MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.06-38-g104466dee1b2) initialized Starting run at 05:38:19 UTC on 2022-06-22. Successfully read inputs file ... Castro git describe: 22.06-12-g556652b03 AMReX git describe: 22.06-38-g104466dee Microphysics git describe: 22.06-4-gef2eb86c reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.01369393 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.34607707 [STEP 1] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.340484382 [STEP 2] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.34047534 [STEP 3] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.340411858 [STEP 4] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.351050128 [STEP 5] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.346648421 [STEP 6] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.337625482 [STEP 7] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.336177709 [STEP 8] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.336943221 [STEP 9] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.33510648 [STEP 10] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009464208 seconds Ending run at 05:38:22 UTC on 2022-06-22. Run time = 3.626232779 Run time without initialization = 3.426664263 Average number of zones advanced per microsecond: 0.765 Average number of zones advanced per microsecond per rank: 0.096 TinyProfiler total time across processes [min...avg...max]: 3.624 ... 3.626 ... 3.626 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.0907 2.3574 2.4881 68.61% Castro::do_advance_ctu() 10 0.02783 0.162 0.4313 11.90% Gravity::make_radial_gravity() 21 0.3438 0.3559 0.3845 10.60% Castro::initData() 1 0.03841 0.07957 0.1356 3.74% FabArray::ParallelCopy_finish() 41 0.04165 0.06148 0.1255 3.46% Castro::estTimeStep() 21 0.02553 0.08551 0.1252 3.45% FabArray::setVal() 143 0.05605 0.06791 0.07156 1.97% Castro::reset_internal_energy(Fab) 1008 0.04778 0.0504 0.05216 1.44% FabArray::ParallelCopy_nowait() 41 0.02559 0.04381 0.05006 1.38% StateData::FillBoundary(geom) 41 0.03736 0.04324 0.04794 1.32% Castro::normalize_species() 62 0.04063 0.04167 0.04291 1.18% FillPatchIterator::Initialize 41 0.02016 0.0319 0.0362 1.00% Gravity::interpolate_monopole_grav() 21 0.02654 0.02764 0.02825 0.78% Castro::construct_new_gravity_source() 10 0.01991 0.02344 0.02464 0.68% Castro::expand_state() 10 0.009562 0.01912 0.023 0.63% Castro::computeTemp() 63 0.01797 0.01921 0.02208 0.61% Castro::initialize_do_advance() 10 0.009028 0.01633 0.01819 0.50% MultiFab::Saxpy() 20 0.008663 0.01454 0.01718 0.47% FabArray::setDomainBndry() 41 0.006076 0.01208 0.01548 0.43% VisMF::Write(FabArray) 2 0.01081 0.01173 0.01428 0.39% Gravity::get_new_grav_vector() 11 0.007684 0.01138 0.0132 0.36% MultiFab::contains_nan() 20 0.009408 0.01118 0.01284 0.35% Amr::writePlotFile() 2 0.009088 0.01174 0.01266 0.35% Castro::construct_old_gravity_source() 10 0.005 0.01014 0.01198 0.33% Gravity::get_old_grav_vector() 10 0.005515 0.009393 0.01107 0.31% Castro::initialize_advance() 10 0.003226 0.008756 0.009829 0.27% Castro::construct_new_source() 50 0.004831 0.00656 0.007234 0.20% Castro::initMFs() 1 0.005529 0.00589 0.006912 0.19% Castro::enforce_min_density() 62 0.005239 0.006035 0.006516 0.18% main() 1 0.003158 0.005003 0.005582 0.15% StateData::define() 4 0.004609 0.00485 0.005197 0.14% Castro::swap_state_time_levels() 10 0.002857 0.003632 0.003878 0.11% Amr::coarseTimeStep() 10 0.0007875 0.001403 0.002645 0.07% Castro::buildMetrics() 1 0.001305 0.001368 0.001486 0.04% Castro::finalize_do_advance() 10 0.0005394 0.0011 0.001275 0.04% Amr::timeStep() 10 0.0001616 0.0002172 0.0004548 0.01% Amr::InitAmr() 1 0.0002492 0.0002874 0.000368 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002805 