MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.06-36-g478fd8a4ac98) initialized Starting run at 05:38:10 UTC on 2022-06-21. Successfully read inputs file ... Castro git describe: 22.06-12-g556652b03 AMReX git describe: 22.06-36-g478fd8a4a Microphysics git describe: 22.06-4-gef2eb86c reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015215425 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.350716116 [STEP 1] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.339249505 [STEP 2] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.337537399 [STEP 3] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.339865284 [STEP 4] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.338464626 [STEP 5] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.342398263 [STEP 6] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.334680053 [STEP 7] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.333661416 [STEP 8] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.334373667 [STEP 9] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.334835252 [STEP 10] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009511828 seconds Ending run at 05:38:14 UTC on 2022-06-21. Run time = 3.58338146 Run time without initialization = 3.401593924 Average number of zones advanced per microsecond: 0.771 Average number of zones advanced per microsecond per rank: 0.096 TinyProfiler total time across processes [min...avg...max]: 3.581 ... 3.583 ... 3.583 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.0921 2.3664 2.4730 69.01% Castro::do_advance_ctu() 10 0.03387 0.1415 0.418 11.67% Gravity::make_radial_gravity() 21 0.3384 0.352 0.3809 10.63% Castro::initData() 1 0.03837 0.07933 0.1173 3.27% FabArray::ParallelCopy_finish() 41 0.03328 0.05224 0.1134 3.17% Castro::estTimeStep() 21 0.01954 0.06186 0.1072 2.99% FabArray::setVal() 143 0.05406 0.07009 0.07495 2.09% Castro::reset_internal_energy(Fab) 1008 0.04696 0.04979 0.05164 1.44% FabArray::ParallelCopy_nowait() 41 0.02668 0.04375 0.04928 1.38% StateData::FillBoundary(geom) 41 0.03593 0.04254 0.04668 1.30% Castro::normalize_species() 62 0.04033 0.04153 0.04232 1.18% FillPatchIterator::Initialize 41 0.02024 0.03278 0.03794 1.06% Gravity::interpolate_monopole_grav() 21 0.02647 0.0275 0.028 0.78% Castro::construct_new_gravity_source() 10 0.01839 0.02297 0.02434 0.68% Castro::expand_state() 10 0.00952 0.01969 0.02289 0.64% Castro::computeTemp() 63 0.01724 0.01884 0.01982 0.55% Castro::initialize_do_advance() 10 0.008992 0.01653 0.01837 0.51% VisMF::Write(FabArray) 2 0.01148 0.01245 0.01705 0.48% MultiFab::Saxpy() 20 0.009399 0.01467 0.01658 0.46% FabArray::setDomainBndry() 41 0.005103 0.01178 0.01478 0.41% Amr::writePlotFile() 2 0.007873 0.01239 0.01349 0.38% Gravity::get_new_grav_vector() 11 0.008668 0.01153 0.01275 0.36% Castro::construct_old_gravity_source() 10 0.004935 0.01017 0.01188 0.33% Castro::initialize_advance() 10 0.01096 0.0113 0.01184 0.33% MultiFab::contains_nan() 20 0.009985 0.011 0.01175 0.33% Gravity::get_old_grav_vector() 10 0.005604 0.009633 0.01087 0.30% Castro::enforce_min_density() 62 0.005503 0.006254 0.007529 0.21% Castro::initMFs() 1 0.005464 0.005891 0.007066 0.20% Castro::construct_new_source() 50 0.004911 0.006522 0.00703 0.20% main() 1 0.003464 0.005161 0.005598 0.16% StateData::define() 4 0.004487 0.004664 0.005088 0.14% Castro::swap_state_time_levels() 10 0.002873 0.003794 0.003959 0.11% Amr::coarseTimeStep() 10 0.000872 0.001359 0.001937 0.05% Castro::buildMetrics() 1 0.001275 0.00133 0.001451 0.04% Castro::finalize_do_advance() 10 0.0005415 0.001074 0.001241 0.03% Amr::InitAmr() 1 0.0002514 0.0003013 0.0005285 0.01% Amr::timeStep() 10 0.0001751 0.0002395 0.0005135 0.01% Castro::reset_internal_energy(MultiFab) 