MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.06-25-g1a2fc3dbee1c) initialized Starting run at 05:38:26 UTC on 2022-06-14. Successfully read inputs file ... Castro git describe: 22.06-12-g556652b03 AMReX git describe: 22.06-25-g1a2fc3dbe Microphysics git describe: 22.06-1-gb8e427c1 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014319035 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.362220667 [STEP 1] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.335857753 [STEP 2] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.334912285 [STEP 3] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.334744977 [STEP 4] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.33689092 [STEP 5] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.348412612 [STEP 6] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.332555308 [STEP 7] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.332212988 [STEP 8] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.33318045 [STEP 9] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.332670999 [STEP 10] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009537153 seconds Ending run at 05:38:29 UTC on 2022-06-14. Run time = 3.580990607 Run time without initialization = 3.399283356 Average number of zones advanced per microsecond: 0.771 Average number of zones advanced per microsecond per rank: 0.096 TinyProfiler total time across processes [min...avg...max]: 3.581 ... 3.581 ... 3.581 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.0819 2.3618 2.4573 68.62% Castro::do_advance_ctu() 10 0.03903 0.1359 0.4182 11.68% Gravity::make_radial_gravity() 21 0.335 0.3539 0.381 10.64% FabArray::ParallelCopy_finish() 41 0.04358 0.06395 0.1294 3.61% Castro::initData() 1 0.04192 0.0782 0.1151 3.21% Castro::estTimeStep() 21 0.02943 0.06415 0.09834 2.75% FabArray::setVal() 143 0.04985 0.06834 0.0714 1.99% Castro::reset_internal_energy(Fab) 1008 0.04551 0.04978 0.05226 1.46% FabArray::ParallelCopy_nowait() 41 0.02546 0.04287 0.04856 1.36% StateData::FillBoundary(geom) 41 0.03644 0.04215 0.04655 1.30% Castro::normalize_species() 62 0.04024 0.04162 0.04218 1.18% FillPatchIterator::Initialize 41 0.02046 0.0323 0.03684 1.03% Gravity::interpolate_monopole_grav() 21 0.02704 0.02783 0.02856 0.80% Castro::construct_new_gravity_source() 10 0.01809 0.02285 0.02415 0.67% Castro::expand_state() 10 0.009784 0.01758 0.0208 0.58% Castro::computeTemp() 63 0.01658 0.01859 0.01993 0.56% Castro::initialize_do_advance() 10 0.008902 0.01653 0.0183 0.51% MultiFab::Saxpy() 20 0.008508 0.01428 0.01661 0.46% FabArray::setDomainBndry() 41 0.006198 0.01176 0.01478 0.41% VisMF::Write(FabArray) 2 0.01137 0.01206 0.01455 0.41% MultiFab::contains_nan() 20 0.009647 0.01125 0.01338 0.37% Amr::writePlotFile() 2 0.00952 0.01178 0.01254 0.35% Gravity::get_new_grav_vector() 11 0.008829 0.01116 0.01246 0.35% Castro::construct_old_gravity_source() 10 0.004879 0.01003 0.01183 0.33% Gravity::get_old_grav_vector() 10 0.005709 0.009438 0.0109 0.30% Castro::initialize_advance() 10 0.007095 0.009956 0.01088 0.30% Castro::initMFs() 1 0.005331 0.006327 0.008335 0.23% Castro::enforce_min_density() 62 0.005954 0.006726 0.007319 0.20% Castro::construct_new_source() 50 0.004862 0.006481 0.007054 0.20% StateData::define() 4 0.004469 0.005159 0.006594 0.18% main() 1 0.004984 0.005228 0.005474 0.15% Castro::swap_state_time_levels() 10 0.002841 0.003712 0.004308 0.12% Amr::coarseTimeStep() 10 0.001107 0.00206 0.00378 0.11% Castro::buildMetrics() 1 0.001279 0.001478 0.001902 0.05% Castro::finalize_do_advance() 10 0.0005306 0.001063 0.00128 0.04% Amr::InitAmr() 1 0.0002671 0.0003426 0.00046 0.01% Amr::timeStep() 10 0.0001643 0.0002154 0.0004551 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002874 