MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.06-51-g8fb23ec17a58) initialized Starting run at 05:38:10 UTC on 2022-06-30. Successfully read inputs file ... Castro git describe: 22.06-12-g556652b03 AMReX git describe: 22.06-51-g8fb23ec17 Microphysics git describe: 22.06-7-ga6a75714 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014604441 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.362449489 [STEP 1] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.340633067 [STEP 2] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.338216148 [STEP 3] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.339664487 [STEP 4] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.348531345 [STEP 5] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.349554398 [STEP 6] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.333789353 [STEP 7] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.33555601 [STEP 8] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.340323151 [STEP 9] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.335128795 [STEP 10] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009944716 seconds Ending run at 05:38:14 UTC on 2022-06-30. Run time = 3.634033517 Run time without initialization = 3.440091143 Average number of zones advanced per microsecond: 0.762 Average number of zones advanced per microsecond per rank: 0.095 TinyProfiler total time across processes [min...avg...max]: 3.632 ... 3.634 ... 3.634 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1036 2.3848 2.4825 68.31% Castro::do_advance_ctu() 10 0.04411 0.1421 0.4262 11.73% Gravity::make_radial_gravity() 21 0.3541 0.3635 0.3894 10.72% Castro::initData() 1 0.04448 0.08588 0.1271 3.50% FabArray::ParallelCopy_finish() 41 0.03982 0.06068 0.1229 3.38% Castro::estTimeStep() 21 0.02574 0.06944 0.1182 3.25% FabArray::setVal() 143 0.05969 0.06947 0.07208 1.98% Castro::reset_internal_energy(Fab) 1008 0.0468 0.05009 0.052 1.43% FabArray::ParallelCopy_nowait() 41 0.02597 0.04381 0.04925 1.36% StateData::FillBoundary(geom) 41 0.03751 0.04302 0.04756 1.31% Castro::normalize_species() 62 0.04098 0.0416 0.04259 1.17% FillPatchIterator::Initialize 41 0.0204 0.03264 0.03709 1.02% Gravity::interpolate_monopole_grav() 21 0.02716 0.02771 0.02819 0.78% Castro::construct_new_gravity_source() 10 0.01986 0.02281 0.02363 0.65% Castro::expand_state() 10 0.009603 0.01899 0.0223 0.61% Castro::computeTemp() 63 0.01712 0.0191 0.01989 0.55% Castro::initialize_do_advance() 10 0.008948 0.01651 0.01835 0.50% VisMF::Write(FabArray) 2 0.01204 0.01296 0.0171 0.47% MultiFab::Saxpy() 20 0.008731 0.01443 0.01658 0.46% Amr::writePlotFile() 2 0.007683 0.01196 0.01309 0.36% FabArray::setDomainBndry() 41 0.004829 0.01048 0.0125 0.34% Gravity::get_new_grav_vector() 11 0.007494 0.01157 0.01234 0.34% MultiFab::contains_nan() 20 0.009888 0.01124 0.01208 0.33% Castro::construct_old_gravity_source() 10 0.004946 0.01007 0.01195 0.33% Gravity::get_old_grav_vector() 10 0.0057 0.00953 0.01125 0.31% Castro::initialize_advance() 10 0.00706 0.009981 0.01044 0.29% Castro::construct_new_source() 50 0.004774 0.006543 0.007128 0.20% Castro::enforce_min_density() 62 0.005382 0.006092 0.006509 0.18% Castro::initMFs() 1 0.005684 0.006149 0.006383 0.18% main() 1 0.003398 0.005003 0.005508 0.15% StateData::define() 4 0.004655 0.004997 0.005124 0.14% Castro::swap_state_time_levels() 10 0.002047 0.003782 0.004321 0.12% Amr::coarseTimeStep() 10 0.001076 0.001558 0.001938 0.05% Castro::buildMetrics() 1 0.001325 0.001431 0.001479 0.04% Castro::finalize_do_advance() 10 0.0005404 0.001088 0.001272 0.04% Amr::timeStep() 10 0.0001746 0.0002284 0.0004886 0.01% Amr::InitAmr() 1 0.000263 0.0003067 0.0004461 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0003031 