MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.06-51-g8fb23ec17a58) initialized Starting run at 05:37:57 UTC on 2022-07-01. Successfully read inputs file ... Castro git describe: 22.06-14-gda0f2312b AMReX git describe: 22.06-51-g8fb23ec17 Microphysics git describe: 22.06-7-ga6a75714 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.013235095 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.352648568 [STEP 1] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.343089844 [STEP 2] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.342636798 [STEP 3] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.341204046 [STEP 4] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.349764765 [STEP 5] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.34640525 [STEP 6] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.33285633 [STEP 7] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.33369486 [STEP 8] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.333632457 [STEP 9] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.333245941 [STEP 10] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009805643 seconds Ending run at 05:38:01 UTC on 2022-07-01. Run time = 3.618279757 Run time without initialization = 3.424923253 Average number of zones advanced per microsecond: 0.765 Average number of zones advanced per microsecond per rank: 0.096 TinyProfiler total time across processes [min...avg...max]: 3.618 ... 3.618 ... 3.618 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.0777 2.3657 2.4811 68.57% Castro::do_advance_ctu() 10 0.03155 0.1507 0.4421 12.22% Gravity::make_radial_gravity() 21 0.341 0.3528 0.3772 10.42% Castro::estTimeStep() 21 0.03014 0.08189 0.1322 3.65% Castro::initData() 1 0.03837 0.08093 0.1315 3.63% FabArray::ParallelCopy_finish() 41 0.04054 0.05743 0.1085 3.00% FabArray::setVal() 143 0.06227 0.07102 0.07496 2.07% Castro::reset_internal_energy(Fab) 1008 0.04721 0.0502 0.05265 1.46% FabArray::ParallelCopy_nowait() 41 0.02795 0.04371 0.0493 1.36% StateData::FillBoundary(geom) 41 0.0362 0.04315 0.04836 1.34% Castro::normalize_species() 62 0.04095 0.0418 0.04229 1.17% FillPatchIterator::Initialize 41 0.02041 0.03231 0.03654 1.01% Gravity::interpolate_monopole_grav() 21 0.02701 0.02771 0.02822 0.78% Castro::construct_new_gravity_source() 10 0.02184 0.02357 0.02486 0.69% Castro::expand_state() 10 0.009611 0.01866 0.02218 0.61% Castro::computeTemp() 63 0.01772 0.01903 0.02017 0.56% Castro::initialize_do_advance() 10 0.00909 0.0166 0.01868 0.52% MultiFab::Saxpy() 20 0.01136 0.0147 0.01608 0.44% VisMF::Write(FabArray) 2 0.01127 0.01186 0.01537 0.42% Gravity::get_new_grav_vector() 11 0.009725 0.01189 0.01303 0.36% FabArray::setDomainBndry() 41 0.005029 0.01052 0.01248 0.34% Amr::writePlotFile() 2 0.007891 0.01154 0.01227 0.34% MultiFab::contains_nan() 20 0.01087 0.01161 0.01225 0.34% Castro::construct_old_gravity_source() 10 0.004972 0.0103 0.01205 0.33% Gravity::get_old_grav_vector() 10 0.006185 0.00958 0.01121 0.31% Castro::initialize_advance() 10 0.01059 0.01077 0.01105 0.31% Castro::construct_new_source() 50 0.004887 0.006464 0.007096 0.20% Castro::initMFs() 1 0.005462 0.005874 0.007077 0.20% Castro::enforce_min_density() 62 0.005547 0.006065 0.006604 0.18% main() 1 0.004594 0.005032 0.005239 0.14% StateData::define() 4 0.004506 0.004665 0.005076 0.14% Castro::swap_state_time_levels() 10 0.003922 0.003983 0.004013 0.11% Amr::coarseTimeStep() 10 0.0008482 0.001255 0.001752 0.05% Castro::buildMetrics() 1 0.001272 0.001337 0.001514 0.04% Castro::finalize_do_advance() 10 0.0005607 0.001032 0.001162 0.03% Amr::timeStep() 10 0.0001836 0.0002441 0.0005155 0.01% Amr::InitAmr() 1 0.0002493 0.0002769 0.0003649 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002979 