0.0003215 0.0003675 0.01% Castro::clean_state() 62 0.0001474 0.0001739 0.0002004 0.01% StateDataPhysBCFunct::() 41 0.000103 0.0001366 0.0001572 0.00% DistributionMapping::LeastUsedCPUs() 1 6.983e-06 8.117e-05 0.0001179 0.00% Castro::enforce_consistent_e() 1 7.598e-05 8.717e-05 0.0001086 0.00% FabArray::ParallelCopy() 41 6.684e-05 8.492e-05 0.0001017 0.00% Castro::construct_old_source() 50 3.725e-05 7.883e-05 0.0001008 0.00% Amr::FinalizeInit() 1 3.674e-06 1.607e-05 9.431e-05 0.00% FillPatchSingleLevel 41 6.65e-05 7.466e-05 9.148e-05 0.00% Castro::do_old_sources() 10 3.958e-05 6.724e-05 8.86e-05 0.00% Castro::subcycle_advance_ctu() 10 3.248e-05 5.224e-05 8.707e-05 0.00% Castro::Castro() 1 5.387e-05 6.887e-05 8.59e-05 0.00% Castro::do_new_sources() 10 3.965e-05 6.623e-05 8.218e-05 0.00% Amr::writeSmallPlotFile() 1 2.422e-05 4.433e-05 7.028e-05 0.00% Castro::construct_old_gravity() 10 3.408e-05 5.632e-05 6.991e-05 0.00% Castro::advance() 10 2.544e-05 4.289e-05 6.329e-05 0.00% Castro::apply_source_to_state() 20 3.887e-05 5.228e-05 6.098e-05 0.00% FabArrayBase::getCPC() 41 3.971e-05 4.961e-05 5.973e-05 0.00% Castro::construct_new_gravity() 10 3.514e-05 4.728e-05 5.765e-05 0.00% Castro::finalize_advance() 10 4.774e-05 5.125e-05 5.582e-05 0.00% Amr::defBaseLevel() 1 2.623e-05 3.478e-05 5.037e-05 0.00% Castro::post_timestep() 10 1.326e-05 2.196e-05 3.488e-05 0.00% FabArrayBase::CPC::define() 2 2.389e-05 2.857e-05 3.422e-05 0.00% Castro::check_for_nan() 20 2.237e-05 2.491e-05 3.091e-05 0.00% Castro::enforce_speed_limit() 62 2.198e-05 2.629e-05 3.042e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.322e-05 1.739e-05 2.825e-05 0.00% Castro::post_init() 1 9.087e-06 1.225e-05 2.064e-05 0.00% Gravity::swapTimeLevels() 10 4.899e-06 1.17e-05 1.575e-05 0.00% Castro::create_source_corrector() 10 6.203e-06 1.072e-05 1.28e-05 0.00% Gravity::set_mass_offset() 10 6.455e-06 9.799e-06 1.231e-05 0.00% Castro::computeNewDt() 9 7.23e-06 9.538e-06 1.213e-05 0.00% Castro::FluxRegCrseInit 10 6.034e-06 9.873e-06 1.208e-05 0.00% Amr::init() 1 1.715e-06 4.611e-06 9.857e-06 0.00% Amr::initSubcycle() 1 7.836e-06 8.9e-06 9.378e-06 0.00% Castro::retry_advance_ctu() 10 3.84e-06 5.581e-06 6.484e-06 0.00% Amr::InitializeInit() 1 2.063e-06 2.644e-06 5.868e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.429e-06 4.36e-06 5.603e-06 0.00% Castro::post_regrid() 1 1.833e-06 3.108e-06 4.338e-06 0.00% Castro::computeInitialDt() 2 3.663e-06 3.984e-06 4.273e-06 0.00% Castro::FluxRegFineAdd() 10 1.925e-06 2.326e-06 2.681e-06 0.00% Amr::initialInit() 1 1.139e-06 1.371e-06 1.658e-06 0.00% DistributionMapping::Distribute() 1 1.006e-06 1.143e-06 1.37e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.624 3.626 3.626 100.00% Amr::coarseTimeStep() 10 3.412 3.412 3.412 94.08% Amr::timeStep() 10 3.401 3.402 3.403 93.84% Castro::advance() 10 3.386 3.386 3.387 93.39% Castro::subcycle_advance_ctu() 10 3.313 3.318 3.33 91.84% Castro::do_advance_ctu() 10 3.313 3.318 3.33 91.84% Castro::construct_ctu_hydro_source() 10 2.091 2.357 2.488 68.61% Gravity::make_radial_gravity() 21 0.3438 0.3559 0.3845 10.60% Castro::construct_old_gravity() 10 0.2014 0.2129 0.2357 6.50% Gravity::get_new_grav_vector() 11 0.2298 0.2331 0.2355 6.49% Gravity::get_old_grav_vector() 10 0.2005 0.2121 0.2351 6.48% FillPatchIterator::Initialize 41 0.185 0.1929 0.2151 5.93% Castro::construct_new_gravity() 10 0.204 0.207 0.2091 5.77% Amr::init() 1 0.1991 0.1991 0.1992 5.49% FillPatchSingleLevel 41 0.1339 0.1489 0.1888 5.21% Amr::initialInit() 1 0.1851 0.1852 0.1853 5.11% Castro::initialize_do_advance() 10 0.1634 0.1747 0.182 5.02% Amr::InitializeInit() 1 0.05667 0.0984 0.1557 4.29% Amr::defBaseLevel() 1 0.05667 0.0984 0.1557 