MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.06-31-gcd166dda59b8) initialized Starting run at 05:38:28 UTC on 2022-06-15. Successfully read inputs file ... Castro git describe: 22.06-12-g556652b03 AMReX git describe: 22.06-31-gcd166dda5 Microphysics git describe: 22.06-2-g35a553f4 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.013477241 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.350342975 [STEP 1] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.339022167 [STEP 2] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.337242339 [STEP 3] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.338580557 [STEP 4] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.347567385 [STEP 5] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.342353811 [STEP 6] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.331952036 [STEP 7] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.331493535 [STEP 8] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.332606168 [STEP 9] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.33313661 [STEP 10] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009504093 seconds Ending run at 05:38:32 UTC on 2022-06-15. Run time = 3.602617972 Run time without initialization = 3.399907145 Average number of zones advanced per microsecond: 0.771 Average number of zones advanced per microsecond per rank: 0.096 TinyProfiler total time across processes [min...avg...max]: 3.601 ... 3.602 ... 3.603 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.0559 2.3503 2.4518 68.05% Castro::do_advance_ctu() 10 0.03313 0.1351 0.4334 12.03% Gravity::make_radial_gravity() 21 0.3376 0.353 0.3727 10.35% Castro::initData() 1 0.039 0.0829 0.1393 3.87% Castro::estTimeStep() 21 0.02865 0.08859 0.1345 3.73% FabArray::ParallelCopy_finish() 41 0.04132 0.05995 0.1107 3.07% FabArray::setVal() 143 0.06843 0.07128 0.073 2.03% Castro::reset_internal_energy(Fab) 1008 0.04634 0.04969 0.05148 1.43% FabArray::ParallelCopy_nowait() 41 0.03046 0.04384 0.04926 1.37% StateData::FillBoundary(geom) 41 0.03577 0.04162 0.04576 1.27% Castro::normalize_species() 62 0.04027 0.0414 0.04231 1.17% FillPatchIterator::Initialize 41 0.02004 0.03254 0.03692 1.02% Gravity::interpolate_monopole_grav() 21 0.02615 0.02743 0.02798 0.78% Castro::construct_new_gravity_source() 10 0.02324 0.02439 0.02554 0.71% Castro::expand_state() 10 0.01118 0.01875 0.02252 0.63% Castro::computeTemp() 63 0.01775 0.01903 0.01982 0.55% Castro::initialize_do_advance() 10 0.009373 0.01677 0.01913 0.53% MultiFab::Saxpy() 20 0.01227 0.01516 0.01634 0.45% FabArray::setDomainBndry() 41 0.006014 0.01232 0.01548 0.43% VisMF::Write(FabArray) 2 0.01069 0.01141 0.01392 0.39% Gravity::get_new_grav_vector() 11 0.009827 0.01205 0.01318 0.37% MultiFab::contains_nan() 20 0.01061 0.01139 0.01281 0.36% Amr::writePlotFile() 2 0.009277 0.01187 0.01255 0.35% Castro::construct_old_gravity_source() 10 0.006202 0.01062 0.01217 0.34% Gravity::get_old_grav_vector() 10 0.006137 0.009808 0.0113 0.31% Castro::initialize_advance() 10 0.01027 0.01076 0.01092 0.30% Castro::initMFs() 1 0.005395 0.006363 0.008428 0.23% Castro::construct_new_source() 50 0.005208 0.006536 0.007123 0.20% Castro::enforce_min_density() 62 0.006114 0.006676 0.007089 0.20% StateData::define() 4 0.004431 0.005063 0.006513 0.18% main() 1 0.003373 0.005055 0.005468 0.15% Castro::swap_state_time_levels() 10 0.002984 0.003859 0.004016 0.11% Amr::coarseTimeStep() 10 0.0008481 0.001501 0.003024 0.08% Castro::buildMetrics() 1 0.001254 0.001477 0.001881 0.05% Castro::finalize_do_advance() 10 0.001104 0.00132 0.001469 0.04% Amr::timeStep() 10 0.0001671 0.0002337 0.0005141 0.01% Amr::InitAmr() 1 0.0002504 0.0003267 0.0004465 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002959 