MPI initialized with 8 MPI processes
MPI initialized with thread support level 3
AMReX (22.06-33-g6f72de283c38) initialized
Starting run at 05:38:40 UTC on 2022-06-16.
Successfully read inputs file ...
Castro git describe: 22.06-12-g556652b03
AMReX git describe: 22.06-33-g6f72de283
Microphysics git describe: 22.06-2-g35a553f4
reading extern runtime parameters ...
3 Species:
C12 O16 Mg24
Successfully read inputs file ...
INITIAL GRIDS
Level 0 8 grids 262144 cells 100 % of domain
smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32
PLOTFILE: file = dustcollapse-3d-monopole_plt00000
Write plotfile time = 0.013440701 seconds
[Level 0 step 1] ADVANCE with dt = 4.541742215e-05
[Level 0 step 1] Advanced 262144 cells
[STEP 1] Coarse TimeStep time: 0.349103655
[STEP 1] FAB kilobyte spread across MPI nodes: [58394 ... 58394]
STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05
[Level 0 step 2] ADVANCE with dt = 4.768829326e-05
[Level 0 step 2] Advanced 262144 cells
[STEP 2] Coarse TimeStep time: 0.339333489
[STEP 2] FAB kilobyte spread across MPI nodes: [58394 ... 58394]
STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05
[Level 0 step 3] ADVANCE with dt = 5.007270792e-05
[Level 0 step 3] Advanced 262144 cells
[STEP 3] Coarse TimeStep time: 0.338390025
[STEP 3] FAB kilobyte spread across MPI nodes: [58394 ... 58394]
STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05
[Level 0 step 4] ADVANCE with dt = 5.257634331e-05
[Level 0 step 4] Advanced 262144 cells
[STEP 4] Coarse TimeStep time: 0.33878414
[STEP 4] FAB kilobyte spread across MPI nodes: [58394 ... 58394]
STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05
[Level 0 step 5] ADVANCE with dt = 5.520516048e-05
[Level 0 step 5] Advanced 262144 cells
[STEP 5] Coarse TimeStep time: 0.339086351
[STEP 5] FAB kilobyte spread across MPI nodes: [58394 ... 58394]
STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05
[Level 0 step 6] ADVANCE with dt = 5.79654185e-05
[Level 0 step 6] Advanced 262144 cells
[STEP 6] Coarse TimeStep time: 0.380960855
[STEP 6] FAB kilobyte spread across MPI nodes: [58394 ... 58394]
STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05
[Level 0 step 7] ADVANCE with dt = 6.086368943e-05
[Level 0 step 7] Advanced 262144 cells
[STEP 7] Coarse TimeStep time: 0.341877527
[STEP 7] FAB kilobyte spread across MPI nodes: [58394 ... 58394]
STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05
[Level 0 step 8] ADVANCE with dt = 6.39068739e-05
[Level 0 step 8] Advanced 262144 cells
[STEP 8] Coarse TimeStep time: 0.350131318
[STEP 8] FAB kilobyte spread across MPI nodes: [58394 ... 58394]
STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05
[Level 0 step 9] ADVANCE with dt = 6.71022176e-05
[Level 0 step 9] Advanced 262144 cells
[STEP 9] Coarse TimeStep time: 0.354828852
[STEP 9] FAB kilobyte spread across MPI nodes: [58394 ... 58394]
STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05
[Level 0 step 10] ADVANCE with dt = 7.045732848e-05
[Level 0 step 10] Advanced 262144 cells
[STEP 10] Coarse TimeStep time: 0.34734614
[STEP 10] FAB kilobyte spread across MPI nodes: [58394 ... 58394]
STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05
PLOTFILE: file = dustcollapse-3d-monopole_plt00010
Write plotfile time = 0.009993713 seconds
Ending run at 05:38:43 UTC on 2022-06-16.
