MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.06-35-g3ba934070e89) initialized Starting run at 05:38:04 UTC on 2022-06-20. Successfully read inputs file ... Castro git describe: 22.06-12-g556652b03 AMReX git describe: 22.06-35-g3ba934070 Microphysics git describe: 22.06-4-gef2eb86c reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.013499166 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.351758833 [STEP 1] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.336691453 [STEP 2] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.337949585 [STEP 3] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.338140924 [STEP 4] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.347966925 [STEP 5] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.343655411 [STEP 6] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.332348687 [STEP 7] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.33306323 [STEP 8] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.333575391 [STEP 9] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.333300452 [STEP 10] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.00970507 seconds Ending run at 05:38:07 UTC on 2022-06-20. Run time = 3.593860483 Run time without initialization = 3.404431212 Average number of zones advanced per microsecond: 0.770 Average number of zones advanced per microsecond per rank: 0.096 TinyProfiler total time across processes [min...avg...max]: 3.592 ... 3.594 ... 3.594 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 1.9905 2.3511 2.4654 68.60% Castro::do_advance_ctu() 10 0.03192 0.1478 0.5112 14.22% Gravity::make_radial_gravity() 21 0.3389 0.3529 0.3844 10.70% FabArray::ParallelCopy_finish() 41 0.03986 0.06173 0.1287 3.58% Castro::initData() 1 0.03871 0.08187 0.1249 3.48% Castro::estTimeStep() 21 0.02966 0.07743 0.1191 3.31% FabArray::setVal() 143 0.05633 0.06786 0.07105 1.98% Castro::reset_internal_energy(Fab) 1008 0.04521 0.04957 0.05142 1.43% FabArray::ParallelCopy_nowait() 41 0.0249 0.04297 0.04862 1.35% StateData::FillBoundary(geom) 41 0.0344 0.0423 0.04718 1.31% Castro::normalize_species() 62 0.03878 0.04134 0.04325 1.20% FillPatchIterator::Initialize 41 0.01903 0.03191 0.03634 1.01% Gravity::interpolate_monopole_grav() 21 0.02557 0.02747 0.02856 0.79% Castro::construct_new_gravity_source() 10 0.01964 0.02328 0.02516 0.70% Castro::expand_state() 10 0.009167 0.0185 0.02226 0.62% Castro::computeTemp() 63 0.01748 0.01891 0.01952 0.54% Castro::initialize_do_advance() 10 0.008249 0.01624 0.01794 0.50% VisMF::Write(FabArray) 2 0.01144 0.01244 0.01649 0.46% MultiFab::Saxpy() 20 0.008512 0.01424 0.01614 0.45% FabArray::setDomainBndry() 41 0.006057 0.01201 0.01586 0.44% Gravity::get_new_grav_vector() 11 0.007143 0.01126 0.01292 0.36% MultiFab::contains_nan() 20 0.009596 0.01091 0.01188 0.33% Castro::construct_old_gravity_source() 10 0.004989 0.01001 0.01174 0.33% Amr::writePlotFile() 2 0.006941 0.01072 0.01156 0.32% Gravity::get_old_grav_vector() 10 0.005319 0.009368 0.01082 0.30% Castro::initialize_advance() 10 0.006966 0.009944 0.01051 0.29% Castro::initMFs() 1 0.005462 0.006453 0.008657 0.24% Castro::construct_new_source() 50 0.004662 0.006385 0.006954 0.19% StateData::define() 4 0.004503 0.005121 0.006539 0.18% Castro::enforce_min_density() 62 0.005058 0.006031 0.006523 0.18% main() 1 0.003447 0.005167 0.005546 0.15% Castro::swap_state_time_levels() 10 0.001665 0.003671 0.003971 0.11% Amr::coarseTimeStep() 10 0.0009825 0.001305 0.002216 0.06% Castro::buildMetrics() 1 0.001316 0.001482 0.001874 0.05% Castro::finalize_do_advance() 10 0.0004744 0.001161 0.001425 0.04% Amr::InitAmr() 1 0.0002611 0.0003266 0.0005924 0.02% Amr::timeStep() 10 0.0001739 0.0002331 0.0004785 0.01% DistributionMapping::LeastUsedCPUs() 