MPI initialized with 8 MPI processes
MPI initialized with thread support level 3
AMReX (22.06-8-g8a1c76c0af89) initialized
Starting run at 16:25:38 UTC on 2022-06-07.
Successfully read inputs file ...
Castro git describe: 22.06-5-gbb91df8fe
AMReX git describe: 22.06-8-g8a1c76c0a
Microphysics git describe: 22.06-1-gb8e427c1
reading extern runtime parameters ...
3 Species:
C12 O16 Mg24
Successfully read inputs file ...
INITIAL GRIDS
Level 0 8 grids 262144 cells 100 % of domain
smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32
PLOTFILE: file = dustcollapse-3d-monopole_plt00000
Write plotfile time = 0.013783093 seconds
[Level 0 step 1] ADVANCE with dt = 4.541742215e-05
[Level 0 step 1] Advanced 262144 cells
[STEP 1] Coarse TimeStep time: 0.357956355
[STEP 1] FAB kilobyte spread across MPI nodes: [58394 ... 58394]
STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05
[Level 0 step 2] ADVANCE with dt = 4.768829326e-05
[Level 0 step 2] Advanced 262144 cells
[STEP 2] Coarse TimeStep time: 0.336110798
[STEP 2] FAB kilobyte spread across MPI nodes: [58394 ... 58394]
STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05
[Level 0 step 3] ADVANCE with dt = 5.007270792e-05
[Level 0 step 3] Advanced 262144 cells
[STEP 3] Coarse TimeStep time: 0.333597971
[STEP 3] FAB kilobyte spread across MPI nodes: [58394 ... 58394]
STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05
[Level 0 step 4] ADVANCE with dt = 5.257634331e-05
[Level 0 step 4] Advanced 262144 cells
[STEP 4] Coarse TimeStep time: 0.333444384
[STEP 4] FAB kilobyte spread across MPI nodes: [58394 ... 58394]
STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05
[Level 0 step 5] ADVANCE with dt = 5.520516048e-05
[Level 0 step 5] Advanced 262144 cells
[STEP 5] Coarse TimeStep time: 0.345110485
[STEP 5] FAB kilobyte spread across MPI nodes: [58394 ... 58394]
STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05
[Level 0 step 6] ADVANCE with dt = 5.79654185e-05
[Level 0 step 6] Advanced 262144 cells
[STEP 6] Coarse TimeStep time: 0.339880052
[STEP 6] FAB kilobyte spread across MPI nodes: [58394 ... 58394]
STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05
[Level 0 step 7] ADVANCE with dt = 6.086368943e-05
[Level 0 step 7] Advanced 262144 cells
[STEP 7] Coarse TimeStep time: 0.331550005
[STEP 7] FAB kilobyte spread across MPI nodes: [58394 ... 58394]
STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05
[Level 0 step 8] ADVANCE with dt = 6.39068739e-05
[Level 0 step 8] Advanced 262144 cells
[STEP 8] Coarse TimeStep time: 0.329870854
[STEP 8] FAB kilobyte spread across MPI nodes: [58394 ... 58394]
STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05
[Level 0 step 9] ADVANCE with dt = 6.71022176e-05
[Level 0 step 9] Advanced 262144 cells
[STEP 9] Coarse TimeStep time: 0.330616672
[STEP 9] FAB kilobyte spread across MPI nodes: [58394 ... 58394]
STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05
[Level 0 step 10] ADVANCE with dt = 7.045732848e-05
[Level 0 step 10] Advanced 262144 cells
[STEP 10] Coarse TimeStep time: 0.331118451
[STEP 10] FAB kilobyte spread across MPI nodes: [58394 ... 58394]
STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05
PLOTFILE: file = dustcollapse-3d-monopole_plt00010
Write plotfile time = 0.009618875 seconds
Ending run at 16:25:42 UTC on 2022-06-07.