0.0003309 0.0004232 0.01% DistributionMapping::LeastUsedCPUs() 1 8.478e-06 0.0001431 0.0002218 0.01% Castro::clean_state() 62 0.0001356 0.0001578 0.0001873 0.01% StateDataPhysBCFunct::() 41 0.0001242 0.0001366 0.000149 0.00% FabArray::ParallelCopy() 41 6.471e-05 8.33e-05 9.61e-05 0.00% Castro::subcycle_advance_ctu() 10 3.337e-05 6.181e-05 9.471e-05 0.00% Castro::construct_old_source() 50 3.274e-05 7.45e-05 9.334e-05 0.00% Castro::do_new_sources() 10 3.837e-05 6.828e-05 9.071e-05 0.00% Castro::enforce_consistent_e() 1 7.982e-05 8.568e-05 8.942e-05 0.00% Castro::Castro() 1 4.931e-05 6.139e-05 8.03e-05 0.00% FillPatchSingleLevel 41 6.452e-05 7.119e-05 8.011e-05 0.00% Castro::do_old_sources() 10 3.756e-05 6.363e-05 7.576e-05 0.00% Amr::FinalizeInit() 1 3.359e-06 1.319e-05 7.508e-05 0.00% Castro::advance() 10 3.235e-05 4.963e-05 7.444e-05 0.00% Castro::apply_source_to_state() 20 3.55e-05 5.021e-05 7.158e-05 0.00% Castro::construct_old_gravity() 10 3.458e-05 5.531e-05 6.783e-05 0.00% FabArrayBase::getCPC() 41 4.377e-05 5.312e-05 5.865e-05 0.00% Castro::finalize_advance() 10 4.369e-05 5.079e-05 5.768e-05 0.00% Amr::writeSmallPlotFile() 1 2.416e-05 4.34e-05 5.598e-05 0.00% Castro::construct_new_gravity() 10 3.384e-05 4.447e-05 5.16e-05 0.00% Amr::defBaseLevel() 1 2.633e-05 3.212e-05 3.932e-05 0.00% Castro::enforce_speed_limit() 62 2.063e-05 2.651e-05 3.574e-05 0.00% Castro::post_timestep() 10 1.195e-05 2.036e-05 3.356e-05 0.00% FabArrayBase::CPC::define() 2 2.335e-05 2.829e-05 3.262e-05 0.00% Castro::check_for_nan() 20 1.819e-05 2.391e-05 2.756e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.409e-05 1.899e-05 2.728e-05 0.00% Castro::create_source_corrector() 10 7.574e-06 1.124e-05 1.671e-05 0.00% Gravity::swapTimeLevels() 10 4.705e-06 1.184e-05 1.577e-05 0.00% Amr::initSubcycle() 1 8.125e-06 1.014e-05 1.403e-05 0.00% Castro::post_init() 1 8.674e-06 1.005e-05 1.275e-05 0.00% Gravity::set_mass_offset() 10 6.051e-06 9.905e-06 1.255e-05 0.00% Castro::FluxRegCrseInit 10 5.49e-06 8.869e-06 1.215e-05 0.00% Castro::computeNewDt() 9 7.713e-06 1.004e-05 1.213e-05 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.085e-06 5.329e-06 9.068e-06 0.00% Amr::initialInit() 1 9.82e-07 2.397e-06 8.596e-06 0.00% Castro::retry_advance_ctu() 10 4.39e-06 6.15e-06 7.611e-06 0.00% Amr::InitializeInit() 1 2.104e-06 2.993e-06 7.388e-06 0.00% Castro::computeInitialDt() 2 2.915e-06 3.989e-06 5.203e-06 0.00% Castro::post_regrid() 1 1.556e-06 2.716e-06 4.06e-06 0.00% Castro::FluxRegFineAdd() 10 1.934e-06 2.344e-06 2.928e-06 0.00% Amr::init() 1 1.77e-06 2.295e-06 2.639e-06 0.00% DistributionMapping::Distribute() 1 9.44e-07 1.235e-06 1.47e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.581 3.581 3.581 100.00% Amr::coarseTimeStep() 10 3.384 3.384 3.384 94.51% Amr::timeStep() 10 3.372 3.374 3.375 94.25% Castro::advance() 10 3.358 3.358 3.358 93.78% Castro::subcycle_advance_ctu() 10 3.283 3.287 3.304 92.26% Castro::do_advance_ctu() 10 3.283 3.287 3.304 92.26% Castro::construct_ctu_hydro_source() 10 2.082 2.362 2.457 68.62% Gravity::make_radial_gravity() 21 0.335 0.3539 0.381 10.64% Castro::construct_old_gravity() 10 0.1971 0.214 0.2346 6.55% Gravity::get_old_grav_vector() 10 0.1963 0.2132 0.234 6.53% Gravity::get_new_grav_vector() 11 0.2279 0.2298 0.2316 6.47% FillPatchIterator::Initialize 41 0.1817 0.1934 0.2208 6.17% Castro::construct_new_gravity() 10 0.2017 0.2033 0.2049 5.72% FillPatchSingleLevel 41 0.1316 0.1494 0.1925 5.38% Castro::initialize_do_advance() 10 0.1592 0.175 0.1865 5.21% Amr::init() 1 0.1811 0.1812 0.1813 5.06% Amr::initialInit() 1 0.1667 0.167 0.1674 4.67% FabArray::ParallelCopy() 41 0.09075 0.107 0.155 4.33% Castro::expand_state() 10 0.1139 0.1283 0.1376 3.84% Amr::InitializeInit() 