1 1.291e-05 0.0003367 0.0004117 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002971 0.0003098 0.0003214 0.01% StateDataPhysBCFunct::() 41 0.000108 0.0001406 0.0001787 0.00% Castro::clean_state() 62 0.0001305 0.0001558 0.0001698 0.00% FabArray::ParallelCopy() 41 6.549e-05 8.491e-05 9.971e-05 0.00% Castro::enforce_consistent_e() 1 8.215e-05 8.842e-05 9.502e-05 0.00% Castro::construct_old_source() 50 3.431e-05 7.499e-05 9.433e-05 0.00% Amr::writeSmallPlotFile() 1 2.42e-05 5.062e-05 8.505e-05 0.00% FillPatchSingleLevel 41 5.629e-05 6.864e-05 8.142e-05 0.00% Castro::do_old_sources() 10 3.459e-05 6.602e-05 7.898e-05 0.00% Castro::do_new_sources() 10 4.191e-05 6.449e-05 7.815e-05 0.00% Castro::Castro() 1 5.005e-05 6.295e-05 7.6e-05 0.00% Castro::advance() 10 2.504e-05 4.506e-05 6.966e-05 0.00% Amr::FinalizeInit() 1 3.7e-06 1.225e-05 6.625e-05 0.00% Castro::construct_old_gravity() 10 3.515e-05 5.222e-05 6.353e-05 0.00% Castro::subcycle_advance_ctu() 10 3.145e-05 5.013e-05 6.166e-05 0.00% Castro::apply_source_to_state() 20 2.653e-05 4.951e-05 5.938e-05 0.00% Castro::finalize_advance() 10 4.805e-05 5.11e-05 5.436e-05 0.00% FabArrayBase::getCPC() 41 3.998e-05 4.684e-05 5.131e-05 0.00% Castro::construct_new_gravity() 10 4.058e-05 4.48e-05 5.011e-05 0.00% Amr::defBaseLevel() 1 2.658e-05 3.656e-05 4.242e-05 0.00% Castro::post_timestep() 10 1.283e-05 2.186e-05 3.432e-05 0.00% FabArrayBase::CPC::define() 2 2.223e-05 2.57e-05 3.349e-05 0.00% Castro::enforce_speed_limit() 62 1.899e-05 2.541e-05 3.136e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.237e-05 1.773e-05 2.821e-05 0.00% Castro::check_for_nan() 20 2.07e-05 2.394e-05 2.666e-05 0.00% Castro::create_source_corrector() 10 6.091e-06 1.152e-05 1.694e-05 0.00% Gravity::swapTimeLevels() 10 5.61e-06 1.236e-05 1.632e-05 0.00% Gravity::set_mass_offset() 10 6.954e-06 1.044e-05 1.49e-05 0.00% Castro::post_init() 1 7.994e-06 1.009e-05 1.446e-05 0.00% Amr::initSubcycle() 1 7.915e-06 9.637e-06 1.387e-05 0.00% Castro::computeNewDt() 9 8.178e-06 9.291e-06 1.179e-05 0.00% Castro::FluxRegCrseInit 10 6.527e-06 8.817e-06 1.129e-05 0.00% Amr::InitializeInit() 1 1.837e-06 3.389e-06 1.042e-05 0.00% Castro::retry_advance_ctu() 10 4.448e-06 5.945e-06 7.411e-06 0.00% Amr::init() 1 1.842e-06 2.816e-06 6.524e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.784e-06 4.819e-06 6.067e-06 0.00% Castro::computeInitialDt() 2 2.989e-06 3.835e-06 4.641e-06 0.00% Castro::post_regrid() 1 1.756e-06 3.037e-06 4.211e-06 0.00% Castro::FluxRegFineAdd() 10 1.804e-06 2.13e-06 2.694e-06 0.00% DistributionMapping::Distribute() 1 8.67e-07 1.176e-06 1.866e-06 0.00% Amr::initialInit() 1 1.218e-06 1.458e-06 1.658e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.592 3.594 3.594 100.00% Amr::coarseTimeStep() 10 3.389 3.389 3.389 94.31% Amr::timeStep() 10 3.379 3.38 3.38 94.06% Castro::advance() 10 3.363 3.364 3.364 93.61% Castro::subcycle_advance_ctu() 10 3.291 3.294 3.305 91.95% Castro::do_advance_ctu() 10 3.291 3.294 3.305 91.95% Castro::construct_ctu_hydro_source() 10 1.991 2.351 2.465 68.60% Gravity::make_radial_gravity() 21 0.3389 0.3529 0.3844 10.70% Castro::construct_old_gravity() 10 0.1992 0.2109 0.2349 6.53% Gravity::get_old_grav_vector() 10 0.1983 0.2101 0.2344 6.52% Gravity::get_new_grav_vector() 11 0.2299 0.2318 0.2337 6.50% FillPatchIterator::Initialize 41 0.1817 0.1913 0.2134 5.94% Castro::construct_new_gravity() 10 0.2056 0.2072 0.2091 5.82% Amr::init() 1 0.1886 0.189 0.189 5.26% FillPatchSingleLevel 41 0.1303 0.1474 0.1883 5.24% Castro::initialize_do_advance() 10 0.1606 0.1728 0.1808 5.03% Amr::initialInit() 1 0.175 0.1756 0.1758 4.89% FabArray::ParallelCopy() 41 0.08715 0.1049 0.1537 4.28% Amr::InitializeInit() 1 0.05699 0.1014 0.1478 