MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.06-39-g2d931f63cb4d) initialized Starting run at 05:38:20 UTC on 2022-06-23. Successfully read inputs file ... Castro git describe: 22.06-12-g556652b03 AMReX git describe: 22.06-39-g2d931f63c Microphysics git describe: 22.06-5-g42f48026 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.013492032 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.346514044 [STEP 1] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.34848194 [STEP 2] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.354598932 [STEP 3] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.339631885 [STEP 4] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.350019878 [STEP 5] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.342993622 [STEP 6] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.359058672 [STEP 7] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.333988314 [STEP 8] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.331794906 [STEP 9] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.332608107 [STEP 10] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.018493488 seconds Ending run at 05:38:24 UTC on 2022-06-23. Run time = 3.66486762 Run time without initialization = 3.464710583 Average number of zones advanced per microsecond: 0.757 Average number of zones advanced per microsecond per rank: 0.095 TinyProfiler total time across processes [min...avg...max]: 3.662 ... 3.664 ... 3.665 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.0118 2.3850 2.5035 68.31% Castro::do_advance_ctu() 10 0.039 0.1578 0.5337 14.56% Gravity::make_radial_gravity() 21 0.3445 0.356 0.39 10.64% FabArray::ParallelCopy_finish() 41 0.04367 0.06205 0.1384 3.78% Castro::initData() 1 0.03851 0.08276 0.137 3.74% Castro::estTimeStep() 21 0.02604 0.08531 0.1321 3.60% FabArray::setVal() 143 0.05455 0.06663 0.06973 1.90% Castro::reset_internal_energy(Fab) 1008 0.04584 0.05035 0.05191 1.42% FabArray::ParallelCopy_nowait() 41 0.02413 0.04437 0.05016 1.37% StateData::FillBoundary(geom) 41 0.03484 0.04307 0.04735 1.29% Castro::normalize_species() 62 0.03814 0.04135 0.04237 1.16% FillPatchIterator::Initialize 41 0.01849 0.03316 0.03712 1.01% Gravity::interpolate_monopole_grav() 21 0.02519 0.02723 0.0279 0.76% Castro::construct_new_gravity_source() 10 0.01959 0.02317 0.02451 0.67% Castro::expand_state() 10 0.009126 0.01927 0.02273 0.62% Amr::writePlotFile() 2 0.018 0.02016 0.02081 0.57% Castro::computeTemp() 63 0.01732 0.01904 0.01985 0.54% Castro::initialize_do_advance() 10 0.008157 0.01719 0.01917 0.52% MultiFab::Saxpy() 20 0.007815 0.01442 0.01645 0.45% FabArray::setDomainBndry() 41 0.005759 0.01276 0.016 0.44% VisMF::Write(FabArray) 2 0.01116 0.01199 0.01421 0.39% Gravity::get_new_grav_vector() 11 0.006794 0.01157 0.01311 0.36% MultiFab::contains_nan() 20 0.009973 0.01136 0.01222 0.33% Castro::construct_old_gravity_source() 10 0.004694 0.01004 0.01182 0.32% Gravity::get_old_grav_vector() 10 0.00516 0.009623 0.01125 0.31% Castro::initialize_advance() 10 0.003271 0.008409 0.009379 0.26% Castro::initMFs() 1 0.005543 0.006455 0.008706 0.24% Castro::construct_new_source() 50 0.004559 0.006515 0.007221 0.20% StateData::define() 4 0.004581 0.005162 0.006577 0.18% Castro::enforce_min_density() 62 0.004989 0.006131 0.006544 0.18% main() 1 0.003319 0.005257 0.005809 0.16% Amr::coarseTimeStep() 10 0.0009168 0.001924 0.004041 0.11% Castro::swap_state_time_levels() 10 0.002543 0.003568 0.003874 0.11% Castro::buildMetrics() 1 0.001295 0.001474 0.001892 0.05% Castro::finalize_do_advance() 10 0.000458 0.001158 0.001449 0.04% Amr::InitAmr() 1 0.0002603 0.0003254 0.0005778 0.02% Amr::timeStep() 10 0.00018 0.0002438 0.0005343 0.01% DistributionMapping::LeastUsedCPUs() 