4.29% FabArray::ParallelCopy() 41 0.09072 0.1055 0.1513 4.17% Castro::initData() 1 0.04246 0.08353 0.1396 3.85% Castro::expand_state() 10 0.1197 0.1281 0.1337 3.69% Amr::FinalizeInit() 1 0.0296 0.0868 0.1284 3.54% FabArray::ParallelCopy_finish() 41 0.04165 0.06148 0.1255 3.46% Castro::estTimeStep() 21 0.02553 0.08551 0.1252 3.45% Castro::clean_state() 62 0.1116 0.1169 0.1229 3.39% Castro::computeInitialDt() 2 0.00174 0.05903 0.1008 2.78% Castro::computeTemp() 63 0.06639 0.06994 0.07458 2.06% Castro::initialize_advance() 10 0.05525 0.06826 0.07306 2.01% FabArray::setVal() 143 0.05605 0.06791 0.07156 1.97% Castro::do_new_sources() 10 0.0532 0.06332 0.06609 1.82% Castro::reset_internal_energy(MultiFab) 63 0.04814 0.05072 0.0525 1.45% Castro::reset_internal_energy(Fab) 1008 0.04778 0.0504 0.05216 1.44% FabArray::ParallelCopy_nowait() 41 0.02567 0.04389 0.05013 1.38% Castro::do_old_sources() 10 0.03293 0.04552 0.04968 1.37% StateDataPhysBCFunct::() 41 0.03749 0.04338 0.04808 1.33% StateData::FillBoundary(geom) 41 0.03736 0.04324 0.04794 1.32% Castro::normalize_species() 62 0.04063 0.04167 0.04291 1.18% Castro::construct_new_source() 50 0.02475 0.03 0.03178 0.88% Gravity::interpolate_monopole_grav() 21 0.02654 0.02764 0.02825 0.78% Castro::post_init() 1 0.02558 0.02691 0.0272 0.75% Castro::construct_new_gravity_source() 10 0.01991 0.02344 0.02464 0.68% Amr::writePlotFile() 2 0.02336 0.02347 0.0236 0.65% Castro::apply_source_to_state() 20 0.008706 0.0146 0.01724 0.48% MultiFab::Saxpy() 20 0.008663 0.01454 0.01718 0.47% Castro::post_timestep() 10 0.01502 0.01569 0.01615 0.45% FabArray::setDomainBndry() 41 0.006076 0.01208 0.01548 0.43% VisMF::Write(FabArray) 2 0.01081 0.01173 0.01428 0.39% Castro::check_for_nan() 20 0.009431 0.0112 0.01287 0.35% MultiFab::contains_nan() 20 0.009408 0.01118 0.01284 0.35% Castro::construct_old_source() 50 0.005037 0.01021 0.01208 0.33% Castro::construct_old_gravity_source() 10 0.005 0.01014 0.01198 0.33% Castro::Castro() 1 0.009414 0.009882 0.01079 0.30% Castro::computeNewDt() 9 0.007082 0.007098 0.007105 0.20% Castro::initMFs() 1 0.005529 0.00589 0.006912 0.19% Castro::enforce_min_density() 62 0.005239 0.006035 0.006516 0.18% AmrLevel::AmrLevel(dm) 1 0.004631 0.004868 0.005217 0.14% StateData::define() 4 0.004609 0.00485 0.005197 0.14% Castro::swap_state_time_levels() 10 0.002857 0.003632 0.003878 0.11% Castro::post_regrid() 1 0.001512 0.001774 0.002982 0.08% Castro::buildMetrics() 1 0.001425 0.001498 0.001635 0.05% Castro::finalize_do_advance() 10 0.0005394 0.0011 0.001275 0.04% Amr::InitAmr() 1 0.0002581 0.0002963 0.0003758 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.153e-05 8.667e-05 0.0001246 0.00% DistributionMapping::LeastUsedCPUs() 1 6.983e-06 8.117e-05 0.0001179 0.00% Castro::enforce_consistent_e() 1 7.598e-05 8.717e-05 0.0001086 0.00% FabArrayBase::getCPC() 41 6.384e-05 7.819e-05 9.002e-05 0.00% Amr::writeSmallPlotFile() 1 2.422e-05 4.433e-05 7.028e-05 0.00% Castro::finalize_advance() 10 5.57e-05 6.345e-05 7.021e-05 0.00% FabArrayBase::CPC::define() 2 2.389e-05 2.857e-05 3.422e-05 0.00% Castro::enforce_speed_limit() 62 2.198e-05 2.629e-05 3.042e-05 0.00% Gravity::swapTimeLevels() 10 4.899e-06 1.17e-05 1.575e-05 0.00% Castro::create_source_corrector() 10 6.203e-06 1.072e-05 1.28e-05 0.00% Gravity::set_mass_offset() 10 6.455e-06 9.799e-06 1.231e-05 0.00% Castro::FluxRegCrseInit 10 6.034e-06 9.873e-06 1.208e-05 0.00% Amr::initSubcycle() 1 7.836e-06 8.9e-06 9.378e-06 0.00% Castro::retry_advance_ctu() 10 3.84e-06 5.581e-06 6.484e-06 0.00% Castro::FluxRegFineAdd() 10 1.925e-06 2.326e-06 2.681e-06 0.00% DistributionMapping::Distribute() 1 1.006e-06 1.143e-06 1.37e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.06-38-g104466dee1b2) finalized