Run time = 3.670815894
Run time without initialization = 3.496646696
Average number of zones advanced per microsecond: 0.750
Average number of zones advanced per microsecond per rank: 0.094
TinyProfiler total time across processes [min...avg...max]: 3.668 ... 3.67 ... 3.671
-------------------------------------------------------------------------------------------
Name NCalls Excl. Min Excl. Avg Excl. Max Max %
-------------------------------------------------------------------------------------------
Castro::construct_ctu_hydro_source() 10 2.0684 2.3861 2.5161 68.54%
Castro::do_advance_ctu() 10 0.07211 0.2038 0.5242 14.28%
Gravity::make_radial_gravity() 21 0.3453 0.359 0.3911 10.65%
FabArray::ParallelCopy_finish() 41 0.03508 0.05601 0.1268 3.45%
Castro::initData() 1 0.03803 0.07652 0.1143 3.11%
Castro::estTimeStep() 21 0.02364 0.06185 0.113 3.08%
FabArray::setVal() 143 0.05018 0.06884 0.07525 2.05%
Castro::reset_internal_energy(Fab) 1008 0.04601 0.04979 0.05172 1.41%
FabArray::ParallelCopy_nowait() 41 0.0249 0.04348 0.04964 1.35%
StateData::FillBoundary(geom) 41 0.03439 0.04191 0.0471 1.28%
Castro::normalize_species() 62 0.04108 0.04194 0.04332 1.18%
FillPatchIterator::Initialize 41 0.01948 0.0321 0.03676 1.00%
Gravity::interpolate_monopole_grav() 21 0.02724 0.02781 0.02802 0.76%
Castro::construct_new_gravity_source() 10 0.0181 0.02304 0.02438 0.66%
Castro::expand_state() 10 0.009392 0.01992 0.02349 0.64%
Castro::computeTemp() 63 0.0173 0.01898 0.02019 0.55%
Castro::initialize_do_advance() 10 0.008268 0.01621 0.01829 0.50%
VisMF::Write(FabArray) 2 0.01212 0.01284 0.01685 0.46%
MultiFab::Saxpy() 20 0.008425 0.01437 0.01674 0.46%
FabArray::setDomainBndry() 41 0.006121 0.01213 0.0153 0.42%
MultiFab::contains_nan() 20 0.009788 0.01153 0.01393 0.38%
Gravity::get_new_grav_vector() 11 0.008979 0.01155 0.01292 0.35%
Castro::construct_old_gravity_source() 10 0.00487 0.009997 0.01184 0.32%
Amr::writePlotFile() 2 0.006812 0.01091 0.01175 0.32%
Gravity::get_old_grav_vector() 10 0.005406 0.009718 0.01129 0.31%
Castro::initialize_advance() 10 0.006781 0.01024 0.01103 0.30%
Castro::enforce_min_density() 62 0.005885 0.006659 0.007138 0.19%
Castro::construct_new_source() 50 0.00468 0.006464 0.007127 0.19%
main() 1 0.003592 0.005541 0.006078 0.17%
Castro::initMFs() 1 0.005453 0.005477 0.005518 0.15%
StateData::define() 4 0.004499 0.004529 0.004545 0.12%
Castro::swap_state_time_levels() 10 0.001687 0.003629 0.003969 0.11%
Amr::coarseTimeStep() 10 0.001373 0.002475 0.003102 0.08%
Castro::finalize_do_advance() 10 0.0005329 0.001182 0.001432 0.04%
Castro::buildMetrics() 1 0.001291 0.001305 0.001322 0.04%
Amr::timeStep() 10 0.0001604 0.0002147 0.0004529 0.01%