0.0003152 0.0003263 0.01% Castro::clean_state() 62 0.0001375 0.0001625 0.0001922 0.01% StateDataPhysBCFunct::() 41 0.0001002 0.0001335 0.0001594 0.00% DistributionMapping::LeastUsedCPUs() 1 7.074e-06 9.202e-05 0.0001097 0.00% FabArray::ParallelCopy() 41 7.913e-05 8.807e-05 9.616e-05 0.00% Castro::construct_old_source() 50 4.395e-05 7.607e-05 9.54e-05 0.00% Castro::do_new_sources() 10 4.69e-05 7.39e-05 9.487e-05 0.00% Castro::enforce_consistent_e() 1 7.982e-05 8.848e-05 9.455e-05 0.00% Castro::do_old_sources() 10 4.191e-05 7.205e-05 8.863e-05 0.00% Amr::FinalizeInit() 1 4.374e-06 1.637e-05 8.824e-05 0.00% Castro::Castro() 1 5.613e-05 7.032e-05 8.194e-05 0.00% FillPatchSingleLevel 41 6.591e-05 7.459e-05 8.178e-05 0.00% Castro::subcycle_advance_ctu() 10 4.048e-05 5.297e-05 7.338e-05 0.00% Amr::writeSmallPlotFile() 1 3.053e-05 5.726e-05 7.16e-05 0.00% Castro::construct_old_gravity() 10 3.652e-05 5.461e-05 6.604e-05 0.00% Castro::apply_source_to_state() 20 3.826e-05 5.005e-05 6.444e-05 0.00% FabArrayBase::getCPC() 41 4.726e-05 5.322e-05 6.344e-05 0.00% Castro::finalize_advance() 10 5.015e-05 5.342e-05 5.713e-05 0.00% Castro::construct_new_gravity() 10 4.03e-05 4.839e-05 5.603e-05 0.00% Castro::advance() 10 3.548e-05 4.324e-05 5.109e-05 0.00% Amr::defBaseLevel() 1 2.591e-05 3.799e-05 4.647e-05 0.00% FabArrayBase::CPC::define() 2 2.411e-05 2.779e-05 3.516e-05 0.00% Castro::enforce_speed_limit() 62 2.706e-05 3.06e-05 3.494e-05 0.00% Castro::check_for_nan() 20 1.901e-05 2.196e-05 2.655e-05 0.00% Castro::computeNewDt() 9 8.106e-06 1.291e-05 2.374e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.426e-05 1.552e-05 1.959e-05 0.00% Castro::post_timestep() 10 1.248e-05 1.436e-05 1.607e-05 0.00% Gravity::swapTimeLevels() 10 8.256e-06 1.304e-05 1.582e-05 0.00% Castro::post_init() 1 8.506e-06 9.672e-06 1.343e-05 0.00% Castro::FluxRegCrseInit 10 7.823e-06 9.909e-06 1.299e-05 0.00% Castro::create_source_corrector() 10 7.185e-06 9.932e-06 1.251e-05 0.00% Gravity::set_mass_offset() 10 6.554e-06 9.091e-06 1.089e-05 0.00% Amr::initSubcycle() 1 8.507e-06 9.147e-06 9.855e-06 0.00% Amr::initialInit() 1 1.434e-06 2.311e-06 7.851e-06 0.00% Castro::retry_advance_ctu() 10 4.788e-06 6.079e-06 7.438e-06 0.00% Amr::InitializeInit() 1 2.033e-06 2.674e-06 5.367e-06 0.00% Castro::computeInitialDt() 2 3.348e-06 4.193e-06 5.341e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.504e-06 4.224e-06 5.052e-06 0.00% Castro::post_regrid() 1 1.724e-06 3.018e-06 5.019e-06 0.00% Amr::init() 1 1.504e-06 2.046e-06 2.764e-06 0.00% Castro::FluxRegFineAdd() 10 1.882e-06 2.205e-06 2.594e-06 0.00% DistributionMapping::Distribute() 1 8.46e-07 1.159e-06 1.548e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.618 3.618 3.618 100.00% Amr::coarseTimeStep() 10 3.41 3.41 3.41 94.24% Amr::timeStep() 10 3.4 3.401 3.401 93.99% Castro::advance() 10 3.384 3.385 3.385 93.54% Castro::subcycle_advance_ctu() 10 3.309 3.311 3.314 91.60% Castro::do_advance_ctu() 10 3.309 3.311 3.314 91.60% Castro::construct_ctu_hydro_source() 10 2.078 2.366 2.481 68.57% Gravity::make_radial_gravity() 21 0.341 0.3528 0.3772 10.42% Gravity::get_new_grav_vector() 11 0.2284 0.2302 0.2322 6.42% Castro::construct_old_gravity() 10 0.2033 0.2134 0.232 6.41% Gravity::get_old_grav_vector() 10 0.2024 0.2124 0.231 6.38% Castro::construct_new_gravity() 10 0.2038 0.2053 0.2069 5.72% FillPatchIterator::Initialize 41 0.18 0.1875 0.1984 5.48% Amr::init() 1 0.1928 0.1929 0.193 5.33% Amr::initialInit() 1 0.1792 0.1794 0.1796 4.96% Castro::initialize_do_advance() 10 0.1532 0.17 0.1772 4.90% FillPatchSingleLevel 41 0.1321 0.1447 0.173 4.78% Amr::InitializeInit() 1 0.05673 0.09967 0.1513 4.18% Amr::defBaseLevel() 1 0.05673 0.09966 0.1513 4.18% FabArray::ParallelCopy() 