1 0.06032 0.09725 0.1373 3.84% Amr::defBaseLevel() 1 0.06031 0.09725 0.1373 3.84% FabArray::ParallelCopy_finish() 41 0.04358 0.06395 0.1294 3.61% Castro::clean_state() 62 0.1078 0.1163 0.1204 3.36% Castro::initData() 1 0.04543 0.08205 0.1186 3.31% Amr::FinalizeInit() 1 0.02948 0.06973 0.1063 2.97% Castro::estTimeStep() 21 0.02943 0.06415 0.09834 2.75% Castro::computeInitialDt() 2 0.001586 0.04181 0.07866 2.20% Castro::initialize_advance() 10 0.05342 0.07075 0.07464 2.08% Castro::computeTemp() 63 0.06241 0.0687 0.07251 2.02% FabArray::setVal() 143 0.04985 0.06834 0.0714 1.99% Castro::do_new_sources() 10 0.05054 0.06256 0.06555 1.83% Castro::reset_internal_energy(MultiFab) 63 0.04583 0.05011 0.05268 1.47% Castro::reset_internal_energy(Fab) 1008 0.04551 0.04978 0.05226 1.46% Castro::do_old_sources() 10 0.03235 0.04543 0.04894 1.37% FabArray::ParallelCopy_nowait() 41 0.02555 0.04296 0.04863 1.36% StateDataPhysBCFunct::() 41 0.03656 0.04229 0.0467 1.30% StateData::FillBoundary(geom) 41 0.03644 0.04215 0.04655 1.30% Castro::normalize_species() 62 0.04024 0.04162 0.04218 1.18% Castro::construct_new_source() 50 0.02295 0.02933 0.03107 0.87% Gravity::interpolate_monopole_grav() 21 0.02704 0.02783 0.02856 0.80% Castro::post_init() 1 0.02697 0.02721 0.02752 0.77% Castro::construct_new_gravity_source() 10 0.01809 0.02285 0.02415 0.67% Amr::writePlotFile() 2 0.02354 0.02384 0.02407 0.67% Castro::apply_source_to_state() 20 0.00855 0.01433 0.01668 0.47% MultiFab::Saxpy() 20 0.008508 0.01428 0.01661 0.46% Castro::post_timestep() 10 0.01469 0.01584 0.01657 0.46% FabArray::setDomainBndry() 41 0.006198 0.01176 0.01478 0.41% VisMF::Write(FabArray) 2 0.01137 0.01206 0.01455 0.41% Castro::check_for_nan() 20 0.009669 0.01127 0.01341 0.37% MultiFab::contains_nan() 20 0.009647 0.01125 0.01338 0.37% Castro::Castro() 1 0.008759 0.009834 0.01208 0.34% Castro::construct_old_source() 50 0.004912 0.01011 0.01193 0.33% Castro::construct_old_gravity_source() 10 0.004879 0.01003 0.01183 0.33% Castro::initMFs() 1 0.005331 0.006327 0.008335 0.23% Castro::enforce_min_density() 62 0.005954 0.006726 0.007319 0.20% Castro::computeNewDt() 9 0.007239 0.007244 0.00725 0.20% AmrLevel::AmrLevel(dm) 1 0.004495 0.005178 0.006613 0.18% StateData::define() 4 0.004469 0.005159 0.006594 0.18% Castro::swap_state_time_levels() 10 0.002841 0.003712 0.004308 0.12% Castro::buildMetrics() 1 0.001388 0.001622 0.002122 0.06% Castro::post_regrid() 1 0.00152 0.001613 0.00187 0.05% Castro::finalize_do_advance() 10 0.0005306 0.001063 0.00128 0.04% Amr::InitAmr() 1 0.0002761 0.0003527 0.000474 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.497e-05 0.0001497 0.0002286 0.01% DistributionMapping::LeastUsedCPUs() 1 8.478e-06 0.0001431 0.0002218 0.01% Castro::enforce_consistent_e() 1 7.982e-05 8.568e-05 8.942e-05 0.00% FabArrayBase::getCPC() 41 7.273e-05 8.141e-05 8.789e-05 0.00% Castro::finalize_advance() 10 5.122e-05 6.2e-05 7.046e-05 0.00% Amr::writeSmallPlotFile() 1 2.416e-05 4.34e-05 5.598e-05 0.00% Castro::enforce_speed_limit() 62 2.063e-05 2.651e-05 3.574e-05 0.00% FabArrayBase::CPC::define() 2 2.335e-05 2.829e-05 3.262e-05 0.00% Castro::create_source_corrector() 10 7.574e-06 1.124e-05 1.671e-05 0.00% Gravity::swapTimeLevels() 10 4.705e-06 1.184e-05 1.577e-05 0.00% Amr::initSubcycle() 1 8.125e-06 1.014e-05 1.403e-05 0.00% Gravity::set_mass_offset() 10 6.051e-06 9.905e-06 1.255e-05 0.00% Castro::FluxRegCrseInit 10 5.49e-06 8.869e-06 1.215e-05 0.00% Castro::retry_advance_ctu() 10 4.39e-06 6.15e-06 7.611e-06 0.00% Castro::FluxRegFineAdd() 10 1.934e-06 2.344e-06 2.928e-06 0.00% DistributionMapping::Distribute() 1 9.44e-07 1.235e-06 1.47e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.06-25-g1a2fc3dbee1c) finalized