Amr::InitAmr() 1 0.0002702 0.0002881 0.0003765 0.01%
Castro::reset_internal_energy(MultiFab) 63 0.0002815 0.0003076 0.0003334 0.01%
Castro::clean_state() 62 0.0001148 0.0001636 0.0001913 0.01%
StateDataPhysBCFunct::() 41 8.908e-05 0.0001437 0.0001892 0.01%
FabArray::ParallelCopy() 41 5.941e-05 8.463e-05 0.0001232 0.00%
DistributionMapping::LeastUsedCPUs() 1 7.557e-06 9.571e-05 0.0001116 0.00%
Castro::construct_old_source() 50 2.98e-05 7.278e-05 0.0001003 0.00%
Castro::enforce_consistent_e() 1 7.703e-05 8.597e-05 9.487e-05 0.00%
Castro::Castro() 1 5.647e-05 7.027e-05 9.311e-05 0.00%
Castro::do_old_sources() 10 3.267e-05 6.577e-05 8.184e-05 0.00%
Castro::subcycle_advance_ctu() 10 2.822e-05 5.035e-05 8.163e-05 0.00%
Castro::do_new_sources() 10 3.507e-05 6.502e-05 8.037e-05 0.00%
Amr::FinalizeInit() 1 3.67e-06 1.358e-05 7.779e-05 0.00%
FillPatchSingleLevel 41 4.997e-05 6.549e-05 7.521e-05 0.00%
Amr::writeSmallPlotFile() 1 2.356e-05 4.764e-05 6.953e-05 0.00%
Castro::construct_old_gravity() 10 3.058e-05 5.362e-05 6.744e-05 0.00%
FabArrayBase::getCPC() 41 3.654e-05 4.927e-05 6.059e-05 0.00%
Castro::finalize_advance() 10 4.221e-05 5.142e-05 5.831e-05 0.00%
Castro::apply_source_to_state() 20 2.483e-05 4.667e-05 5.812e-05 0.00%
Amr::defBaseLevel() 1 2.643e-05 3.764e-05 5.406e-05 0.00%
Castro::construct_new_gravity() 10 3.413e-05 4.437e-05 5.131e-05 0.00%
Castro::advance() 10 2.695e-05 3.889e-05 4.631e-05 0.00%
Castro::post_timestep() 10 1.21e-05 2.529e-05 4.48e-05 0.00%
Castro::check_for_nan() 20 1.962e-05 2.593e-05 3.307e-05 0.00%
FabArrayBase::CPC::define() 2 2.259e-05 2.535e-05 3.072e-05 0.00%
Castro::enforce_speed_limit() 62 2.019e-05 2.514e-05 2.912e-05 0.00%
AmrLevel::AmrLevel(dm) 1 1.447e-05 1.753e-05 2.295e-05 0.00%
Gravity::swapTimeLevels() 10 4.769e-06 1.159e-05 1.543e-05 0.00%
Castro::create_source_corrector() 10 5.729e-06 1.05e-05 1.406e-05 0.00%
Castro::post_init() 1 8.053e-06 1.024e-05 1.273e-05 0.00%
Gravity::set_mass_offset() 10 6.838e-06 1.039e-05 1.27e-05 0.00%
Castro::FluxRegCrseInit 10 6.616e-06 9.257e-06 1.244e-05 0.00%
Castro::computeNewDt() 9 7.174e-06 9.948e-06 1.162e-05 0.00%
Amr::initSubcycle() 1 8.192e-06 8.514e-06 9.259e-06 0.00%
Castro::retry_advance_ctu() 10 3.797e-06 5.594e-06 6.384e-06 0.00%
DistributionMapping::SFCProcessorMapDoIt() 1 3.599e-06 4.254e-06 6.374e-06 0.00%
Amr::InitializeInit() 1 2.001e-06 2.597e-06 5.601e-06 0.00%
Castro::post_regrid() 1 1.931e-06 3.357e-06 5.522e-06 0.00%
Castro::computeInitialDt() 2 3.771e-06 4.538e-06 5.083e-06 0.00%
Amr::init() 1 1.938e-06 2.323e-06 3.052e-06 0.00%
Castro::FluxRegFineAdd() 10 1.978e-06 2.261e-06 2.97e-06 0.00%
Amr::initialInit() 1 1.126e-06 1.34e-06 1.455e-06 0.00%