Run time = 3.589240766
Run time without initialization = 3.384984586
Average number of zones advanced per microsecond: 0.774
Average number of zones advanced per microsecond per rank: 0.097
TinyProfiler total time across processes [min...avg...max]: 3.588 ... 3.589 ... 3.589
-------------------------------------------------------------------------------------------
Name NCalls Excl. Min Excl. Avg Excl. Max Max %
-------------------------------------------------------------------------------------------
Castro::construct_ctu_hydro_source() 10 2.0956 2.3342 2.4352 67.85%
Gravity::make_radial_gravity() 21 0.3513 0.3622 0.3875 10.80%
Castro::do_advance_ctu() 10 0.03981 0.1432 0.3838 10.69%
Castro::initData() 1 0.03764 0.09145 0.1344 3.74%
Castro::estTimeStep() 21 0.02888 0.07235 0.1266 3.53%
FabArray::ParallelCopy_finish() 41 0.04096 0.06055 0.1202 3.35%
FabArray::setVal() 143 0.05826 0.06839 0.07142 1.99%
Castro::reset_internal_energy(Fab) 1008 0.04834 0.0501 0.05223 1.46%
FabArray::ParallelCopy_nowait() 41 0.02588 0.04316 0.0493 1.37%
StateData::FillBoundary(geom) 41 0.03694 0.04195 0.04655 1.30%
Castro::normalize_species() 62 0.04128 0.04229 0.0429 1.20%
FillPatchIterator::Initialize 41 0.02042 0.03207 0.03645 1.02%
Gravity::interpolate_monopole_grav() 21 0.02687 0.02799 0.02895 0.81%
Castro::construct_new_gravity_source() 10 0.02035 0.02348 0.02491 0.69%
Castro::expand_state() 10 0.009751 0.01859 0.02251 0.63%
Castro::computeTemp() 63 0.01806 0.01904 0.01975 0.55%
Castro::initialize_do_advance() 10 0.009 0.01644 0.01831 0.51%
MultiFab::Saxpy() 20 0.008655 0.01454 0.01631 0.45%
FabArray::setDomainBndry() 41 0.00611 0.01194 0.01499 0.42%
VisMF::Write(FabArray) 2 0.01107 0.01192 0.01444 0.40%
Amr::writePlotFile() 2 0.009167 0.01172 0.01269 0.35%
Gravity::get_new_grav_vector() 11 0.007727 0.01119 0.01246 0.35%
MultiFab::contains_nan() 20 0.009366 0.01103 0.01192 0.33%
Castro::construct_old_gravity_source() 10 0.004977 0.01011 0.01178 0.33%
Gravity::get_old_grav_vector() 10 0.005723 0.00924 0.01083 0.30%
Castro::initialize_advance() 10 0.006251 0.009846 0.01043 0.29%
Castro::initMFs() 1 0.005452 0.006456 0.008287 0.23%
Castro::construct_new_source() 50 0.004904 0.006531 0.007141 0.20%
StateData::define() 4 0.004524 0.00529 0.006744 0.19%
Castro::enforce_min_density() 62 0.005417 0.006115 0.006603 0.18%
main() 1 0.003717 0.005012 0.005472 0.15%
Castro::swap_state_time_levels() 10 0.00282 0.003663 0.0042 0.12%
Amr::coarseTimeStep() 10 0.0008384 0.001584 0.003151 0.09%
Castro::buildMetrics() 1 0.001302 0.001506 0.001875 0.05%
Castro::finalize_do_advance() 10 0.000534 0.001077 0.001261 0.04%
Amr::InitAmr() 1 0.0002769 0.000359 0.0005281 0.01%