41 0.08804 0.1013 0.1366 3.78% Castro::initData() 1 0.04249 0.08508 0.1354 3.74% Castro::estTimeStep() 21 0.03014 0.08189 0.1322 3.65% Castro::expand_state() 10 0.1137 0.1231 0.1282 3.54% Amr::FinalizeInit() 1 0.0279 0.07974 0.1229 3.40% Castro::clean_state() 62 0.1121 0.1166 0.1208 3.34% FabArray::ParallelCopy_finish() 41 0.04054 0.05743 0.1085 3.00% Castro::computeInitialDt() 2 0.001728 0.05339 0.09635 2.66% Castro::initialize_advance() 10 0.06996 0.07335 0.07539 2.08% FabArray::setVal() 143 0.06227 0.07102 0.07496 2.07% Castro::computeTemp() 63 0.06533 0.06954 0.07314 2.02% Castro::do_new_sources() 10 0.05716 0.06384 0.06596 1.82% Castro::reset_internal_energy(MultiFab) 63 0.04754 0.05051 0.05297 1.46% Castro::reset_internal_energy(Fab) 1008 0.04721 0.0502 0.05265 1.46% Castro::do_old_sources() 10 0.03451 0.04591 0.05074 1.40% FabArray::ParallelCopy_nowait() 41 0.02802 0.04379 0.04939 1.37% StateDataPhysBCFunct::() 41 0.03631 0.04328 0.0485 1.34% StateData::FillBoundary(geom) 41 0.0362 0.04315 0.04836 1.34% Castro::normalize_species() 62 0.04095 0.0418 0.04229 1.17% Castro::construct_new_source() 50 0.02673 0.03003 0.0312 0.86% Gravity::interpolate_monopole_grav() 21 0.02701 0.02771 0.02822 0.78% Castro::post_init() 1 0.02528 0.02563 0.02584 0.71% Castro::construct_new_gravity_source() 10 0.02184 0.02357 0.02486 0.69% Amr::writePlotFile() 2 0.02324 0.02339 0.02359 0.65% Castro::apply_source_to_state() 20 0.0114 0.01475 0.01613 0.45% Castro::post_timestep() 10 0.0154 0.01579 0.01613 0.45% MultiFab::Saxpy() 20 0.01136 0.0147 0.01608 0.44% VisMF::Write(FabArray) 2 0.01127 0.01186 0.01537 0.42% FabArray::setDomainBndry() 41 0.005029 0.01052 0.01248 0.34% Castro::check_for_nan() 20 0.01089 0.01163 0.01227 0.34% MultiFab::contains_nan() 20 0.01087 0.01161 0.01225 0.34% Castro::construct_old_source() 50 0.005016 0.01038 0.01214 0.34% Castro::construct_old_gravity_source() 10 0.004972 0.0103 0.01205 0.33% Castro::Castro() 1 0.009394 0.009769 0.01069 0.30% Castro::computeNewDt() 9 0.007111 0.007122 0.007129 0.20% Castro::initMFs() 1 0.005462 0.005874 0.007077 0.20% Castro::enforce_min_density() 62 0.005547 0.006065 0.006604 0.18% AmrLevel::AmrLevel(dm) 1 0.004521 0.00468 0.005091 0.14% StateData::define() 4 0.004506 0.004665 0.005076 0.14% Castro::swap_state_time_levels() 10 0.003922 0.003983 0.004013 0.11% Castro::post_regrid() 1 0.001527 0.001622 0.001814 0.05% Castro::buildMetrics() 1 0.001398 0.00147 0.001663 0.05% Castro::finalize_do_advance() 10 0.0005607 0.001032 0.001162 0.03% Amr::InitAmr() 1 0.000258 0.000286 0.0003735 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.145e-05 9.74e-05 0.0001161 0.00% DistributionMapping::LeastUsedCPUs() 1 7.074e-06 9.202e-05 0.0001097 0.00% Castro::enforce_consistent_e() 1 7.982e-05 8.848e-05 9.455e-05 0.00% FabArrayBase::getCPC() 41 7.349e-05 8.101e-05 8.981e-05 0.00% Amr::writeSmallPlotFile() 1 3.053e-05 5.726e-05 7.16e-05 0.00% Castro::finalize_advance() 10 6.037e-05 6.553e-05 7.027e-05 0.00% FabArrayBase::CPC::define() 2 2.411e-05 2.779e-05 3.516e-05 0.00% Castro::enforce_speed_limit() 62 2.706e-05 3.06e-05 3.494e-05 0.00% Gravity::swapTimeLevels() 10 8.256e-06 1.304e-05 1.582e-05 0.00% Castro::FluxRegCrseInit 10 7.823e-06 9.909e-06 1.299e-05 0.00% Castro::create_source_corrector() 10 7.185e-06 9.932e-06 1.251e-05 0.00% Gravity::set_mass_offset() 10 6.554e-06 9.091e-06 1.089e-05 0.00% Amr::initSubcycle() 1 8.507e-06 9.147e-06 9.855e-06 0.00% Castro::retry_advance_ctu() 10 4.788e-06 6.079e-06 7.438e-06 0.00% Castro::FluxRegFineAdd() 10 1.882e-06 2.205e-06 2.594e-06 0.00% DistributionMapping::Distribute() 1 8.46e-07 1.159e-06 1.548e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.06-51-g8fb23ec17a58) finalized