MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.06-8-g8a1c76c0af89) initialized Starting run at 12:46:58 UTC on 2022-06-07. Successfully read inputs file ... Castro git describe: 22.06-5-gdba09db28 AMReX git describe: 22.06-8-g8a1c76c0a Microphysics git describe: 22.06-1-gb8e427c1 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014080624 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.348080691 [STEP 1] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.335071641 [STEP 2] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.334473878 [STEP 3] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.333570746 [STEP 4] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.345062073 [STEP 5] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.340772198 [STEP 6] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.331722058 [STEP 7] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.330517853 [STEP 8] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.330587388 [STEP 9] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.331081946 [STEP 10] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009811792 seconds Ending run at 12:47:02 UTC on 2022-06-07. Run time = 3.57992985 Run time without initialization = 3.377233301 Average number of zones advanced per microsecond: 0.776 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.578 ... 3.579 ... 3.58 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.0609 2.3322 2.4428 68.23% Castro::do_advance_ctu() 10 0.02729 0.1386 0.4128 11.53% Gravity::make_radial_gravity() 21 0.3427 0.3543 0.3823 10.68% Castro::initData() 1 0.04575 0.08338 0.1344 3.75% Castro::estTimeStep() 21 0.02733 0.08523 0.1217 3.40% FabArray::ParallelCopy_finish() 41 0.0413 0.05972 0.1208 3.37% FabArray::setVal() 143 0.05814 0.06844 0.0717 2.00% Castro::reset_internal_energy(Fab) 1008 0.04591 0.04959 0.05237 1.46% FabArray::ParallelCopy_nowait() 41 0.02554 0.04302 0.04858 1.36% StateData::FillBoundary(geom) 41 0.03702 0.04296 0.04789 1.34% Castro::normalize_species() 62 0.04028 0.04173 0.04263 1.19% FillPatchIterator::Initialize 41 0.02035 0.0323 0.03675 1.03% Gravity::interpolate_monopole_grav() 21 0.02681 0.02776 0.02825 0.79% Castro::construct_new_gravity_source() 10 0.02042 0.02347 0.02481 0.69% Castro::expand_state() 10 0.009712 0.01929 0.02318 0.65% Castro::computeTemp() 63 0.01732 0.01859 0.01971 0.55% Castro::initialize_do_advance() 10 0.009034 0.01645 0.0185 0.52% MultiFab::Saxpy() 20 0.008609 0.01427 0.01606 0.45% FabArray::setDomainBndry() 41 0.006052 0.01219 0.01512 0.42% VisMF::Write(FabArray) 2 0.01153 0.01219 0.01486 0.42% Gravity::get_new_grav_vector() 11 0.007256 0.01121 0.01333 0.37% Amr::writePlotFile() 2 0.009251 0.01195 0.01258 0.35% Castro::construct_old_gravity_source() 10 0.004962 0.01002 0.01172 0.33% MultiFab::contains_nan() 20 0.009456 0.01077 0.01171 0.33% Gravity::get_old_grav_vector() 10 0.005571 0.009536 0.01136 0.32% Castro::initialize_advance() 10 0.006319 0.009779 0.01039 0.29% Castro::initMFs() 1 0.005499 0.006492 0.008827 0.25% Castro::construct_new_source() 50 0.004749 0.006519 0.007991 0.22% Castro::enforce_min_density() 62 0.005892 0.006661 0.0073 0.20% StateData::define() 4 0.004594 0.00527 0.006809 0.19% main() 1 0.003349 0.005015 0.00578 0.16% Castro::swap_state_time_levels() 10 0.002857 0.003674 0.003926 0.11% Amr::coarseTimeStep() 10 0.0008821 0.001647 0.003392 0.09% Castro::buildMetrics() 1 0.001301 0.001493 0.001956 0.05% Castro::finalize_do_advance() 10 0.0005347 0.001094 0.001285 0.04% Amr::timeStep() 10 0.0001653 0.0002306 0.0005171 0.01% Amr::InitAmr() 1 0.0002672 0.0003365 0.0004567 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002701 0.000288 0.0003017 