Amr::timeStep() 10 0.0001675 0.0002206 0.0004533 0.01%
Castro::reset_internal_energy(MultiFab) 63 0.0002867 0.000303 0.0003201 0.01%
DistributionMapping::LeastUsedCPUs() 1 9.597e-06 0.0002141 0.00031 0.01%
Castro::clean_state() 62 0.000132 0.0001626 0.0001738 0.00%
Castro::enforce_consistent_e() 1 7.769e-05 0.0001032 0.0001583 0.00%
StateDataPhysBCFunct::() 41 0.0001205 0.0001405 0.0001539 0.00%
FabArray::ParallelCopy() 41 7.799e-05 8.736e-05 9.668e-05 0.00%
Castro::construct_old_source() 50 3.945e-05 7.74e-05 9.291e-05 0.00%
FillPatchSingleLevel 41 6.708e-05 7.463e-05 8.255e-05 0.00%
Castro::do_new_sources() 10 4.101e-05 6.626e-05 8.086e-05 0.00%
Castro::do_old_sources() 10 4.099e-05 6.6e-05 7.927e-05 0.00%
Castro::subcycle_advance_ctu() 10 3.359e-05 5.351e-05 7.63e-05 0.00%
Amr::writeSmallPlotFile() 1 2.434e-05 5.514e-05 7.189e-05 0.00%
Amr::FinalizeInit() 1 3.951e-06 1.341e-05 7.129e-05 0.00%
Castro::Castro() 1 4.891e-05 6.043e-05 6.785e-05 0.00%
FabArrayBase::getCPC() 41 5.835e-05 6.166e-05 6.752e-05 0.00%
Castro::construct_old_gravity() 10 3.834e-05 5.313e-05 6.209e-05 0.00%
Castro::finalize_advance() 10 4.898e-05 5.127e-05 5.42e-05 0.00%
Castro::apply_source_to_state() 20 3.938e-05 4.573e-05 5.248e-05 0.00%
Castro::construct_new_gravity() 10 3.392e-05 4.374e-05 5.035e-05 0.00%
Castro::advance() 10 3.217e-05 4.055e-05 4.59e-05 0.00%
Amr::defBaseLevel() 1 2.764e-05 3.091e-05 3.577e-05 0.00%
FabArrayBase::CPC::define() 2 2.359e-05 2.795e-05 3.561e-05 0.00%
Castro::enforce_speed_limit() 62 2.359e-05 2.764e-05 3.2e-05 0.00%
Castro::check_for_nan() 20 2.061e-05 2.508e-05 2.726e-05 0.00%
Castro::post_timestep() 10 1.06e-05 1.781e-05 2.274e-05 0.00%
AmrLevel::AmrLevel(dm) 1 1.47e-05 1.674e-05 2.242e-05 0.00%
Gravity::swapTimeLevels() 10 5.192e-06 1.179e-05 1.672e-05 0.00%
Amr::initSubcycle() 1 8.293e-06 1.083e-05 1.649e-05 0.00%
Castro::create_source_corrector() 10 6.281e-06 1.175e-05 1.544e-05 0.00%
Castro::post_init() 1 8.131e-06 1.046e-05 1.462e-05 0.00%
Gravity::set_mass_offset() 10 7.42e-06 1.081e-05 1.304e-05 0.00%
Amr::InitializeInit() 1 2.186e-06 3.878e-06 1.246e-05 0.00%
Castro::computeNewDt() 9 8.619e-06 9.836e-06 1.236e-05 0.00%
Castro::FluxRegCrseInit 10 5.896e-06 8.948e-06 1.179e-05 0.00%
DistributionMapping::SFCProcessorMapDoIt() 1 3.829e-06 5.593e-06 1.045e-05 0.00%
Amr::initialInit() 1 1.048e-06 2.147e-06 7.471e-06 0.00%
Castro::retry_advance_ctu() 10 3.733e-06 5.636e-06 7.392e-06 0.00%
Castro::computeInitialDt() 2 3.115e-06 3.97e-06 4.39e-06 0.00%
Castro::post_regrid() 1 2.1e-06 3.162e-06 4.191e-06 0.00%
Castro::FluxRegFineAdd() 10 1.967e-06 2.32e-06 2.688e-06 0.00%
Amr::init() 1 1.581e-06 2.047e-06 2.542e-06 0.00%