63 0.000293 0.0003192 0.0003717 0.01% DistributionMapping::LeastUsedCPUs() 1 7.294e-06 0.0002936 0.0003501 0.01% StateDataPhysBCFunct::() 41 0.0001066 0.0001506 0.0001924 0.01% Castro::clean_state() 62 0.0001484 0.0001644 0.0001813 0.01% Amr::FinalizeInit() 1 4.193e-06 1.843e-05 0.0001132 0.00% FabArray::ParallelCopy() 41 8.133e-05 9.557e-05 0.0001068 0.00% Castro::enforce_consistent_e() 1 8.001e-05 8.818e-05 9.805e-05 0.00% Castro::construct_old_source() 50 4.399e-05 7.619e-05 9.803e-05 0.00% Castro::Castro() 1 5.449e-05 7.09e-05 8.576e-05 0.00% Castro::do_old_sources() 10 4.797e-05 6.887e-05 8.535e-05 0.00% FillPatchSingleLevel 41 6.726e-05 7.566e-05 8.422e-05 0.00% Castro::do_new_sources() 10 4.518e-05 6.674e-05 8.237e-05 0.00% Castro::subcycle_advance_ctu() 10 4.122e-05 5.544e-05 8.139e-05 0.00% Amr::writeSmallPlotFile() 1 3.109e-05 5.062e-05 7.111e-05 0.00% Castro::construct_old_gravity() 10 4.192e-05 5.62e-05 6.701e-05 0.00% FabArrayBase::getCPC() 41 4.616e-05 5.166e-05 5.988e-05 0.00% Castro::apply_source_to_state() 20 4.859e-05 5.244e-05 5.859e-05 0.00% Castro::finalize_advance() 10 4.972e-05 5.383e-05 5.733e-05 0.00% Castro::construct_new_gravity() 10 4.437e-05 4.744e-05 5.185e-05 0.00% Castro::advance() 10 3.151e-05 4.005e-05 4.714e-05 0.00% FabArrayBase::CPC::define() 2 2.486e-05 2.857e-05 3.451e-05 0.00% Amr::defBaseLevel() 1 2.646e-05 2.93e-05 3.362e-05 0.00% Castro::check_for_nan() 20 1.949e-05 2.601e-05 3.232e-05 0.00% Castro::enforce_speed_limit() 62 2.125e-05 2.619e-05 2.953e-05 0.00% Castro::post_timestep() 10 1.168e-05 2.05e-05 2.795e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.569e-05 1.935e-05 2.616e-05 0.00% Castro::post_init() 1 9.783e-06 1.178e-05 1.758e-05 0.00% Gravity::swapTimeLevels() 10 6.491e-06 1.265e-05 1.735e-05 0.00% Castro::FluxRegCrseInit 10 6.993e-06 1.288e-05 1.642e-05 0.00% Castro::create_source_corrector() 10 6.936e-06 1.153e-05 1.358e-05 0.00% Amr::initSubcycle() 1 7.806e-06 9.044e-06 1.295e-05 0.00% Gravity::set_mass_offset() 10 5.914e-06 1.033e-05 1.29e-05 0.00% Castro::computeNewDt() 9 7.81e-06 9.06e-06 9.648e-06 0.00% Amr::InitializeInit() 1 1.939e-06 2.949e-06 8.303e-06 0.00% Castro::retry_advance_ctu() 10 4.754e-06 6.311e-06 7.985e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.606e-06 4.402e-06 5.686e-06 0.00% Castro::computeInitialDt() 2 3.532e-06 4.156e-06 4.964e-06 0.00% Castro::post_regrid() 1 1.801e-06 3.235e-06 4.838e-06 0.00% Amr::init() 1 2.328e-06 2.669e-06 3.243e-06 0.00% Castro::FluxRegFineAdd() 10 1.995e-06 2.341e-06 2.979e-06 0.00% Amr::initialInit() 1 1.142e-06 1.451e-06 1.965e-06 0.00% DistributionMapping::Distribute() 1 8.85e-07 1.11e-06 1.533e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.581 3.583 3.583 100.00% Amr::coarseTimeStep() 10 3.387 3.387 3.387 94.51% Amr::timeStep() 10 3.377 3.377 3.378 94.26% Castro::advance() 10 3.36 3.361 3.361 93.80% Castro::subcycle_advance_ctu() 10 3.284 3.288 3.3 92.09% Castro::do_advance_ctu() 10 3.284 3.288 3.3 92.08% Castro::construct_ctu_hydro_source() 10 2.092 2.366 2.473 69.01% Gravity::make_radial_gravity() 21 0.3384 0.352 0.3809 10.63% Castro::construct_old_gravity() 10 0.2007 0.2122 0.2345 6.54% Gravity::get_old_grav_vector() 10 0.1998 0.2114 0.234 6.53% Gravity::get_new_grav_vector() 11 0.2283 0.2299 0.2309 6.44% Castro::construct_new_gravity() 10 0.2026 0.2037 0.2046 5.71% FillPatchIterator::Initialize 41 0.1757 0.1835 0.2037 5.68% Amr::init() 1 0.1811 0.1813 0.1814 5.06% FillPatchSingleLevel 41 0.125 0.1389 0.1784 4.98% Castro::initialize_do_advance() 10 0.155 0.1672 0.1728 4.82% Amr::initialInit() 1 0.1657 0.1661 0.1662 4.64% FabArray::ParallelCopy() 41 0.08158 0.09616 0.1403 3.92% Amr::InitializeInit() 1 0.05684 0.09816 0.1369 