4.11% Amr::defBaseLevel() 1 0.05699 0.1014 0.1478 4.11% Castro::expand_state() 10 0.1206 0.1263 0.132 3.67% FabArray::ParallelCopy_finish() 41 0.03986 0.06173 0.1287 3.58% Castro::initData() 1 0.04286 0.08579 0.1287 3.58% Castro::estTimeStep() 21 0.02966 0.07743 0.1191 3.31% Amr::FinalizeInit() 1 0.02761 0.07418 0.1187 3.30% Castro::clean_state() 62 0.1059 0.1154 0.1182 3.29% Castro::computeInitialDt() 2 0.001741 0.04826 0.09274 2.58% Castro::initialize_advance() 10 0.05844 0.06991 0.07261 2.02% FabArray::setVal() 143 0.05633 0.06786 0.07105 1.98% Castro::computeTemp() 63 0.06299 0.06879 0.07104 1.98% Castro::do_new_sources() 10 0.05181 0.0627 0.06524 1.82% Castro::reset_internal_energy(MultiFab) 63 0.04551 0.04988 0.05173 1.44% Castro::reset_internal_energy(Fab) 1008 0.04521 0.04957 0.05142 1.43% FabArray::ParallelCopy_nowait() 41 0.02496 0.04305 0.0487 1.35% Castro::do_old_sources() 10 0.03143 0.0449 0.04857 1.35% StateDataPhysBCFunct::() 41 0.03451 0.04244 0.04736 1.32% StateData::FillBoundary(geom) 41 0.0344 0.0423 0.04718 1.31% Castro::normalize_species() 62 0.03878 0.04134 0.04325 1.20% Castro::construct_new_source() 50 0.0243 0.02966 0.03204 0.89% Gravity::interpolate_monopole_grav() 21 0.02557 0.02747 0.02856 0.79% Castro::post_init() 1 0.02486 0.02526 0.02544 0.71% Castro::construct_new_gravity_source() 10 0.01964 0.02328 0.02516 0.70% Amr::writePlotFile() 2 0.023 0.02317 0.02343 0.65% VisMF::Write(FabArray) 2 0.01144 0.01244 0.01649 0.46% Castro::apply_source_to_state() 20 0.008539 0.01429 0.0162 0.45% MultiFab::Saxpy() 20 0.008512 0.01424 0.01614 0.45% Castro::post_timestep() 10 0.01549 0.01587 0.01614 0.45% FabArray::setDomainBndry() 41 0.006057 0.01201 0.01586 0.44% Castro::Castro() 1 0.009067 0.01009 0.01231 0.34% Castro::check_for_nan() 20 0.009618 0.01094 0.01191 0.33% MultiFab::contains_nan() 20 0.009596 0.01091 0.01188 0.33% Castro::construct_old_source() 50 0.005023 0.01009 0.01184 0.33% Castro::construct_old_gravity_source() 10 0.004989 0.01001 0.01174 0.33% Castro::initMFs() 1 0.005462 0.006453 0.008657 0.24% Castro::computeNewDt() 9 0.006999 0.007033 0.00705 0.20% AmrLevel::AmrLevel(dm) 1 0.004516 0.005139 0.006556 0.18% StateData::define() 4 0.004503 0.005121 0.006539 0.18% Castro::enforce_min_density() 62 0.005058 0.006031 0.006523 0.18% Castro::swap_state_time_levels() 10 0.001665 0.003671 0.003971 0.11% Castro::buildMetrics() 1 0.001435 0.001627 0.002081 0.06% Castro::post_regrid() 1 0.00151 0.001563 0.001647 0.05% Castro::finalize_do_advance() 10 0.0004744 0.001161 0.001425 0.04% Amr::InitAmr() 1 0.0002697 0.0003362 0.0006057 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.891e-05 0.0003427 0.0004189 0.01% DistributionMapping::LeastUsedCPUs() 1 1.291e-05 0.0003367 0.0004117 0.01% Castro::enforce_consistent_e() 1 8.215e-05 8.842e-05 9.502e-05 0.00% Amr::writeSmallPlotFile() 1 2.42e-05 5.062e-05 8.505e-05 0.00% FabArrayBase::getCPC() 41 6.511e-05 7.254e-05 8.195e-05 0.00% Castro::finalize_advance() 10 5.721e-05 6.205e-05 6.677e-05 0.00% FabArrayBase::CPC::define() 2 2.223e-05 2.57e-05 3.349e-05 0.00% Castro::enforce_speed_limit() 62 1.899e-05 2.541e-05 3.136e-05 0.00% Castro::create_source_corrector() 10 6.091e-06 1.152e-05 1.694e-05 0.00% Gravity::swapTimeLevels() 10 5.61e-06 1.236e-05 1.632e-05 0.00% Gravity::set_mass_offset() 10 6.954e-06 1.044e-05 1.49e-05 0.00% Amr::initSubcycle() 1 7.915e-06 9.637e-06 1.387e-05 0.00% Castro::FluxRegCrseInit 10 6.527e-06 8.817e-06 1.129e-05 0.00% Castro::retry_advance_ctu() 10 4.448e-06 5.945e-06 7.411e-06 0.00% Castro::FluxRegFineAdd() 10 1.804e-06 2.13e-06 2.694e-06 0.00% DistributionMapping::Distribute() 1 8.67e-07 1.176e-06 1.866e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.06-35-g3ba934070e89) finalized