DistributionMapping::Distribute() 1 1.044e-06 1.318e-06 1.731e-06 0.00%
-------------------------------------------------------------------------------------------
-------------------------------------------------------------------------------------------
Name NCalls Incl. Min Incl. Avg Incl. Max Max %
-------------------------------------------------------------------------------------------
main() 1 3.588 3.589 3.589 100.00%
Amr::coarseTimeStep() 10 3.37 3.37 3.37 93.89%
Amr::timeStep() 10 3.359 3.36 3.361 93.64%
Castro::advance() 10 3.343 3.344 3.344 93.17%
Castro::subcycle_advance_ctu() 10 3.271 3.273 3.282 91.43%
Castro::do_advance_ctu() 10 3.271 3.273 3.282 91.43%
Castro::construct_ctu_hydro_source() 10 2.096 2.334 2.435 67.85%
Gravity::make_radial_gravity() 21 0.3513 0.3622 0.3875 10.80%
Gravity::get_new_grav_vector() 11 0.2344 0.2375 0.2394 6.67%
Castro::construct_old_gravity() 10 0.204 0.2139 0.2349 6.54%
Gravity::get_old_grav_vector() 10 0.2032 0.2131 0.2343 6.53%
FillPatchIterator::Initialize 41 0.1802 0.1901 0.2099 5.85%
Castro::construct_new_gravity() 10 0.2032 0.2048 0.206 5.74%
Amr::init() 1 0.2035 0.2037 0.2038 5.68%
Amr::initialInit() 1 0.1895 0.1898 0.1901 5.30%
FillPatchSingleLevel 41 0.1302 0.1461 0.1834 5.11%
Castro::initialize_do_advance() 10 0.1624 0.1729 0.18 5.01%
Amr::InitializeInit() 1 0.05521 0.1114 0.1537 4.28%
Amr::defBaseLevel() 1 0.05521 0.1114 0.1537 4.28%
FabArray::ParallelCopy() 41 0.08821 0.1039 0.1462 4.07%
Castro::initData() 1 0.04156 0.0959 0.1385 3.86%
Amr::FinalizeInit() 1 0.0364 0.07836 0.1348 3.76%
Castro::expand_state() 10 0.1184 0.126 0.1305 3.64%
Castro::estTimeStep() 21 0.02888 0.07235 0.1266 3.53%
FabArray::ParallelCopy_finish() 41 0.04096 0.06055 0.1202 3.35%
Castro::clean_state() 62 0.1133 0.1169 0.1198 3.34%
Castro::computeInitialDt() 2 0.001745 0.04393 0.1002 2.79%
Castro::initialize_advance() 10 0.06144 0.07024 0.073 2.03%
Castro::computeTemp() 63 0.06672 0.06944 0.07227 2.01%
FabArray::setVal() 143 0.05826 0.06839 0.07142 1.99%
Castro::do_new_sources() 10 0.05325 0.06367 0.06634 1.85%
Castro::reset_internal_energy(MultiFab) 63 0.04865 0.0504 0.05251 1.46%
Castro::reset_internal_energy(Fab) 1008 0.04834 0.0501 0.05223 1.46%
FabArray::ParallelCopy_nowait() 41 0.02597 0.04325 0.04939 1.38%
Castro::do_old_sources() 10 0.03318 0.04528 0.04932 1.37%
StateDataPhysBCFunct::() 41 0.03707 0.04209 0.0467 1.30%
StateData::FillBoundary(geom) 41 0.03694 0.04195 0.04655 1.30%
Castro::normalize_species() 62 0.04128 0.04229 0.0429 1.20%
Castro::post_init() 1 0.03235 0.03341 0.03392 0.94%
Castro::construct_new_source() 50 0.02525 0.03001 0.03157 0.88%
Gravity::interpolate_monopole_grav() 21 0.02687 0.02799 0.02895 0.81%