0.01% DistributionMapping::LeastUsedCPUs() 1 8.318e-06 0.0001364 0.0002063 0.01% Castro::clean_state() 62 0.0001208 0.000154 0.0001859 0.01% StateDataPhysBCFunct::() 41 9.848e-05 0.0001389 0.0001833 0.01% Castro::enforce_consistent_e() 1 7.91e-05 9.579e-05 0.0001476 0.00% Castro::do_new_sources() 10 3.689e-05 6.946e-05 0.0001127 0.00% FabArray::ParallelCopy() 41 6.731e-05 9.194e-05 0.0001087 0.00% Castro::construct_old_source() 50 3.499e-05 6.889e-05 8.56e-05 0.00% Castro::do_old_sources() 10 3.841e-05 6.453e-05 8.159e-05 0.00% Amr::FinalizeInit() 1 3.636e-06 1.416e-05 8.009e-05 0.00% FillPatchSingleLevel 41 5.449e-05 7.06e-05 7.952e-05 0.00% Castro::Castro() 1 5.211e-05 6.122e-05 6.839e-05 0.00% Amr::writeSmallPlotFile() 1 3.111e-05 5.432e-05 6.811e-05 0.00% Castro::subcycle_advance_ctu() 10 2.841e-05 4.826e-05 6.66e-05 0.00% Castro::construct_old_gravity() 10 3.688e-05 5.318e-05 6.435e-05 0.00% Castro::finalize_advance() 10 4.342e-05 5.089e-05 5.656e-05 0.00% FabArrayBase::getCPC() 41 3.954e-05 4.982e-05 5.467e-05 0.00% Castro::construct_new_gravity() 10 3.507e-05 4.616e-05 5.337e-05 0.00% Castro::advance() 10 2.778e-05 4.046e-05 5e-05 0.00% Castro::apply_source_to_state() 20 2.833e-05 4.139e-05 4.738e-05 0.00% Amr::defBaseLevel() 1 2.853e-05 3.846e-05 4.696e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.564e-05 2.229e-05 3.257e-05 0.00% FabArrayBase::CPC::define() 2 2.129e-05 2.542e-05 2.965e-05 0.00% Castro::enforce_speed_limit() 62 2.176e-05 2.607e-05 2.912e-05 0.00% Castro::computeNewDt() 9 7.944e-06 1.326e-05 2.594e-05 0.00% Castro::check_for_nan() 20 1.884e-05 2.242e-05 2.482e-05 0.00% Castro::post_timestep() 10 1.007e-05 1.828e-05 2.317e-05 0.00% Gravity::set_mass_offset() 10 6.87e-06 1.145e-05 1.967e-05 0.00% Castro::FluxRegCrseInit 10 6.045e-06 1.202e-05 1.832e-05 0.00% Gravity::swapTimeLevels() 10 6.813e-06 1.132e-05 1.495e-05 0.00% Amr::initSubcycle() 1 7.847e-06 9.882e-06 1.447e-05 0.00% Castro::post_init() 1 8.215e-06 1.036e-05 1.352e-05 0.00% Castro::create_source_corrector() 10 7.108e-06 1.01e-05 1.163e-05 0.00% Castro::retry_advance_ctu() 10 4.145e-06 6.454e-06 8.354e-06 0.00% Amr::initialInit() 1 1.134e-06 2.331e-06 8.286e-06 0.00% Amr::InitializeInit() 1 1.881e-06 3.641e-06 7.176e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.535e-06 4.536e-06 6.418e-06 0.00% Castro::computeInitialDt() 2 3.705e-06 4.671e-06 5.341e-06 0.00% Castro::post_regrid() 1 1.786e-06 3.082e-06 4.754e-06 0.00% Amr::init() 1 2.134e-06 2.489e-06 2.997e-06 0.00% Castro::FluxRegFineAdd() 10 1.803e-06 2.288e-06 2.621e-06 0.00% DistributionMapping::Distribute() 1 1.085e-06 1.283e-06 1.596e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.578 3.579 3.58 100.00% Amr::coarseTimeStep() 10 3.362 3.362 3.362 93.90% Amr::timeStep() 10 3.35 3.352 3.352 93.65% Castro::advance() 10 3.335 3.335 3.336 93.17% Castro::subcycle_advance_ctu() 10 3.262 3.265 3.273 91.43% Castro::do_advance_ctu() 10 3.262 3.265 3.273 91.43% Castro::construct_ctu_hydro_source() 10 2.061 2.332 2.443 68.23% Gravity::make_radial_gravity() 21 0.3427 0.3543 0.3823 10.68% Gravity::get_new_grav_vector() 11 0.2311 0.2327 0.2341 6.54% Castro::construct_old_gravity() 10 0.2027 0.2122 0.2331 6.51% Gravity::get_old_grav_vector() 10 0.2019 0.2113 0.2326 6.50% FillPatchIterator::Initialize 41 0.1816 0.1906 0.2101 5.87% Castro::construct_new_gravity() 10 0.2042 0.2056 0.2066 5.77% Amr::init() 1 0.2021 0.2022 0.2023 5.65% Amr::initialInit() 1 0.1877 0.188 0.1882 5.26% FillPatchSingleLevel 41 0.1306 0.1461 0.1837 5.13% Castro::initialize_do_advance() 10 0.1606 0.1724 0.1785 4.99% Amr::InitializeInit() 1 0.06451 0.103 0.1576 4.40% Amr::defBaseLevel() 1 0.0645 0.103 0.1576 4.40% FabArray::ParallelCopy() 41 0.08794 