0.0003215 0.0003497 0.01% DistributionMapping::LeastUsedCPUs() 1 8.125e-06 0.0001561 0.000207 0.01% Castro::clean_state() 62 0.0001514 0.0001714 0.0002052 0.01% StateDataPhysBCFunct::() 41 0.0001166 0.0001339 0.0001485 0.00% Castro::enforce_consistent_e() 1 7.668e-05 9.237e-05 0.0001098 0.00% Castro::construct_old_source() 50 4.381e-05 7.955e-05 0.0001061 0.00% FabArray::ParallelCopy() 41 7.527e-05 8.81e-05 9.565e-05 0.00% Castro::Castro() 1 5.942e-05 7.345e-05 9.483e-05 0.00% Castro::do_old_sources() 10 4.075e-05 7.285e-05 8.861e-05 0.00% Castro::do_new_sources() 10 4.085e-05 7.25e-05 8.564e-05 0.00% FillPatchSingleLevel 41 6.902e-05 7.721e-05 8.42e-05 0.00% Castro::apply_source_to_state() 20 4.355e-05 5.909e-05 7.561e-05 0.00% Castro::construct_old_gravity() 10 3.473e-05 5.545e-05 7.441e-05 0.00% Amr::FinalizeInit() 1 4.181e-06 1.339e-05 7.167e-05 0.00% Amr::writeSmallPlotFile() 1 3.133e-05 5.536e-05 7.129e-05 0.00% FabArrayBase::getCPC() 41 4.911e-05 5.592e-05 6.851e-05 0.00% Castro::advance() 10 3.201e-05 4.621e-05 6.82e-05 0.00% Castro::finalize_advance() 10 4.802e-05 5.321e-05 5.939e-05 0.00% Castro::subcycle_advance_ctu() 10 3.397e-05 5.025e-05 5.613e-05 0.00% Castro::construct_new_gravity() 10 3.693e-05 4.488e-05 4.759e-05 0.00% Amr::defBaseLevel() 1 2.801e-05 3.274e-05 4.029e-05 0.00% Castro::enforce_speed_limit() 62 3.058e-05 3.35e-05 3.63e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.304e-05 1.944e-05 3.075e-05 0.00% FabArrayBase::CPC::define() 2 2.268e-05 2.649e-05 3.059e-05 0.00% Castro::check_for_nan() 20 1.925e-05 2.18e-05 2.413e-05 0.00% Gravity::swapTimeLevels() 10 5.389e-06 1.243e-05 1.654e-05 0.00% Castro::post_timestep() 10 1.258e-05 1.395e-05 1.529e-05 0.00% Castro::post_init() 1 8.314e-06 9.917e-06 1.29e-05 0.00% Castro::create_source_corrector() 10 6.413e-06 9.97e-06 1.284e-05 0.00% Amr::initSubcycle() 1 9.56e-06 1.033e-05 1.253e-05 0.00% Castro::FluxRegCrseInit 10 6.566e-06 1.014e-05 1.229e-05 0.00% Gravity::set_mass_offset() 10 6.851e-06 8.996e-06 1.107e-05 0.00% Castro::computeNewDt() 9 7.277e-06 9.238e-06 1.045e-05 0.00% Castro::retry_advance_ctu() 10 4.652e-06 6.016e-06 7.711e-06 0.00% Amr::InitializeInit() 1 2.097e-06 3.1e-06 7.502e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.162e-06 4.511e-06 5.274e-06 0.00% Castro::post_regrid() 1 1.678e-06 3.006e-06 4.457e-06 0.00% Castro::computeInitialDt() 2 3.359e-06 3.866e-06 4.168e-06 0.00% Castro::FluxRegFineAdd() 10 2.027e-06 2.353e-06 2.78e-06 0.00% Amr::init() 1 1.745e-06 2.151e-06 2.551e-06 0.00% Amr::initialInit() 1 1.388e-06 1.818e-06 2.229e-06 0.00% DistributionMapping::Distribute() 1 1.005e-06 1.075e-06 1.177e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.632 3.634 3.634 100.00% Amr::coarseTimeStep() 10 3.425 3.425 3.425 94.24% Amr::timeStep() 10 3.414 3.415 3.415 93.98% Castro::advance() 10 3.398 3.399 3.399 93.53% Castro::subcycle_advance_ctu() 10 3.325 3.328 3.336 91.81% Castro::do_advance_ctu() 10 3.325 3.328 3.336 91.81% Castro::construct_ctu_hydro_source() 10 2.104 2.385 2.483 68.31% Gravity::make_radial_gravity() 21 0.3541 0.3635 0.3894 10.72% Gravity::get_new_grav_vector() 11 0.2383 0.2398 0.2416 6.65% Castro::construct_old_gravity() 10 0.2064 0.2147 0.2334 6.42% Gravity::get_old_grav_vector() 10 0.2054 0.2138 0.2328 6.41% Castro::construct_new_gravity() 10 0.2104 0.2117 0.2132 5.87% FillPatchIterator::Initialize 41 0.1809 0.191 0.212 5.83% Amr::init() 1 0.1933 0.1935 0.1935 5.33% FillPatchSingleLevel 41 0.132 0.1479 0.1867 5.14% Castro::initialize_do_advance() 10 0.1624 0.1727 0.1794 4.94% Amr::initialInit() 1 0.1783 0.1786 0.1788 4.92% FabArray::ParallelCopy() 41 0.08868 0.1047 0.149 4.10% Amr::InitializeInit() 1 0.06435 0.1057 0.1474 