MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.06-13-g7b335c5f9617) initialized Starting run at 05:38:11 UTC on 2022-06-09. Successfully read inputs file ... Castro git describe: 22.06-9-g26873b1cc AMReX git describe: 22.06-13-g7b335c5f9 Microphysics git describe: 22.06-1-gb8e427c1 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014103566 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.359832558 [STEP 1] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.336650933 [STEP 2] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.337234821 [STEP 3] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.337063451 [STEP 4] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.338518882 [STEP 5] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.352859629 [STEP 6] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.333209064 [STEP 7] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.334574067 [STEP 8] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.334393169 [STEP 9] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.333800334 [STEP 10] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009868568 seconds Ending run at 05:38:14 UTC on 2022-06-09. Run time = 3.589766313 Run time without initialization = 3.414351577 Average number of zones advanced per microsecond: 0.768 Average number of zones advanced per microsecond per rank: 0.096 TinyProfiler total time across processes [min...avg...max]: 3.587 ... 3.589 ... 3.59 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1048 2.3739 2.4652 68.67% Castro::do_advance_ctu() 10 0.03748 0.1288 0.4006 11.16% Gravity::make_radial_gravity() 21 0.351 0.3608 0.3883 10.82% FabArray::ParallelCopy_finish() 41 0.04731 0.06492 0.1306 3.64% Castro::initData() 1 0.03885 0.07775 0.1116 3.11% Castro::estTimeStep() 21 0.02187 0.06027 0.1067 2.97% FabArray::setVal() 143 0.06002 0.06897 0.0715 1.99% Castro::reset_internal_energy(Fab) 1008 0.04638 0.0495 0.05081 1.42% FabArray::ParallelCopy_nowait() 41 0.02521 0.04258 0.04798 1.34% StateData::FillBoundary(geom) 41 0.03592 0.04172 0.0463 1.29% Castro::normalize_species() 62 0.03965 0.04161 0.04239 1.18% FillPatchIterator::Initialize 41 0.01918 0.03203 0.03699 1.03% Gravity::interpolate_monopole_grav() 21 0.02641 0.02748 0.02828 0.79% Castro::construct_new_gravity_source() 10 0.01759 0.02281 0.0242 0.67% Castro::expand_state() 10 0.009623 0.01909 0.02236 0.62% Castro::computeTemp() 63 0.01762 0.0187 0.01961 0.55% Castro::initialize_do_advance() 10 0.008317 0.01642 0.01816 0.51% MultiFab::Saxpy() 20 0.008538 0.01442 0.01639 0.46% FabArray::setDomainBndry() 41 0.004852 0.01222 0.01596 0.44% VisMF::Write(FabArray) 2 0.01184 0.01244 0.01498 0.42% Amr::writePlotFile() 2 0.009206 0.01185 0.01257 0.35% Gravity::get_new_grav_vector() 11 0.008488 0.01129 0.01226 0.34% Castro::construct_old_gravity_source() 10 0.004886 0.01006 0.0118 0.33% MultiFab::contains_nan() 20 0.009377 0.01073 0.01121 0.31% Gravity::get_old_grav_vector() 10 0.005545 0.009772 0.0109 0.30% Castro::initialize_advance() 10 0.006308 0.009607 0.01024 0.29% Castro::enforce_min_density() 62 0.005883 0.006775 0.007125 0.20% Castro::initMFs() 1 0.0055 0.0059 0.007042 0.20% Castro::construct_new_source() 50 0.004855 0.006482 0.006995 0.19% main() 1 0.00323 0.004835 0.005574 0.16% StateData::define() 4 0.00459 0.00475 0.00515 0.14% Castro::swap_state_time_levels() 10 0.002528 0.003636 0.004337 0.12% Amr::coarseTimeStep() 10 0.001313 0.002111 0.003429 0.10% Castro::buildMetrics() 1 0.001296 0.001352 0.001478 0.04% Castro::finalize_do_advance() 10 0.0005413 0.001104 0.001262 0.04% Amr::timeStep() 10 0.0001715 0.000249 0.0005608 0.02% Amr::InitAmr() 1 0.0002751 0.0002982 0.0003966 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002829 