MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.06-15-ge113ff7dcf29) initialized Starting run at 05:38:29 UTC on 2022-06-10. Successfully read inputs file ... Castro git describe: 22.06-11-gef6a933cb AMReX git describe: 22.06-15-ge113ff7dc Microphysics git describe: 22.06-1-gb8e427c1 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.013335296 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.349088436 [STEP 1] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.338748124 [STEP 2] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.33774816 [STEP 3] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.337761257 [STEP 4] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.337365479 [STEP 5] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.342091634 [STEP 6] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.331926348 [STEP 7] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.333106075 [STEP 8] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.332677663 [STEP 9] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.333584778 [STEP 10] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009671279 seconds Ending run at 05:38:32 UTC on 2022-06-10. Run time = 3.574522676 Run time without initialization = 3.390442802 Average number of zones advanced per microsecond: 0.773 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.572 ... 3.574 ... 3.575 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.0527 2.3535 2.4605 68.83% Castro::do_advance_ctu() 10 0.03077 0.1376 0.4414 12.35% Gravity::make_radial_gravity() 21 0.333 0.3482 0.3722 10.41% Castro::initData() 1 0.03949 0.07962 0.1237 3.46% Castro::estTimeStep() 21 0.01921 0.06828 0.1062 2.97% FabArray::ParallelCopy_finish() 41 0.03761 0.05593 0.1051 2.94% FabArray::setVal() 143 0.0623 0.07093 0.07474 2.09% Castro::reset_internal_energy(Fab) 1008 0.04585 0.04924 0.05209 1.46% FabArray::ParallelCopy_nowait() 41 0.03185 0.04406 0.04984 1.39% StateData::FillBoundary(geom) 41 0.03584 0.04148 0.04665 1.31% Castro::normalize_species() 62 0.0387 0.04119 0.04253 1.19% FillPatchIterator::Initialize 41 0.02092 0.03244 0.03644 1.02% Gravity::interpolate_monopole_grav() 21 0.02547 0.02726 0.02794 0.78% Castro::construct_new_gravity_source() 10 0.02052 0.02362 0.02499 0.70% Castro::expand_state() 10 0.009956 0.01885 0.02266 0.63% Castro::initialize_do_advance() 10 0.009965 0.01769 0.02044 0.57% Castro::computeTemp() 63 0.01728 0.01868 0.01992 0.56% MultiFab::Saxpy() 20 0.01162 0.01516 0.01657 0.46% FabArray::setDomainBndry() 41 0.005112 0.01245 0.01579 0.44% VisMF::Write(FabArray) 2 0.01062 0.01151 0.01378 0.39% Gravity::get_new_grav_vector() 11 0.009274 0.01171 0.01286 0.36% Amr::writePlotFile() 2 0.009432 0.01182 0.01269 0.35% MultiFab::contains_nan() 20 0.009937 0.01106 0.01227 0.34% Castro::construct_old_gravity_source() 10 0.005824 0.01053 0.01214 0.34% Castro::initialize_advance() 10 0.01049 0.01083 0.0116 0.32% Gravity::get_old_grav_vector() 10 0.007422 0.009903 0.01108 0.31% Castro::enforce_min_density() 62 0.006067 0.006714 0.00723 0.20% Castro::construct_new_source() 50 0.005216 0.006603 0.007131 0.20% Castro::initMFs() 1 0.005399 0.005885 0.006507 0.18% main() 1 0.003322 0.005247 0.00596 0.17% StateData::define() 4 0.004521 0.004755 0.005055 0.14% Castro::swap_state_time_levels() 10 0.002973 0.003886 0.004029 0.11% Amr::coarseTimeStep() 10 0.001135 0.002256 0.004019 0.11% Castro::buildMetrics() 1 0.001262 0.00136 0.001492 0.04% Castro::finalize_do_advance() 10 0.0006494 0.001186 0.001366 0.04% Amr::timeStep() 10 0.000175 0.0002521 0.000518 0.01% Amr::InitAmr() 1 0.0002614 0.0002893 0.0003802 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002684 0.0002947 0.0003106 0.01% Castro::clean_state() 