DistributionMapping::Distribute() 1 1.131e-06 1.244e-06 1.338e-06 0.00%
-------------------------------------------------------------------------------------------
-------------------------------------------------------------------------------------------
Name NCalls Incl. Min Incl. Avg Incl. Max Max %
-------------------------------------------------------------------------------------------
main() 1 3.668 3.67 3.671 100.00%
Amr::coarseTimeStep() 10 3.481 3.481 3.481 94.82%
Amr::timeStep() 10 3.469 3.47 3.471 94.55%
Castro::advance() 10 3.453 3.453 3.454 94.08%
Castro::subcycle_advance_ctu() 10 3.375 3.383 3.401 92.66%
Castro::do_advance_ctu() 10 3.375 3.383 3.401 92.66%
Castro::construct_ctu_hydro_source() 10 2.068 2.386 2.516 68.54%
Gravity::make_radial_gravity() 21 0.3453 0.359 0.3911 10.65%
Castro::construct_old_gravity() 10 0.2064 0.2178 0.243 6.62%
Gravity::get_old_grav_vector() 10 0.2056 0.217 0.2425 6.61%
Gravity::get_new_grav_vector() 11 0.2306 0.2322 0.2337 6.37%
FillPatchIterator::Initialize 41 0.1766 0.186 0.212 5.78%
Castro::construct_new_gravity() 10 0.2064 0.2083 0.21 5.72%
FillPatchSingleLevel 41 0.1259 0.1418 0.1863 5.08%
Castro::initialize_do_advance() 10 0.1637 0.1692 0.1739 4.74%
Amr::init() 1 0.1736 0.1737 0.1738 4.73%
Amr::initialInit() 1 0.1598 0.1601 0.1603 4.37%
FabArray::ParallelCopy() 41 0.08336 0.09965 0.1518 4.14%
Amr::InitializeInit() 1 0.0569 0.0953 0.1331 3.63%
Amr::defBaseLevel() 1 0.0569 0.0953 0.1331 3.63%
FabArray::ParallelCopy_finish() 41 0.03508 0.05601 0.1268 3.45%
Castro::expand_state() 10 0.116 0.1223 0.1265 3.45%
Castro::clean_state() 62 0.1109 0.1169 0.1214 3.31%
Castro::initData() 1 0.04213 0.08062 0.1185 3.23%
Castro::estTimeStep() 21 0.02364 0.06185 0.113 3.08%
Amr::FinalizeInit() 1 0.02719 0.06475 0.1031 2.81%
Castro::computeInitialDt() 2 0.001673 0.03946 0.07789 2.12%
Castro::initialize_advance() 10 0.05114 0.06979 0.07774 2.12%
FabArray::setVal() 143 0.05018 0.06884 0.07525 2.05%
Castro::computeTemp() 63 0.06359 0.06908 0.07223 1.97%
Castro::do_new_sources() 10 0.05067 0.06255 0.06567 1.79%
Castro::reset_internal_energy(MultiFab) 63 0.04629 0.0501 0.05204 1.42%
Castro::reset_internal_energy(Fab) 1008 0.04601 0.04979 0.05172 1.41%
FabArray::ParallelCopy_nowait() 41 0.02496 0.04356 0.04972 1.35%
Castro::do_old_sources() 10 0.03188 0.04571 0.04959 1.35%
StateDataPhysBCFunct::() 41 0.03448 0.04205 0.04727 1.29%
StateData::FillBoundary(geom) 41 0.03439 0.04191 0.0471 1.28%
Castro::normalize_species() 62 0.04108 0.04194 0.04332 1.18%
Castro::construct_new_source() 50 0.02278 0.0295 0.03139 0.86%
Gravity::interpolate_monopole_grav() 21 0.02724 0.02781 0.02802 0.76%
Castro::post_init() 1 0.0243 0.02458 0.02487 0.68%
