.449e-05 2.864e-05 3.311e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.337e-05 1.879e-05 3.187e-05 0.00% Castro::enforce_speed_limit() 62 2.406e-05 2.833e-05 3.073e-05 0.00% Castro::check_for_nan() 20 2.153e-05 2.375e-05 2.622e-05 0.00% Castro::post_timestep() 10 1.103e-05 1.797e-05 2.483e-05 0.00% Gravity::swapTimeLevels() 10 6.419e-06 1.365e-05 2.266e-05 0.00% Amr::initSubcycle() 1 7.761e-06 1.001e-05 1.653e-05 0.00% Castro::create_source_corrector() 10 7.655e-06 1.122e-05 1.401e-05 0.00% Castro::post_init() 1 7.952e-06 1.116e-05 1.348e-05 0.00% Gravity::set_mass_offset() 10 8.347e-06 1.052e-05 1.237e-05 0.00% Castro::FluxRegCrseInit 10 6.502e-06 9.418e-06 1.086e-05 0.00% Castro::computeNewDt() 9 7.11e-06 9.227e-06 1.044e-05 0.00% Amr::InitializeInit() 1 2.071e-06 3.319e-06 9.122e-06 0.00% Castro::retry_advance_ctu() 10 3.971e-06 6.017e-06 7.53e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.612e-06 4.403e-06 5.538e-06 0.00% Castro::computeInitialDt() 2 3.903e-06 4.43e-06 5.526e-06 0.00% Amr::init() 1 1.84e-06 3.036e-06 5.521e-06 0.00% Castro::post_regrid() 1 1.742e-06 3.072e-06 4.89e-06 0.00% Castro::FluxRegFineAdd() 10 1.818e-06 2.308e-06 3.101e-06 0.00% Amr::initialInit() 1 1.301e-06 1.615e-06 2.675e-06 0.00% DistributionMapping::Distribute() 1 9.44e-07 1.224e-06 1.814e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.648 3.65 3.65 100.00% Amr::coarseTimeStep() 10 3.413 3.413 3.413 93.50% Amr::timeStep() 10 3.401 3.402 3.403 93.23% Castro::advance() 10 3.385 3.386 3.386 92.77% Castro::subcycle_advance_ctu() 10 3.31 3.314 3.322 91.02% Castro::do_advance_ctu() 10 3.31 3.314 3.322 91.02% Castro::construct_ctu_hydro_source() 10 2.069 2.358 2.469 67.65% Gravity::make_radial_gravity() 21 0.3545 0.3751 0.3991 10.94% Castro::construct_old_gravity() 10 0.2097 0.2263 0.2452 6.72% Gravity::get_old_grav_vector() 10 0.2089 0.2255 0.2445 6.70% Gravity::get_new_grav_vector() 11 0.2388 0.2412 0.2428 6.65% Amr::init() 1 0.2218 0.2221 0.2222 6.09% FillPatchIterator::Initialize 41 0.1869 0.1943 0.2109 5.78% Castro::construct_new_gravity() 10 0.2012 0.2034 0.2044 5.60% FillPatchSingleLevel 41 0.1365 0.1499 0.1854 5.08% Castro::initialize_do_advance() 10 0.1624 0.1742 0.185 5.07% Amr::initialInit() 1 0.1723 0.1731 0.1736 4.76% FabArray::ParallelCopy() 41 0.09046 0.1065 0.1483 4.06% Castro::expand_state() 10 0.1212 0.1262 0.1323 3.62% Amr::InitializeInit() 1 0.06487 0.1056 0.1318 3.61% Amr::defBaseLevel() 1 0.06487 0.1056 0.1318 3.61% Castro::clean_state() 62 0.1111 0.1183 0.1258 3.45% FabArray::ParallelCopy_finish() 41 0.04246 0.06312 0.1192 3.27% Castro::initData() 1 0.04932 0.0899 0.1176 3.22% Amr::FinalizeInit() 1 0.04132 0.06751 0.1084 2.97% Castro::estTimeStep() 21 0.02489 0.05279 0.09213 2.52% Castro::initialize_advance() 10 0.06374 0.07145 0.0763 2.09% Castro::computeTemp() 63 0.06632 0.07025 0.07559 2.07% FabArray::setVal() 143 0.06394 0.06952 0.07256 1.99% Castro::computeInitialDt() 2 0.002172 0.02831 0.06908 1.89% Castro::do_new_sources() 10 0.06078 0.06476 0.0661 1.81% Amr::writePlotFile() 2 