3.82% Amr::defBaseLevel() 1 0.05684 0.09816 0.1369 3.82% Castro::expand_state() 10 0.1174 0.1202 0.1238 3.46% Castro::initData() 1 0.04255 0.08338 0.1208 3.37% Castro::clean_state() 62 0.1103 0.116 0.1203 3.36% FabArray::ParallelCopy_finish() 41 0.03328 0.05224 0.1134 3.17% Amr::FinalizeInit() 1 0.02924 0.06791 0.1094 3.05% Castro::estTimeStep() 21 0.01954 0.06186 0.1072 2.99% Castro::computeInitialDt() 2 0.001644 0.04038 0.08176 2.28% Castro::initialize_advance() 10 0.0611 0.07241 0.07661 2.14% FabArray::setVal() 143 0.05406 0.07009 0.07495 2.09% Castro::computeTemp() 63 0.06511 0.06894 0.07177 2.00% Castro::do_new_sources() 10 0.05187 0.06293 0.06629 1.85% Castro::reset_internal_energy(MultiFab) 63 0.04726 0.05011 0.05195 1.45% Castro::reset_internal_energy(Fab) 1008 0.04696 0.04979 0.05164 1.44% Castro::do_old_sources() 10 0.03352 0.04592 0.0494 1.38% FabArray::ParallelCopy_nowait() 41 0.02677 0.04383 0.04936 1.38% StateDataPhysBCFunct::() 41 0.03604 0.04269 0.04682 1.31% StateData::FillBoundary(geom) 41 0.03593 0.04254 0.04668 1.30% Castro::normalize_species() 62 0.04033 0.04153 0.04232 1.18% Castro::construct_new_source() 50 0.02331 0.02949 0.03135 0.87% Gravity::interpolate_monopole_grav() 21 0.02647 0.0275 0.028 0.78% Castro::post_init() 1 0.02647 0.02686 0.02707 0.76% Amr::writePlotFile() 2 0.02474 0.02484 0.02498 0.70% Castro::construct_new_gravity_source() 10 0.01839 0.02297 0.02434 0.68% VisMF::Write(FabArray) 2 0.01148 0.01245 0.01705 0.48% Castro::apply_source_to_state() 20 0.009448 0.01472 0.01663 0.46% MultiFab::Saxpy() 20 0.009399 0.01467 0.01658 0.46% Castro::post_timestep() 10 0.01556 0.01589 0.01627 0.45% FabArray::setDomainBndry() 41 0.005103 0.01178 0.01478 0.41% Castro::construct_old_source() 50 0.004979 0.01024 0.01198 0.33% Castro::construct_old_gravity_source() 10 0.004935 0.01017 0.01188 0.33% Castro::check_for_nan() 20 0.01 0.01103 0.01177 0.33% MultiFab::contains_nan() 20 0.009985 0.011 0.01175 0.33% Castro::Castro() 1 0.009359 0.009767 0.01064 0.30% Castro::enforce_min_density() 62 0.005503 0.006254 0.007529 0.21% Castro::computeNewDt() 9 0.007068 0.007073 0.00708 0.20% Castro::initMFs() 1 0.005464 0.005891 0.007066 0.20% AmrLevel::AmrLevel(dm) 1 0.004505 0.004683 0.005105 0.14% StateData::define() 4 0.004487 0.004664 0.005088 0.14% Castro::swap_state_time_levels() 10 0.002873 0.003794 0.003959 0.11% Castro::post_regrid() 1 0.001493 0.001621 0.001891 0.05% Castro::buildMetrics() 1 0.001391 0.001456 0.001601 0.04% Castro::finalize_do_advance() 10 0.0005415 0.001074 0.001241 0.03% Amr::InitAmr() 1 0.0002604 0.0003103 0.0005414 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.344e-05 0.0002991 0.0003568 0.01% DistributionMapping::LeastUsedCPUs() 1 7.294e-06 0.0002936 0.0003501 0.01% Castro::enforce_consistent_e() 1 8.001e-05 8.818e-05 9.805e-05 0.00% FabArrayBase::getCPC() 41 7.2e-05 8.023e-05 8.714e-05 0.00% Castro::finalize_advance() 10 6.233e-05 6.905e-05 7.261e-05 0.00% Amr::writeSmallPlotFile() 1 3.109e-05 5.062e-05 7.111e-05 0.00% FabArrayBase::CPC::define() 2 2.486e-05 2.857e-05 3.451e-05 0.00% Castro::enforce_speed_limit() 62 2.125e-05 2.619e-05 2.953e-05 0.00% Gravity::swapTimeLevels() 10 6.491e-06 1.265e-05 1.735e-05 0.00% Castro::FluxRegCrseInit 10 6.993e-06 1.288e-05 1.642e-05 0.00% Castro::create_source_corrector() 10 6.936e-06 1.153e-05 1.358e-05 0.00% Amr::initSubcycle() 1 7.806e-06 9.044e-06 1.295e-05 0.00% Gravity::set_mass_offset() 10 5.914e-06 1.033e-05 1.29e-05 0.00% Castro::retry_advance_ctu() 10 4.754e-06 6.311e-06 7.985e-06 0.00% Castro::FluxRegFineAdd() 10 1.995e-06 2.341e-06 2.979e-06 0.00% DistributionMapping::Distribute() 1 8.85e-07 1.11e-06 1.533e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.06-36-g478fd8a4ac98) finalized