1 7.619e-06 0.0002996 0.0003678 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002955 0.0003117 0.0003382 0.01% Castro::clean_state() 62 0.0001652 0.0001769 0.0001914 0.01% StateDataPhysBCFunct::() 41 0.000103 0.0001329 0.0001458 0.00% Castro::enforce_consistent_e() 1 8.196e-05 9.228e-05 0.0001185 0.00% Castro::construct_old_source() 50 3.743e-05 7.623e-05 9.914e-05 0.00% FabArray::ParallelCopy() 41 6.654e-05 8.372e-05 9.563e-05 0.00% Castro::do_new_sources() 10 4.445e-05 6.971e-05 9.01e-05 0.00% Castro::do_old_sources() 10 3.679e-05 7.005e-05 8.612e-05 0.00% Amr::FinalizeInit() 1 3.49e-06 1.684e-05 8.067e-05 0.00% FillPatchSingleLevel 41 5.899e-05 7.24e-05 7.931e-05 0.00% Castro::construct_old_gravity() 10 4.078e-05 5.659e-05 7.432e-05 0.00% Castro::Castro() 1 5.123e-05 5.989e-05 7.287e-05 0.00% Castro::subcycle_advance_ctu() 10 3.525e-05 5.119e-05 6.993e-05 0.00% Amr::writeSmallPlotFile() 1 4.926e-05 5.697e-05 6.756e-05 0.00% Castro::apply_source_to_state() 20 3.907e-05 5.111e-05 6.139e-05 0.00% FabArrayBase::getCPC() 41 4.589e-05 4.981e-05 5.729e-05 0.00% Castro::construct_new_gravity() 10 3.718e-05 4.63e-05 5.564e-05 0.00% Castro::finalize_advance() 10 4.699e-05 5.182e-05 5.455e-05 0.00% Castro::advance() 10 3.389e-05 4.341e-05 5.099e-05 0.00% Amr::defBaseLevel() 1 2.783e-05 3.515e-05 4.241e-05 0.00% FabArrayBase::CPC::define() 2 2.154e-05 2.692e-05 3.854e-05 0.00% Castro::check_for_nan() 20 2.009e-05 2.432e-05 3.207e-05 0.00% Castro::enforce_speed_limit() 62 2.175e-05 2.651e-05 3.072e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.667e-05 2.308e-05 2.954e-05 0.00% Castro::post_timestep() 10 1.34e-05 1.686e-05 2.585e-05 0.00% Gravity::swapTimeLevels() 10 5.903e-06 1.263e-05 1.788e-05 0.00% Amr::initSubcycle() 1 8.497e-06 1.042e-05 1.457e-05 0.00% Castro::post_init() 1 9.415e-06 1.097e-05 1.455e-05 0.00% Gravity::set_mass_offset() 10 7.251e-06 1.012e-05 1.359e-05 0.00% Castro::create_source_corrector() 10 7.728e-06 1.13e-05 1.351e-05 0.00% Castro::computeNewDt() 9 8.146e-06 1.02e-05 1.322e-05 0.00% Castro::FluxRegCrseInit 10 6.464e-06 9.671e-06 1.223e-05 0.00% Amr::InitializeInit() 1 2.063e-06 3.129e-06 8.533e-06 0.00% Castro::retry_advance_ctu() 10 4.062e-06 6.117e-06 7.811e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.173e-06 6.166e-06 7.452e-06 0.00% Amr::init() 1 1.915e-06 3.065e-06 7.332e-06 0.00% Castro::post_regrid() 1 2.148e-06 3.628e-06 6.733e-06 0.00% Castro::computeInitialDt() 2 3.419e-06 4.237e-06 5.23e-06 0.00% Castro::FluxRegFineAdd() 10 1.811e-06 2.241e-06 2.812e-06 0.00% Amr::initialInit() 1 1.149e-06 1.541e-06 2.478e-06 0.00% DistributionMapping::Distribute() 1 9.01e-07 1.157e-06 1.448e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.662 3.664 3.665 100.00% Amr::coarseTimeStep() 10 3.44 3.44 3.44 93.88% Amr::timeStep() 10 3.428 3.43 3.431 93.62% Castro::advance() 10 3.413 3.414 3.414 93.16% Castro::subcycle_advance_ctu() 10 3.344 3.347 3.36 91.68% Castro::do_advance_ctu() 10 3.344 3.347 3.36 91.68% Castro::construct_ctu_hydro_source() 10 2.012 2.385 2.503 68.31% Gravity::make_radial_gravity() 21 0.3445 0.356 0.39 10.64% Castro::construct_old_gravity() 10 0.2018 0.2115 0.2372 6.47% Gravity::get_new_grav_vector() 11 0.2311 0.2349 0.237 6.47% Gravity::get_old_grav_vector() 10 0.2009 0.2106 0.2367 6.46% FillPatchIterator::Initialize 41 0.1875 0.1958 0.2219 6.06% Castro::construct_new_gravity() 10 0.2082 0.2117 0.2135 5.83% Amr::init() 1 0.1994 0.1997 0.1998 5.45% FillPatchSingleLevel 41 0.1351 0.1499 0.1977 5.39% Amr::initialInit() 1 0.1857 0.1861 0.1863 5.08% Castro::initialize_do_advance() 10 0.166 0.1775 0.1835 5.01% FabArray::ParallelCopy() 41 0.09266 0.1066 0.1627 4.44% Amr::InitializeInit() 1 0.05714 0.1023 0.1598 