0.0003039 0.0003144 0.01% DistributionMapping::LeastUsedCPUs() 1 7.42e-06 0.0001536 0.0002344 0.01% Castro::clean_state() 62 0.0001488 0.0001617 0.0001763 0.00% StateDataPhysBCFunct::() 41 0.0001111 0.0001423 0.000162 0.00% Castro::enforce_consistent_e() 1 8.149e-05 8.921e-05 9.936e-05 0.00% Castro::construct_old_source() 50 3.597e-05 7.558e-05 9.666e-05 0.00% Amr::FinalizeInit() 1 3.824e-06 1.562e-05 9.379e-05 0.00% FabArray::ParallelCopy() 41 7.661e-05 8.51e-05 9.282e-05 0.00% Castro::Castro() 1 4.931e-05 5.981e-05 9.056e-05 0.00% Castro::do_old_sources() 10 4.088e-05 6.725e-05 8.39e-05 0.00% Castro::do_new_sources() 10 4.502e-05 6.711e-05 7.72e-05 0.00% FillPatchSingleLevel 41 6.132e-05 6.867e-05 7.552e-05 0.00% Amr::writeSmallPlotFile() 1 2.981e-05 5.02e-05 7.033e-05 0.00% Castro::subcycle_advance_ctu() 10 3.385e-05 5.068e-05 6.694e-05 0.00% Castro::construct_old_gravity() 10 3.332e-05 5.35e-05 6.654e-05 0.00% FabArrayBase::getCPC() 41 4.329e-05 5.261e-05 6.457e-05 0.00% Castro::apply_source_to_state() 20 3.746e-05 4.733e-05 6.151e-05 0.00% Castro::advance() 10 4.115e-05 4.582e-05 5.821e-05 0.00% Castro::finalize_advance() 10 4.602e-05 5.095e-05 5.483e-05 0.00% Castro::construct_new_gravity() 10 3.775e-05 4.542e-05 5.081e-05 0.00% Amr::defBaseLevel() 1 2.629e-05 3.144e-05 4.33e-05 0.00% Castro::post_timestep() 10 1.347e-05 2.35e-05 3.551e-05 0.00% FabArrayBase::CPC::define() 2 2.336e-05 2.642e-05 3.261e-05 0.00% Castro::enforce_speed_limit() 62 2.312e-05 2.708e-05 3.217e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.385e-05 1.854e-05 2.975e-05 0.00% Castro::check_for_nan() 20 2.033e-05 2.458e-05 2.753e-05 0.00% Gravity::swapTimeLevels() 10 7.297e-06 1.288e-05 2.38e-05 0.00% Amr::initSubcycle() 1 8.15e-06 1.009e-05 1.404e-05 0.00% Castro::create_source_corrector() 10 6.643e-06 1.064e-05 1.402e-05 0.00% Gravity::set_mass_offset() 10 7.292e-06 1.066e-05 1.364e-05 0.00% Castro::post_init() 1 7.499e-06 9.662e-06 1.177e-05 0.00% Castro::computeNewDt() 9 7.266e-06 9.335e-06 1.176e-05 0.00% Castro::FluxRegCrseInit 10 5.558e-06 9.165e-06 1.075e-05 0.00% Castro::retry_advance_ctu() 10 4.199e-06 5.54e-06 6.526e-06 0.00% Amr::InitializeInit() 1 2.158e-06 2.925e-06 6.169e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.574e-06 4.539e-06 5.409e-06 0.00% Castro::computeInitialDt() 2 3.184e-06 4.255e-06 4.713e-06 0.00% Castro::post_regrid() 1 1.856e-06 2.953e-06 4.082e-06 0.00% Amr::init() 1 1.838e-06 2.513e-06 3.54e-06 0.00% Castro::FluxRegFineAdd() 10 1.841e-06 2.224e-06 3.19e-06 0.00% Amr::initialInit() 1 1.24e-06 1.424e-06 1.825e-06 0.00% DistributionMapping::Distribute() 1 1.017e-06 1.299e-06 1.793e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.601 3.602 3.603 100.00% Amr::coarseTimeStep() 10 3.385 3.385 3.385 93.96% Amr::timeStep() 10 3.374 3.375 3.376 93.70% Castro::advance() 10 3.359 3.359 3.359 93.24% Castro::subcycle_advance_ctu() 10 3.284 3.286 3.29 91.32% Castro::do_advance_ctu() 10 3.284 3.286 3.29 91.32% Castro::construct_ctu_hydro_source() 10 2.056 2.35 2.452 68.05% Gravity::make_radial_gravity() 21 0.3376 0.353 0.3727 10.35% Gravity::get_new_grav_vector() 11 0.2302 0.2317 0.2329 6.47% Castro::construct_old_gravity() 10 0.198 0.2114 0.2252 6.25% Gravity::get_old_grav_vector() 10 0.1971 0.2105 0.2242 6.22% Castro::construct_new_gravity() 10 0.2066 0.2078 0.2089 5.80% FillPatchIterator::Initialize 41 0.1833 0.1907 0.2047 5.68% Amr::init() 1 0.2021 0.2022 0.2023 5.62% Amr::initialInit() 1 0.1883 0.1885 0.1887 5.24% Castro::initialize_do_advance() 10 0.1622 0.174 0.1832 5.08% FillPatchSingleLevel 41 0.1318 0.1458 0.1786 4.96% Amr::InitializeInit() 1 0.0564 0.102 0.1615 4.48% Amr::defBaseLevel() 1 0.0564 0.102 0.1615 