0.0002955 0.0003273 0.01% Castro::clean_state() 62 0.0001325 0.0001596 0.0001772 0.00% StateDataPhysBCFunct::() 41 9.602e-05 0.0001236 0.0001388 0.00% DistributionMapping::LeastUsedCPUs() 1 7.505e-06 0.0001058 0.000131 0.00% FabArray::ParallelCopy() 41 6.176e-05 8.729e-05 9.751e-05 0.00% Castro::construct_old_source() 50 3.616e-05 7.321e-05 9.687e-05 0.00% Castro::enforce_consistent_e() 1 8.23e-05 8.677e-05 9.321e-05 0.00% FillPatchSingleLevel 41 5.512e-05 6.916e-05 9.028e-05 0.00% Castro::do_new_sources() 10 4.497e-05 6.798e-05 8.639e-05 0.00% Castro::Castro() 1 4.953e-05 6.603e-05 8.599e-05 0.00% Castro::do_old_sources() 10 3.741e-05 6.488e-05 7.883e-05 0.00% Amr::FinalizeInit() 1 4.302e-06 1.348e-05 7.246e-05 0.00% Castro::construct_old_gravity() 10 3.504e-05 5.525e-05 7.179e-05 0.00% Amr::writeSmallPlotFile() 1 3.09e-05 5.267e-05 7.001e-05 0.00% Castro::finalize_advance() 10 4.669e-05 5.145e-05 6.536e-05 0.00% FabArrayBase::getCPC() 41 4.074e-05 5.222e-05 5.924e-05 0.00% Castro::subcycle_advance_ctu() 10 3.174e-05 4.784e-05 5.862e-05 0.00% Castro::apply_source_to_state() 20 3e-05 4.82e-05 5.674e-05 0.00% Castro::advance() 10 3.832e-05 4.401e-05 5.46e-05 0.00% Castro::construct_new_gravity() 10 3.484e-05 4.398e-05 4.742e-05 0.00% Amr::defBaseLevel() 1 2.585e-05 3.232e-05 4.487e-05 0.00% Castro::computeNewDt() 9 7.878e-06 2.035e-05 4.258e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.608e-05 2.663e-05 3.251e-05 0.00% Castro::enforce_speed_limit() 62 2.182e-05 2.671e-05 3.113e-05 0.00% FabArrayBase::CPC::define() 2 2.333e-05 2.558e-05 2.88e-05 0.00% Castro::post_timestep() 10 1.199e-05 1.594e-05 2.825e-05 0.00% Castro::check_for_nan() 20 2.159e-05 2.495e-05 2.756e-05 0.00% Gravity::swapTimeLevels() 10 6.072e-06 1.147e-05 1.5e-05 0.00% Castro::FluxRegCrseInit 10 5.919e-06 9.213e-06 1.47e-05 0.00% Gravity::set_mass_offset() 10 6.557e-06 1.041e-05 1.461e-05 0.00% Castro::post_init() 1 8.296e-06 1.042e-05 1.453e-05 0.00% Castro::create_source_corrector() 10 5.957e-06 9.829e-06 1.226e-05 0.00% Amr::initSubcycle() 1 8.016e-06 8.936e-06 1.081e-05 0.00% Castro::retry_advance_ctu() 10 3.679e-06 6.215e-06 1.035e-05 0.00% Amr::InitializeInit() 1 1.899e-06 2.795e-06 6.129e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.657e-06 4.415e-06 6.079e-06 0.00% Castro::computeInitialDt() 2 3.835e-06 4.643e-06 5.706e-06 0.00% Castro::post_regrid() 1 2.095e-06 2.968e-06 4.308e-06 0.00% Amr::init() 1 1.888e-06 2.413e-06 2.899e-06 0.00% Castro::FluxRegFineAdd() 10 1.923e-06 2.42e-06 2.765e-06 0.00% Amr::initialInit() 1 1.1e-06 1.401e-06 1.909e-06 0.00% DistributionMapping::Distribute() 1 9e-07 1.126e-06 1.682e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.587 3.589 3.59 100.00% Amr::coarseTimeStep() 10 3.399 3.399 3.399 94.68% Amr::timeStep() 10 3.385 3.387 3.389 94.40% Castro::advance() 10 3.37 3.371 3.372 93.95% Castro::subcycle_advance_ctu() 10 3.299 3.301 3.31 92.21% Castro::do_advance_ctu() 10 3.299 3.301 3.31 92.21% Castro::construct_ctu_hydro_source() 10 2.105 2.374 2.465 68.67% Gravity::make_radial_gravity() 21 0.351 0.3608 0.3883 10.82% Castro::construct_old_gravity() 10 0.2096 0.2171 0.2379 6.63% Gravity::get_old_grav_vector() 10 0.2087 0.2163 0.2373 6.61% Gravity::get_new_grav_vector() 11 0.2322 0.2336 0.2344 6.53% FillPatchIterator::Initialize 41 0.1876 0.1938 0.216 6.02% Castro::construct_new_gravity() 10 0.2058 0.207 0.2078 5.79% FillPatchSingleLevel 41 0.1369 0.1496 0.192 5.35% Castro::initialize_do_advance() 10 0.1625 0.177 0.1835 5.11% Amr::init() 1 0.1749 0.175 0.175 4.88% Amr::initialInit() 1 0.1604 0.1607 0.1609 4.48% FabArray::ParallelCopy() 41 0.09469 0.1077 0.1559 4.34% Castro::expand_state() 10 0.1179 0.1304 0.1344 