4.36% Amr::defBaseLevel() 1 0.05713 0.1023 0.1598 4.36% Castro::initData() 1 0.04211 0.08657 0.1406 3.84% FabArray::ParallelCopy_finish() 41 0.04367 0.06205 0.1384 3.78% Castro::expand_state() 10 0.1242 0.1301 0.1342 3.66% Castro::estTimeStep() 21 0.02604 0.08531 0.1321 3.60% Amr::FinalizeInit() 1 0.02629 0.08377 0.1292 3.53% Castro::clean_state() 62 0.1059 0.1165 0.1192 3.25% Castro::computeInitialDt() 2 0.001592 0.05916 0.1044 2.85% Castro::computeTemp() 63 0.06346 0.0697 0.07144 1.95% Castro::initialize_advance() 10 0.05324 0.06688 0.06978 1.90% FabArray::setVal() 143 0.05455 0.06663 0.06973 1.90% Castro::do_new_sources() 10 0.0516 0.06311 0.06574 1.79% Castro::reset_internal_energy(MultiFab) 63 0.04614 0.05066 0.05224 1.43% Castro::reset_internal_energy(Fab) 1008 0.04584 0.05035 0.05191 1.42% FabArray::ParallelCopy_nowait() 41 0.02422 0.04445 0.05023 1.37% Castro::do_old_sources() 10 0.03106 0.04499 0.04877 1.33% StateDataPhysBCFunct::() 41 0.03497 0.0432 0.04748 1.30% StateData::FillBoundary(geom) 41 0.03484 0.04307 0.04735 1.29% Castro::normalize_species() 62 0.03814 0.04135 0.04237 1.16% Amr::writePlotFile() 2 0.03197 0.03215 0.0324 0.88% Castro::construct_new_source() 50 0.02415 0.02968 0.03152 0.86% Gravity::interpolate_monopole_grav() 21 0.02519 0.02723 0.0279 0.76% Castro::construct_new_gravity_source() 10 0.01959 0.02317 0.02451 0.67% Castro::post_init() 1 0.02372 0.02395 0.02411 0.66% Castro::post_timestep() 10 0.01471 0.01615 0.01687 0.46% Castro::apply_source_to_state() 20 0.007867 0.01447 0.01651 0.45% MultiFab::Saxpy() 20 0.007815 0.01442 0.01645 0.45% FabArray::setDomainBndry() 41 0.005759 0.01276 0.016 0.44% VisMF::Write(FabArray) 2 0.01116 0.01199 0.01421 0.39% Castro::Castro() 1 0.009238 0.01021 0.01238 0.34% Castro::check_for_nan() 20 0.009993 0.01139 0.01225 0.33% MultiFab::contains_nan() 20 0.009973 0.01136 0.01222 0.33% Castro::construct_old_source() 50 0.004732 0.01012 0.01192 0.33% Castro::construct_old_gravity_source() 10 0.004694 0.01004 0.01182 0.32% Castro::initMFs() 1 0.005543 0.006455 0.008706 0.24% Castro::computeNewDt() 9 0.00737 0.007381 0.007386 0.20% AmrLevel::AmrLevel(dm) 1 0.0046 0.005185 0.006604 0.18% StateData::define() 4 0.004581 0.005162 0.006577 0.18% Castro::enforce_min_density() 62 0.004989 0.006131 0.006544 0.18% Castro::swap_state_time_levels() 10 0.002543 0.003568 0.003874 0.11% Castro::buildMetrics() 1 0.001419 0.001617 0.002103 0.06% Castro::post_regrid() 1 0.0015 0.001555 0.001603 0.04% Castro::finalize_do_advance() 10 0.000458 0.001158 0.001449 0.04% Amr::InitAmr() 1 0.0002697 0.0003358 0.0005924 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.346e-05 0.0003069 0.0003763 0.01% DistributionMapping::LeastUsedCPUs() 1 7.619e-06 0.0002996 0.0003678 0.01% Castro::enforce_consistent_e() 1 8.196e-05 9.228e-05 0.0001185 0.00% FabArrayBase::getCPC() 41 7.017e-05 7.673e-05 9.583e-05 0.00% Amr::writeSmallPlotFile() 1 4.926e-05 5.697e-05 6.756e-05 0.00% Castro::finalize_advance() 10 5.73e-05 6.373e-05 6.705e-05 0.00% FabArrayBase::CPC::define() 2 2.154e-05 2.692e-05 3.854e-05 0.00% Castro::enforce_speed_limit() 62 2.175e-05 2.651e-05 3.072e-05 0.00% Gravity::swapTimeLevels() 10 5.903e-06 1.263e-05 1.788e-05 0.00% Amr::initSubcycle() 1 8.497e-06 1.042e-05 1.457e-05 0.00% Gravity::set_mass_offset() 10 7.251e-06 1.012e-05 1.359e-05 0.00% Castro::create_source_corrector() 10 7.728e-06 1.13e-05 1.351e-05 0.00% Castro::FluxRegCrseInit 10 6.464e-06 9.671e-06 1.223e-05 0.00% Castro::retry_advance_ctu() 10 4.062e-06 6.117e-06 7.811e-06 0.00% Castro::FluxRegFineAdd() 10 1.811e-06 2.241e-06 2.812e-06 0.00% DistributionMapping::Distribute() 1 9.01e-07 1.157e-06 1.448e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.06-39-g2d931f63cb4d) finalized