4.48% Castro::initData() 1 0.04291 0.08677 0.1429 3.97% FabArray::ParallelCopy() 41 0.09003 0.104 0.1413 3.92% Castro::estTimeStep() 21 0.02865 0.08859 0.1345 3.73% Castro::expand_state() 10 0.1213 0.1269 0.1342 3.73% Amr::FinalizeInit() 1 0.02677 0.08656 0.1322 3.67% Castro::clean_state() 62 0.11 0.1163 0.119 3.30% FabArray::ParallelCopy_finish() 41 0.04132 0.05995 0.1107 3.07% Castro::computeInitialDt() 2 0.00161 0.0613 0.1068 2.97% Castro::initialize_advance() 10 0.06878 0.07256 0.07445 2.07% FabArray::setVal() 143 0.06843 0.07128 0.073 2.03% Castro::computeTemp() 63 0.06439 0.06902 0.0711 1.97% Castro::do_new_sources() 10 0.06506 0.06586 0.06679 1.85% Castro::reset_internal_energy(MultiFab) 63 0.04664 0.04999 0.05178 1.44% Castro::reset_internal_energy(Fab) 1008 0.04634 0.04969 0.05148 1.43% Castro::do_old_sources() 10 0.0373 0.04671 0.05 1.39% FabArray::ParallelCopy_nowait() 41 0.03053 0.04392 0.04933 1.37% StateDataPhysBCFunct::() 41 0.0359 0.04176 0.04588 1.27% StateData::FillBoundary(geom) 41 0.03577 0.04162 0.04576 1.27% Castro::normalize_species() 62 0.04027 0.0414 0.04231 1.17% Castro::construct_new_source() 50 0.02845 0.03093 0.03223 0.89% Gravity::interpolate_monopole_grav() 21 0.02615 0.02743 0.02798 0.78% Castro::construct_new_gravity_source() 10 0.02324 0.02439 0.02554 0.71% Castro::post_init() 1 0.02445 0.02459 0.02474 0.69% Amr::writePlotFile() 2 0.02313 0.02327 0.02348 0.65% Castro::post_timestep() 10 0.01467 0.0161 0.01669 0.46% Castro::apply_source_to_state() 20 0.01231 0.0152 0.01639 0.45% MultiFab::Saxpy() 20 0.01227 0.01516 0.01634 0.45% FabArray::setDomainBndry() 41 0.006014 0.01232 0.01548 0.43% VisMF::Write(FabArray) 2 0.01069 0.01141 0.01392 0.39% Castro::check_for_nan() 20 0.01063 0.01141 0.01283 0.36% MultiFab::contains_nan() 20 0.01061 0.01139 0.01281 0.36% Castro::construct_old_source() 50 0.006238 0.0107 0.01226 0.34% Castro::construct_old_gravity_source() 10 0.006202 0.01062 0.01217 0.34% Castro::Castro() 1 0.00889 0.009925 0.01211 0.34% Castro::initMFs() 1 0.005395 0.006363 0.008428 0.23% Castro::computeNewDt() 9 0.007333 0.007346 0.007356 0.20% Castro::enforce_min_density() 62 0.006114 0.006676 0.007089 0.20% AmrLevel::AmrLevel(dm) 1 0.004447 0.005081 0.006532 0.18% StateData::define() 4 0.004431 0.005063 0.006513 0.18% Castro::swap_state_time_levels() 10 0.002984 0.003859 0.004016 0.11% Castro::buildMetrics() 1 0.001367 0.001619 0.002075 0.06% Castro::post_regrid() 1 0.001512 0.001585 0.001646 0.05% Castro::finalize_do_advance() 10 0.001104 0.00132 0.001469 0.04% Amr::InitAmr() 1 0.0002593 0.0003368 0.00046 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.272e-05 0.0001594 0.000241 0.01% DistributionMapping::LeastUsedCPUs() 1 7.42e-06 0.0001536 0.0002344 0.01% Castro::enforce_consistent_e() 1 8.149e-05 8.921e-05 9.936e-05 0.00% FabArrayBase::getCPC() 41 6.916e-05 7.903e-05 9.272e-05 0.00% Amr::writeSmallPlotFile() 1 2.981e-05 5.02e-05 7.033e-05 0.00% Castro::finalize_advance() 10 5.366e-05 6.234e-05 6.688e-05 0.00% FabArrayBase::CPC::define() 2 2.336e-05 2.642e-05 3.261e-05 0.00% Castro::enforce_speed_limit() 62 2.312e-05 2.708e-05 3.217e-05 0.00% Gravity::swapTimeLevels() 10 7.297e-06 1.288e-05 2.38e-05 0.00% Amr::initSubcycle() 1 8.15e-06 1.009e-05 1.404e-05 0.00% Castro::create_source_corrector() 10 6.643e-06 1.064e-05 1.402e-05 0.00% Gravity::set_mass_offset() 10 7.292e-06 1.066e-05 1.364e-05 0.00% Castro::FluxRegCrseInit 10 5.558e-06 9.165e-06 1.075e-05 0.00% Castro::retry_advance_ctu() 10 4.199e-06 5.54e-06 6.526e-06 0.00% Castro::FluxRegFineAdd() 10 1.841e-06 2.224e-06 3.19e-06 0.00% DistributionMapping::Distribute() 1 1.017e-06 1.299e-06 1.793e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.06-31-gcd166dda59b8) finalized