3.74% Amr::InitializeInit() 1 0.05788 0.09667 0.131 3.65% Amr::defBaseLevel() 1 0.05788 0.09667 0.131 3.65% FabArray::ParallelCopy_finish() 41 0.04731 0.06492 0.1306 3.64% Castro::clean_state() 62 0.109 0.1161 0.1185 3.30% Castro::initData() 1 0.04357 0.08192 0.1156 3.22% Castro::estTimeStep() 21 0.02187 0.06027 0.1067 2.97% Amr::FinalizeInit() 1 0.02966 0.064 0.1028 2.86% Castro::computeInitialDt() 2 0.001867 0.03619 0.07492 2.09% Castro::initialize_advance() 10 0.06111 0.07012 0.07244 2.02% FabArray::setVal() 143 0.06002 0.06897 0.0715 1.99% Castro::computeTemp() 63 0.06428 0.06849 0.07071 1.97% Castro::do_new_sources() 10 0.05088 0.06248 0.06567 1.83% Castro::reset_internal_energy(MultiFab) 63 0.04667 0.04979 0.0511 1.42% Castro::reset_internal_energy(Fab) 1008 0.04638 0.0495 0.05081 1.42% Castro::do_old_sources() 10 0.03215 0.04552 0.04902 1.37% FabArray::ParallelCopy_nowait() 41 0.02527 0.04266 0.04806 1.34% StateDataPhysBCFunct::() 41 0.03601 0.04184 0.04642 1.29% StateData::FillBoundary(geom) 41 0.03592 0.04172 0.0463 1.29% Castro::normalize_species() 62 0.03965 0.04161 0.04239 1.18% Castro::construct_new_source() 50 0.02244 0.02929 0.03119 0.87% Gravity::interpolate_monopole_grav() 21 0.02641 0.02748 0.02828 0.79% Castro::post_init() 1 0.02715 0.02736 0.02755 0.77% Amr::writePlotFile() 2 0.02403 0.02429 0.0245 0.68% Castro::construct_new_gravity_source() 10 0.01759 0.02281 0.0242 0.67% Castro::apply_source_to_state() 20 0.008568 0.01447 0.01644 0.46% MultiFab::Saxpy() 20 0.008538 0.01442 0.01639 0.46% Castro::post_timestep() 10 0.01476 0.01572 0.01636 0.46% FabArray::setDomainBndry() 41 0.004852 0.01222 0.01596 0.44% VisMF::Write(FabArray) 2 0.01184 0.01244 0.01498 0.42% Castro::construct_old_source() 50 0.004922 0.01014 0.01189 0.33% Castro::construct_old_gravity_source() 10 0.004886 0.01006 0.0118 0.33% Castro::check_for_nan() 20 0.009398 0.01076 0.01123 0.31% MultiFab::contains_nan() 20 0.009377 0.01073 0.01121 0.31% Castro::Castro() 1 0.009498 0.009828 0.01074 0.30% Castro::computeNewDt() 9 0.00774 0.008355 0.009671 0.27% Castro::enforce_min_density() 62 0.005883 0.006775 0.007125 0.20% Castro::initMFs() 1 0.0055 0.0059 0.007042 0.20% AmrLevel::AmrLevel(dm) 1 0.004622 0.004777 0.005183 0.14% StateData::define() 4 0.00459 0.00475 0.00515 0.14% Castro::swap_state_time_levels() 10 0.002528 0.003636 0.004337 0.12% Castro::post_regrid() 1 0.001517 0.001626 0.001871 0.05% Castro::buildMetrics() 1 0.001417 0.001485 0.001633 0.05% Castro::finalize_do_advance() 10 0.0005413 0.001104 0.001262 0.04% Amr::InitAmr() 1 0.0002836 0.0003071 0.0004048 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.232e-05 0.0001113 0.0001387 0.00% DistributionMapping::LeastUsedCPUs() 1 7.505e-06 0.0001058 0.000131 0.00% Castro::enforce_consistent_e() 1 8.23e-05 8.677e-05 9.321e-05 0.00% FabArrayBase::getCPC() 41 6.407e-05 7.78e-05 8.754e-05 0.00% Castro::finalize_advance() 10 5.534e-05 6.308e-05 8.232e-05 0.00% Amr::writeSmallPlotFile() 1 3.09e-05 5.267e-05 7.001e-05 0.00% Castro::enforce_speed_limit() 62 2.182e-05 2.671e-05 3.113e-05 0.00% FabArrayBase::CPC::define() 2 2.333e-05 2.558e-05 2.88e-05 0.00% Gravity::swapTimeLevels() 10 6.072e-06 1.147e-05 1.5e-05 0.00% Castro::FluxRegCrseInit 10 5.919e-06 9.213e-06 1.47e-05 0.00% Gravity::set_mass_offset() 10 6.557e-06 1.041e-05 1.461e-05 0.00% Castro::create_source_corrector() 10 5.957e-06 9.829e-06 1.226e-05 0.00% Amr::initSubcycle() 1 8.016e-06 8.936e-06 1.081e-05 0.00% Castro::retry_advance_ctu() 10 3.679e-06 6.215e-06 1.035e-05 0.00% Castro::FluxRegFineAdd() 10 1.923e-06 2.42e-06 2.765e-06 0.00% DistributionMapping::Distribute() 1 9e-07 1.126e-06 1.682e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.06-13-g7b335c5f9617) finalized