0.05779 0.05864 0.05947 1.63% Castro::reset_internal_energy(MultiFab) 63 0.04834 0.0509 0.05473 1.50% Castro::reset_internal_energy(Fab) 1008 0.04804 0.0506 0.05441 1.49% Castro::do_old_sources() 10 0.03731 0.04668 0.05141 1.41% StateDataPhysBCFunct::() 41 0.03623 0.04335 0.04917 1.35% FabArray::ParallelCopy_nowait() 41 0.02895 0.04329 0.04914 1.35% StateData::FillBoundary(geom) 41 0.03609 0.04321 0.04903 1.34% Castro::normalize_species() 62 0.03938 0.04219 0.04468 1.22% Castro::post_init() 1 0.0382 0.03862 0.03911 1.07% Castro::construct_new_source() 50 0.02592 0.03018 0.03149 0.86% Gravity::interpolate_monopole_grav() 21 0.02612 0.02792 0.02946 0.81% Castro::construct_new_gravity_source() 10 0.02092 0.02362 0.02442 0.67% Castro::post_timestep() 10 0.01489 0.01611 0.01674 0.46% Castro::apply_source_to_state() 20 0.01128 0.01504 0.01667 0.46% MultiFab::Saxpy() 20 0.01124 0.01499 0.01662 0.46% VisMF::Write(FabArray) 2 0.01032 0.01159 0.01517 0.42% FabArray::setDomainBndry() 41 0.005097 0.01164 0.01483 0.41% Castro::Castro() 1 0.009109 0.01012 0.0126 0.35% Castro::check_for_nan() 20 0.01054 0.01128 0.01228 0.34% MultiFab::contains_nan() 20 0.01052 0.01125 0.01226 0.34% Castro::construct_old_source() 50 0.005914 0.01047 0.01213 0.33% Castro::construct_old_gravity_source() 10 0.005871 0.01039 0.01204 0.33% Castro::initMFs() 1 0.005483 0.006473 0.00884 0.24% Castro::computeNewDt() 9 0.007359 0.007364 0.007369 0.20% Castro::enforce_min_density() 62 0.006026 0.006804 0.007164 0.20% AmrLevel::AmrLevel(dm) 1 0.00455 0.0052 0.006791 0.19% StateData::define() 4 0.004536 0.005181 0.006773 0.19% Castro::swap_state_time_levels() 10 0.003627 0.0041 0.00522 0.14% Castro::post_regrid() 1 0.001543 0.001944 0.002949 0.08% Castro::buildMetrics() 1 0.001418 0.001629 0.002147 0.06% Castro::finalize_do_advance() 10 0.0005801 0.001094 0.00128 0.04% Amr::InitAmr() 1 0.0002829 0.0003532 0.0006075 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.441e-05 0.0003168 0.0003974 0.01% DistributionMapping::LeastUsedCPUs() 1 8.754e-06 0.0003112 0.0003905 0.01% Castro::enforce_consistent_e() 1 7.871e-05 0.0001009 0.0001439 0.00% FabArrayBase::getCPC() 41 7.167e-05 8.219e-05 8.993e-05 0.00% Amr::writeSmallPlotFile() 1 2.525e-05 5.982e-05 7.027e-05 0.00% Castro::finalize_advance() 10 5.625e-05 6.296e-05 6.784e-05 0.00% FabArrayBase::CPC::define() 2 2.161e-05 2.943e-05 3.556e-05 0.00% Castro::enforce_speed_limit() 62 2.406e-05 2.833e-05 3.073e-05 0.00% Gravity::swapTimeLevels() 10 6.419e-06 1.365e-05 2.266e-05 0.00% Amr::initSubcycle() 1 7.761e-06 1.001e-05 1.653e-05 0.00% Castro::create_source_corrector() 10 7.655e-06 1.122e-05 1.401e-05 0.00% Gravity::set_mass_offset() 10 8.347e-06 1.052e-05 1.237e-05 0.00% Castro::FluxRegCrseInit 10 6.502e-06 9.418e-06 1.086e-05 0.00% Castro::retry_advance_ctu() 10 3.971e-06 6.017e-06 7.53e-06 0.00% Castro::FluxRegFineAdd() 10 1.818e-06 2.308e-06 3.101e-06 0.00% DistributionMapping::Distribute() 1 9.44e-07 1.224e-06 1.814e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.06-5-gc96e79e8409b) finalized