0.1029 0.1465 4.09% Castro::initData() 1 0.0492 0.08743 0.1381 3.86% Castro::expand_state() 10 0.1176 0.1259 0.1302 3.64% Amr::FinalizeInit() 1 0.03012 0.08495 0.1234 3.45% Castro::estTimeStep() 21 0.02733 0.08523 0.1217 3.40% FabArray::ParallelCopy_finish() 41 0.0413 0.05972 0.1208 3.37% Castro::clean_state() 62 0.1089 0.116 0.1199 3.35% Castro::computeInitialDt() 2 0.001722 0.05641 0.09485 2.65% Castro::initialize_advance() 10 0.0615 0.07027 0.07282 2.03% Castro::computeTemp() 63 0.06351 0.06847 0.07237 2.02% FabArray::setVal() 143 0.05814 0.06844 0.0717 2.00% Castro::do_new_sources() 10 0.05289 0.0634 0.06542 1.83% Castro::reset_internal_energy(MultiFab) 63 0.04619 0.04988 0.05266 1.47% Castro::reset_internal_energy(Fab) 1008 0.04591 0.04959 0.05237 1.46% Castro::do_old_sources() 10 0.03219 0.04495 0.04865 1.36% FabArray::ParallelCopy_nowait() 41 0.02563 0.0431 0.04865 1.36% StateDataPhysBCFunct::() 41 0.03713 0.04309 0.04807 1.34% StateData::FillBoundary(geom) 41 0.03702 0.04296 0.04789 1.34% Castro::normalize_species() 62 0.04028 0.04173 0.04263 1.19% Castro::construct_new_source() 50 0.02517 0.02998 0.03151 0.88% Gravity::interpolate_monopole_grav() 21 0.02681 0.02776 0.02825 0.79% Castro::post_init() 1 0.02776 0.02789 0.02808 0.78% Castro::construct_new_gravity_source() 10 0.02042 0.02347 0.02481 0.69% Amr::writePlotFile() 2 0.02404 0.02415 0.02431 0.68% Castro::post_timestep() 10 0.0149 0.01607 0.01671 0.47% Castro::apply_source_to_state() 20 0.008645 0.01431 0.01611 0.45% MultiFab::Saxpy() 20 0.008609 0.01427 0.01606 0.45% FabArray::setDomainBndry() 41 0.006052 0.01219 0.01512 0.42% VisMF::Write(FabArray) 2 0.01153 0.01219 0.01486 0.42% Castro::Castro() 1 0.009104 0.01012 0.01262 0.35% Castro::construct_old_source() 50 0.004997 0.01009 0.01179 0.33% Castro::check_for_nan() 20 0.009475 0.01079 0.01173 0.33% Castro::construct_old_gravity_source() 10 0.004962 0.01002 0.01172 0.33% MultiFab::contains_nan() 20 0.009456 0.01077 0.01171 0.33% Castro::initMFs() 1 0.005499 0.006492 0.008827 0.25% Castro::computeNewDt() 9 0.007311 0.007316 0.00732 0.20% Castro::enforce_min_density() 62 0.005892 0.006661 0.0073 0.20% AmrLevel::AmrLevel(dm) 1 0.004615 0.005293 0.006832 0.19% StateData::define() 4 0.004594 0.00527 0.006809 0.19% Castro::swap_state_time_levels() 10 0.002857 0.003674 0.003926 0.11% Castro::buildMetrics() 1 0.001414 0.001642 0.002182 0.06% Castro::post_regrid() 1 0.001516 0.001582 0.001629 0.05% Castro::finalize_do_advance() 10 0.0005347 0.001094 0.001285 0.04% Amr::InitAmr() 1 0.0002761 0.0003464 0.0004712 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.372e-05 0.0001423 0.0002143 0.01% DistributionMapping::LeastUsedCPUs() 1 8.318e-06 0.0001364 0.0002063 0.01% Castro::enforce_consistent_e() 1 7.91e-05 9.579e-05 0.0001476 0.00% FabArrayBase::getCPC() 41 6.197e-05 7.524e-05 8.181e-05 0.00% Castro::finalize_advance() 10 5.126e-05 6.52e-05 7.327e-05 0.00% Amr::writeSmallPlotFile() 1 3.111e-05 5.432e-05 6.811e-05 0.00% FabArrayBase::CPC::define() 2 2.129e-05 2.542e-05 2.965e-05 0.00% Castro::enforce_speed_limit() 62 2.176e-05 2.607e-05 2.912e-05 0.00% Gravity::set_mass_offset() 10 6.87e-06 1.145e-05 1.967e-05 0.00% Castro::FluxRegCrseInit 10 6.045e-06 1.202e-05 1.832e-05 0.00% Gravity::swapTimeLevels() 10 6.813e-06 1.132e-05 1.495e-05 0.00% Amr::initSubcycle() 1 7.847e-06 9.882e-06 1.447e-05 0.00% Castro::create_source_corrector() 10 7.108e-06 1.01e-05 1.163e-05 0.00% Castro::retry_advance_ctu() 10 4.145e-06 6.454e-06 8.354e-06 0.00% Castro::FluxRegFineAdd() 10 1.803e-06 2.288e-06 2.621e-06 0.00% DistributionMapping::Distribute() 1 1.085e-06 1.283e-06 1.596e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.06-8-g8a1c76c0af89) finalized