Castro::construct_new_gravity_source() 10 0.02035 0.02348 0.02491 0.69%
Amr::writePlotFile() 2 0.02343 0.02365 0.02391 0.67%
Castro::post_timestep() 10 0.01505 0.01604 0.01671 0.47%
Castro::apply_source_to_state() 20 0.008695 0.01459 0.01636 0.46%
MultiFab::Saxpy() 20 0.008655 0.01454 0.01631 0.45%
FabArray::setDomainBndry() 41 0.00611 0.01194 0.01499 0.42%
VisMF::Write(FabArray) 2 0.01107 0.01192 0.01444 0.40%
Castro::Castro() 1 0.008707 0.009962 0.01198 0.33%
Castro::check_for_nan() 20 0.009392 0.01105 0.01194 0.33%
MultiFab::contains_nan() 20 0.009366 0.01103 0.01192 0.33%
Castro::construct_old_source() 50 0.005016 0.01018 0.01187 0.33%
Castro::construct_old_gravity_source() 10 0.004977 0.01011 0.01178 0.33%
Castro::initMFs() 1 0.005452 0.006456 0.008287 0.23%
Castro::computeNewDt() 9 0.007312 0.007326 0.007334 0.20%
AmrLevel::AmrLevel(dm) 1 0.00454 0.005307 0.006766 0.19%
StateData::define() 4 0.004524 0.00529 0.006744 0.19%
Castro::enforce_min_density() 62 0.005417 0.006115 0.006603 0.18%
Castro::swap_state_time_levels() 10 0.00282 0.003663 0.0042 0.12%
Castro::post_regrid() 1 0.001568 0.001945 0.002902 0.08%
Castro::buildMetrics() 1 0.00142 0.001656 0.0021 0.06%
Castro::finalize_do_advance() 10 0.000534 0.001077 0.001261 0.04%
Amr::InitAmr() 1 0.0002861 0.0003698 0.0005446 0.02%
DistributionMapping::SFCProcessorMapDoIt() 1 1.639e-05 0.0002211 0.0003166 0.01%
DistributionMapping::LeastUsedCPUs() 1 9.597e-06 0.0002141 0.00031 0.01%
Castro::enforce_consistent_e() 1 7.769e-05 0.0001032 0.0001583 0.00%
FabArrayBase::getCPC() 41 8.359e-05 8.962e-05 0.0001003 0.00%
Amr::writeSmallPlotFile() 1 2.434e-05 5.514e-05 7.189e-05 0.00%
Castro::finalize_advance() 10 5.917e-05 6.253e-05 6.79e-05 0.00%
FabArrayBase::CPC::define() 2 2.359e-05 2.795e-05 3.561e-05 0.00%
Castro::enforce_speed_limit() 62 2.359e-05 2.764e-05 3.2e-05 0.00%
Gravity::swapTimeLevels() 10 5.192e-06 1.179e-05 1.672e-05 0.00%
Amr::initSubcycle() 1 8.293e-06 1.083e-05 1.649e-05 0.00%
Castro::create_source_corrector() 10 6.281e-06 1.175e-05 1.544e-05 0.00%
Gravity::set_mass_offset() 10 7.42e-06 1.081e-05 1.304e-05 0.00%
Castro::FluxRegCrseInit 10 5.896e-06 8.948e-06 1.179e-05 0.00%
Castro::retry_advance_ctu() 10 3.733e-06 5.636e-06 7.392e-06 0.00%
Castro::FluxRegFineAdd() 10 1.967e-06 2.32e-06 2.688e-06 0.00%
DistributionMapping::Distribute() 1 1.044e-06 1.318e-06 1.731e-06 0.00%
-------------------------------------------------------------------------------------------
Unused ParmParse Variables:
[TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2]
[TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2]
AMReX (22.06-8-g8a1c76c0af89) finalized