62 0.0001331 0.0001592 0.0001782 0.00% StateDataPhysBCFunct::() 41 9.847e-05 0.0001332 0.0001546 0.00% DistributionMapping::LeastUsedCPUs() 1 8.186e-06 0.0001004 0.0001211 0.00% Castro::enforce_consistent_e() 1 7.725e-05 8.858e-05 0.0001094 0.00% FabArray::ParallelCopy() 41 6.993e-05 8.835e-05 0.0001067 0.00% Castro::construct_old_source() 50 4.004e-05 7.634e-05 9.929e-05 0.00% FillPatchSingleLevel 41 5.434e-05 6.907e-05 9.161e-05 0.00% Amr::FinalizeInit() 1 3.499e-06 1.688e-05 9.058e-05 0.00% Castro::Castro() 1 5.001e-05 6.168e-05 8.566e-05 0.00% Castro::do_new_sources() 10 4.417e-05 7.003e-05 8.357e-05 0.00% Castro::do_old_sources() 10 4.705e-05 6.443e-05 7.394e-05 0.00% Castro::subcycle_advance_ctu() 10 3.326e-05 5.179e-05 7.091e-05 0.00% Castro::advance() 10 2.971e-05 4.777e-05 6.939e-05 0.00% Amr::writeSmallPlotFile() 1 3.006e-05 5.229e-05 6.751e-05 0.00% Castro::construct_old_gravity() 10 3.897e-05 5.251e-05 6.407e-05 0.00% FabArrayBase::getCPC() 41 5.016e-05 5.389e-05 6.253e-05 0.00% Castro::finalize_advance() 10 5.303e-05 5.561e-05 5.966e-05 0.00% Castro::apply_source_to_state() 20 3.449e-05 4.8e-05 5.729e-05 0.00% Castro::construct_new_gravity() 10 3.878e-05 4.579e-05 5.643e-05 0.00% Castro::computeNewDt() 9 7.394e-06 1.602e-05 5.537e-05 0.00% Amr::defBaseLevel() 1 2.65e-05 2.981e-05 3.533e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.644e-05 2.226e-05 3.13e-05 0.00% Castro::enforce_speed_limit() 62 2.117e-05 2.619e-05 2.991e-05 0.00% Castro::check_for_nan() 20 2.287e-05 2.568e-05 2.85e-05 0.00% FabArrayBase::CPC::define() 2 2.421e-05 2.655e-05 2.841e-05 0.00% Castro::post_timestep() 10 1.268e-05 1.876e-05 2.433e-05 0.00% Gravity::swapTimeLevels() 10 6.629e-06 1.244e-05 1.584e-05 0.00% Castro::FluxRegCrseInit 10 5.838e-06 9.84e-06 1.469e-05 0.00% Castro::post_init() 1 8.056e-06 9.975e-06 1.438e-05 0.00% Gravity::set_mass_offset() 10 6.704e-06 1.066e-05 1.336e-05 0.00% Castro::create_source_corrector() 10 7.795e-06 1.021e-05 1.233e-05 0.00% Amr::initSubcycle() 1 8.059e-06 8.868e-06 9.305e-06 0.00% Castro::retry_advance_ctu() 10 3.084e-06 5.372e-06 7.114e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.581e-06 4.999e-06 6.367e-06 0.00% Amr::InitializeInit() 1 2.236e-06 2.941e-06 6.344e-06 0.00% Castro::computeInitialDt() 2 3.621e-06 4.43e-06 5.674e-06 0.00% Amr::init() 1 2.197e-06 3.01e-06 5.561e-06 0.00% Castro::post_regrid() 1 1.944e-06 3.016e-06 4.52e-06 0.00% Castro::FluxRegFineAdd() 10 1.731e-06 2.223e-06 2.647e-06 0.00% Amr::initialInit() 1 1.183e-06 1.462e-06 1.959e-06 0.00% DistributionMapping::Distribute() 1 1.063e-06 1.297e-06 1.517e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.572 3.574 3.575 100.00% Amr::coarseTimeStep() 10 3.375 3.375 3.375 94.41% Amr::timeStep() 10 3.362 3.364 3.366 94.16% Castro::advance() 10 3.347 3.348 3.349 93.68% Castro::subcycle_advance_ctu() 10 3.272 3.277 3.285 91.91% Castro::do_advance_ctu() 10 3.272 3.276 3.285 91.91% Castro::construct_ctu_hydro_source() 10 2.053 2.353 2.461 68.83% Gravity::make_radial_gravity() 21 0.333 0.3482 0.3722 10.41% Castro::construct_old_gravity() 10 0.1978 0.2111 0.2301 6.44% Gravity::get_new_grav_vector() 11 0.2256 0.2277 0.2293 6.42% Gravity::get_old_grav_vector() 10 0.197 0.2102 0.229 6.41% Castro::construct_new_gravity() 10 0.2022 0.2038 0.2052 5.74% FillPatchIterator::Initialize 41 0.1783 0.1867 0.2003 5.60% Amr::init() 1 0.1836 0.1837 0.1837 5.14% Castro::initialize_do_advance() 10 0.1589 0.1707 0.177 4.95% FillPatchSingleLevel 41 0.1275 0.1418 0.1735 4.85% Amr::initialInit() 1 0.17 0.1701 0.1702 4.76% Amr::InitializeInit() 1 0.05729 0.09832 0.1431 4.00% Amr::defBaseLevel() 1 0.05729 0.09832 0.1431 4.00% FabArray::ParallelCopy() 41 0.08498 