4.05% Amr::defBaseLevel() 1 0.06434 0.1057 0.1474 4.05% Castro::initData() 1 0.04833 0.0901 0.1312 3.61% Castro::expand_state() 10 0.1196 0.126 0.1312 3.61% FabArray::ParallelCopy_finish() 41 0.03982 0.06068 0.1229 3.38% Castro::clean_state() 62 0.1102 0.1164 0.1196 3.29% Castro::estTimeStep() 21 0.02574 0.06944 0.1182 3.25% Amr::FinalizeInit() 1 0.03143 0.07285 0.1141 3.14% Castro::computeInitialDt() 2 0.00181 0.04341 0.08481 2.33% Castro::initialize_advance() 10 0.0615 0.07068 0.0731 2.01% Castro::computeTemp() 63 0.06422 0.06952 0.07218 1.99% FabArray::setVal() 143 0.05969 0.06947 0.07208 1.98% Castro::do_new_sources() 10 0.05331 0.06301 0.06514 1.79% Castro::reset_internal_energy(MultiFab) 63 0.0471 0.05042 0.05233 1.44% Castro::reset_internal_energy(Fab) 1008 0.0468 0.05009 0.052 1.43% FabArray::ParallelCopy_nowait() 41 0.02607 0.04389 0.04933 1.36% Castro::do_old_sources() 10 0.03283 0.04524 0.04925 1.36% StateDataPhysBCFunct::() 41 0.03763 0.04315 0.04769 1.31% StateData::FillBoundary(geom) 41 0.03751 0.04302 0.04756 1.31% Castro::normalize_species() 62 0.04098 0.0416 0.04259 1.17% Castro::construct_new_source() 50 0.02464 0.02936 0.03062 0.84% Castro::post_init() 1 0.02843 0.02877 0.02903 0.80% Gravity::interpolate_monopole_grav() 21 0.02716 0.02771 0.02819 0.78% Amr::writePlotFile() 2 0.02471 0.02492 0.02531 0.70% Castro::construct_new_gravity_source() 10 0.01986 0.02281 0.02363 0.65% VisMF::Write(FabArray) 2 0.01204 0.01296 0.0171 0.47% Castro::apply_source_to_state() 20 0.00878 0.01449 0.01665 0.46% MultiFab::Saxpy() 20 0.008731 0.01443 0.01658 0.46% Castro::post_timestep() 10 0.01541 0.01585 0.01616 0.44% FabArray::setDomainBndry() 41 0.004829 0.01048 0.0125 0.34% Castro::check_for_nan() 20 0.009909 0.01126 0.0121 0.33% MultiFab::contains_nan() 20 0.009888 0.01124 0.01208 0.33% Castro::construct_old_source() 50 0.004993 0.01015 0.01206 0.33% Castro::construct_old_gravity_source() 10 0.004946 0.01007 0.01195 0.33% Castro::Castro() 1 0.008776 0.01042 0.0109 0.30% Castro::computeNewDt() 9 0.007431 0.007442 0.007451 0.21% Castro::enforce_min_density() 62 0.005382 0.006092 0.006509 0.18% Castro::initMFs() 1 0.005684 0.006149 0.006383 0.18% AmrLevel::AmrLevel(dm) 1 0.004676 0.005016 0.005145 0.14% StateData::define() 4 0.004655 0.004997 0.005124 0.14% Castro::swap_state_time_levels() 10 0.002047 0.003782 0.004321 0.12% Castro::post_regrid() 1 0.001535 0.001696 0.001938 0.05% Castro::buildMetrics() 1 0.001445 0.001568 0.001622 0.04% Castro::finalize_do_advance() 10 0.0005404 0.001088 0.001272 0.04% Amr::InitAmr() 1 0.0002726 0.0003171 0.0004563 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.339e-05 0.0001617 0.0002135 0.01% DistributionMapping::LeastUsedCPUs() 1 8.125e-06 0.0001561 0.000207 0.01% Castro::enforce_consistent_e() 1 7.668e-05 9.237e-05 0.0001098 0.00% FabArrayBase::getCPC() 41 7.27e-05 8.241e-05 9.618e-05 0.00% Castro::finalize_advance() 10 5.898e-05 6.57e-05 7.167e-05 0.00% Amr::writeSmallPlotFile() 1 3.133e-05 5.536e-05 7.129e-05 0.00% Castro::enforce_speed_limit() 62 3.058e-05 3.35e-05 3.63e-05 0.00% FabArrayBase::CPC::define() 2 2.268e-05 2.649e-05 3.059e-05 0.00% Gravity::swapTimeLevels() 10 5.389e-06 1.243e-05 1.654e-05 0.00% Castro::create_source_corrector() 10 6.413e-06 9.97e-06 1.284e-05 0.00% Amr::initSubcycle() 1 9.56e-06 1.033e-05 1.253e-05 0.00% Castro::FluxRegCrseInit 10 6.566e-06 1.014e-05 1.229e-05 0.00% Gravity::set_mass_offset() 10 6.851e-06 8.996e-06 1.107e-05 0.00% Castro::retry_advance_ctu() 10 4.652e-06 6.016e-06 7.711e-06 0.00% Castro::FluxRegFineAdd() 10 2.027e-06 2.353e-06 2.78e-06 0.00% DistributionMapping::Distribute() 1 1.005e-06 1.075e-06 1.177e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.06-51-g8fb23ec17a58) finalized