Castro::construct_new_gravity_source() 10 0.0181 0.02304 0.02438 0.66%
Amr::writePlotFile() 2 0.02351 0.02374 0.02403 0.65%
Castro::post_timestep() 10 0.01572 0.01604 0.01724 0.47%
VisMF::Write(FabArray) 2 0.01212 0.01284 0.01685 0.46%
Castro::apply_source_to_state() 20 0.00845 0.01442 0.01679 0.46%
MultiFab::Saxpy() 20 0.008425 0.01437 0.01674 0.46%
FabArray::setDomainBndry() 41 0.006121 0.01213 0.0153 0.42%
Castro::check_for_nan() 20 0.009808 0.01155 0.01395 0.38%
MultiFab::contains_nan() 20 0.009788 0.01153 0.01393 0.38%
Castro::construct_old_source() 50 0.0049 0.01007 0.01192 0.32%
Castro::construct_old_gravity_source() 10 0.00487 0.009997 0.01184 0.32%
Castro::Castro() 1 0.009892 0.009996 0.01008 0.27%
Castro::computeNewDt() 9 0.007638 0.007651 0.007659 0.21%
Castro::enforce_min_density() 62 0.005885 0.006659 0.007138 0.19%
Castro::initMFs() 1 0.005453 0.005477 0.005518 0.15%
AmrLevel::AmrLevel(dm) 1 0.004522 0.004546 0.004565 0.12%
StateData::define() 4 0.004499 0.004529 0.004545 0.12%
Castro::swap_state_time_levels() 10 0.001687 0.003629 0.003969 0.11%
Castro::post_regrid() 1 0.00152 0.001589 0.001649 0.04%
Castro::buildMetrics() 1 0.001413 0.001441 0.001455 0.04%
Castro::finalize_do_advance() 10 0.0005329 0.001182 0.001432 0.04%
Amr::InitAmr() 1 0.0002787 0.0002966 0.0003848 0.01%
DistributionMapping::SFCProcessorMapDoIt() 1 1.242e-05 0.0001012 0.000118 0.00%
DistributionMapping::LeastUsedCPUs() 1 7.557e-06 9.571e-05 0.0001116 0.00%
Castro::enforce_consistent_e() 1 7.703e-05 8.597e-05 9.487e-05 0.00%
FabArrayBase::getCPC() 41 6.097e-05 7.461e-05 8.618e-05 0.00%
Castro::finalize_advance() 10 5.104e-05 6.294e-05 7.047e-05 0.00%
Amr::writeSmallPlotFile() 1 2.356e-05 4.764e-05 6.953e-05 0.00%
FabArrayBase::CPC::define() 2 2.259e-05 2.535e-05 3.072e-05 0.00%
Castro::enforce_speed_limit() 62 2.019e-05 2.514e-05 2.912e-05 0.00%
Gravity::swapTimeLevels() 10 4.769e-06 1.159e-05 1.543e-05 0.00%
Castro::create_source_corrector() 10 5.729e-06 1.05e-05 1.406e-05 0.00%
Gravity::set_mass_offset() 10 6.838e-06 1.039e-05 1.27e-05 0.00%
Castro::FluxRegCrseInit 10 6.616e-06 9.257e-06 1.244e-05 0.00%
Amr::initSubcycle() 1 8.192e-06 8.514e-06 9.259e-06 0.00%
Castro::retry_advance_ctu() 10 3.797e-06 5.594e-06 6.384e-06 0.00%
Castro::FluxRegFineAdd() 10 1.978e-06 2.261e-06 2.97e-06 0.00%
DistributionMapping::Distribute() 1 1.131e-06 1.244e-06 1.338e-06 0.00%
-------------------------------------------------------------------------------------------
Unused ParmParse Variables:
[TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2]
[TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2]
AMReX (22.06-33-g6f72de283c38) finalized