0.1002 0.1371 3.84% Castro::expand_state() 10 0.1152 0.1228 0.1278 3.58% Castro::initData() 1 0.04359 0.08366 0.1274 3.56% Castro::clean_state() 62 0.1075 0.1154 0.12 3.36% Amr::FinalizeInit() 1 0.02686 0.07177 0.1128 3.16% Castro::estTimeStep() 21 0.01921 0.06828 0.1062 2.97% FabArray::ParallelCopy_finish() 41 0.03761 0.05593 0.1051 2.94% Castro::computeInitialDt() 2 0.001596 0.04643 0.08737 2.44% Castro::initialize_advance() 10 0.06177 0.07137 0.07592 2.12% FabArray::setVal() 143 0.0623 0.07093 0.07474 2.09% Castro::computeTemp() 63 0.06342 0.06821 0.0723 2.02% Castro::do_new_sources() 10 0.05645 0.06416 0.06745 1.89% Castro::reset_internal_energy(MultiFab) 63 0.04614 0.04953 0.05238 1.47% Castro::reset_internal_energy(Fab) 1008 0.04585 0.04924 0.05209 1.46% Castro::do_old_sources() 10 0.04055 0.0475 0.05006 1.40% FabArray::ParallelCopy_nowait() 41 0.03194 0.04414 0.04992 1.40% StateDataPhysBCFunct::() 41 0.03596 0.04161 0.0468 1.31% StateData::FillBoundary(geom) 41 0.03584 0.04148 0.04665 1.31% Castro::normalize_species() 62 0.0387 0.04119 0.04253 1.19% Castro::construct_new_source() 50 0.02573 0.03022 0.03208 0.90% Gravity::interpolate_monopole_grav() 21 0.02547 0.02726 0.02794 0.78% Castro::construct_new_gravity_source() 10 0.02052 0.02362 0.02499 0.70% Castro::post_init() 1 0.02458 0.02467 0.02476 0.69% Amr::writePlotFile() 2 0.02321 0.02332 0.02347 0.66% Castro::post_timestep() 10 0.01425 0.01567 0.0167 0.47% Castro::apply_source_to_state() 20 0.01166 0.01521 0.01662 0.47% MultiFab::Saxpy() 20 0.01162 0.01516 0.01657 0.46% FabArray::setDomainBndry() 41 0.005112 0.01245 0.01579 0.44% VisMF::Write(FabArray) 2 0.01062 0.01151 0.01378 0.39% Castro::check_for_nan() 20 0.00996 0.01109 0.0123 0.34% MultiFab::contains_nan() 20 0.009937 0.01106 0.01227 0.34% Castro::construct_old_source() 50 0.005864 0.01061 0.01223 0.34% Castro::construct_old_gravity_source() 10 0.005824 0.01053 0.01214 0.34% Castro::Castro() 1 0.009049 0.009742 0.01052 0.29% Castro::computeNewDt() 9 0.007085 0.007684 0.008335 0.23% Castro::enforce_min_density() 62 0.006067 0.006714 0.00723 0.20% Castro::initMFs() 1 0.005399 0.005885 0.006507 0.18% AmrLevel::AmrLevel(dm) 1 0.004539 0.004777 0.005074 0.14% StateData::define() 4 0.004521 0.004755 0.005055 0.14% Castro::swap_state_time_levels() 10 0.002973 0.003886 0.004029 0.11% Castro::buildMetrics() 1 0.001375 0.001489 0.001633 0.05% Castro::post_regrid() 1 0.001523 0.001571 0.001621 0.05% Castro::finalize_do_advance() 10 0.0006494 0.001186 0.001366 0.04% Amr::InitAmr() 1 0.0002706 0.0002982 0.0003886 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.299e-05 0.0001067 0.0001283 0.00% DistributionMapping::LeastUsedCPUs() 1 8.186e-06 0.0001004 0.0001211 0.00% Castro::enforce_consistent_e() 1 7.725e-05 8.858e-05 0.0001094 0.00% FabArrayBase::getCPC() 41 7.674e-05 8.045e-05 9.088e-05 0.00% Castro::finalize_advance() 10 6.129e-05 6.767e-05 7.386e-05 0.00% Amr::writeSmallPlotFile() 1 3.006e-05 5.229e-05 6.751e-05 0.00% Castro::enforce_speed_limit() 62 2.117e-05 2.619e-05 2.991e-05 0.00% FabArrayBase::CPC::define() 2 2.421e-05 2.655e-05 2.841e-05 0.00% Gravity::swapTimeLevels() 10 6.629e-06 1.244e-05 1.584e-05 0.00% Castro::FluxRegCrseInit 10 5.838e-06 9.84e-06 1.469e-05 0.00% Gravity::set_mass_offset() 10 6.704e-06 1.066e-05 1.336e-05 0.00% Castro::create_source_corrector() 10 7.795e-06 1.021e-05 1.233e-05 0.00% Amr::initSubcycle() 1 8.059e-06 8.868e-06 9.305e-06 0.00% Castro::retry_advance_ctu() 10 3.084e-06 5.372e-06 7.114e-06 0.00% Castro::FluxRegFineAdd() 10 1.731e-06 2.223e-06 2.647e-06 0.00% DistributionMapping::Distribute() 1 1.063e-06 1.297e-06 1.517e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.06-15-ge113ff7dcf29) finalized