MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.07-3-gdc8b734b6a70) initialized Starting run at 05:38:18 UTC on 2022-07-04. Successfully read inputs file ... Castro git describe: 22.06-15-gd68821af9 AMReX git describe: 22.07-3-gdc8b734b6 Microphysics git describe: 22.07-2-gf9115a92 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.067696563 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.349756291 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.337261501 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.337123657 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.336822041 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.343051087 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.337796116 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.33325578 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.333155081 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.336107873 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.336558292 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009909459 seconds Ending run at 05:38:22 UTC on 2022-07-04. Run time = 3.665325405 Run time without initialization = 3.396944733 Average number of zones advanced per microsecond: 0.772 Average number of zones advanced per microsecond per rank: 0.096 TinyProfiler total time across processes [min...avg...max]: 3.663 ... 3.665 ... 3.665 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.0715 2.3672 2.4706 67.40% Castro::do_advance_ctu() 10 0.03425 0.138 0.4356 11.88% Gravity::make_radial_gravity() 21 0.3409 0.3542 0.3806 10.38% Castro::initData() 1 0.03826 0.08524 0.1473 4.02% Castro::estTimeStep() 21 0.02326 0.09103 0.1362 3.72% FabArray::ParallelCopy_finish() 41 0.03331 0.05762 0.129 3.52% FabArray::setVal() 143 0.04983 0.06592 0.07063 1.93% Amr::writePlotFile() 2 0.06286 0.06555 0.06632 1.81% Castro::reset_internal_energy(Fab) 1008 0.04559 0.04934 0.05213 1.42% FabArray::ParallelCopy_nowait() 41 0.02588 0.04362 0.04913 1.34% StateData::FillBoundary(geom) 41 0.03609 0.04134 0.04539 1.24% Castro::normalize_species() 62 0.03904 0.04133 0.04281 1.17% FillPatchIterator::Initialize 41 0.0208 0.03318 0.03748 1.02% Gravity::interpolate_monopole_grav() 21 0.02633 0.02763 0.02855 0.78% Castro::construct_new_gravity_source() 10 0.01901 0.02258 0.02381 0.65% Castro::expand_state() 10 0.00957 0.01837 0.0221 0.60% Castro::computeTemp() 63 0.01661 0.01856 0.02 0.55% Castro::initialize_do_advance() 10 0.009093 0.01638 0.01822 0.50% MultiFab::Saxpy() 20 0.008674 0.01432 0.01631 0.45% VisMF::Write(FabArray) 2 0.01196 0.01251 0.01496 0.41% FabArray::setDomainBndry() 41 0.004743 0.01039 0.01276 0.35% Gravity::get_new_grav_vector() 11 0.007494 0.01122 0.01262 0.34% MultiFab::contains_nan() 20 0.009362 0.01097 0.01196 0.33% Castro::construct_old_gravity_source() 10 0.004935 0.0101 0.01186 0.32% Gravity::get_old_grav_vector() 10 0.005242 0.009242 0.01073 0.29% Castro::initialize_advance() 10 0.003296 0.008655 0.009551 0.26% Castro::initMFs() 1 0.005525 0.006486 0.008769 0.24% Castro::construct_new_source() 50 0.004765 0.006533 0.00718 0.20% Castro::enforce_min_density() 62 0.005893 0.006668 0.00716 0.20% StateData::define() 4 0.004568 0.005191 0.00671 0.18% main() 1 0.003207 0.004775 0.005542 0.15% Castro::swap_state_time_levels() 10 0.003129 0.003754 0.003966 0.11% Amr::coarseTimeStep() 10 0.0007895 0.001765 0.003197 0.09% Castro::buildMetrics() 1 0.001301 0.00149 0.001924 0.05% Castro::finalize_do_advance() 10 0.0005235 0.0009589 0.001097 0.03% Amr::InitAmr() 1 0.0002586 0.0003345 0.0004687 0.01% Amr::timeStep() 10 0.0001637 0.0002318 0.000466 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0003057 0.0003127 0.0003239 0.01% DistributionMapping::LeastUsedCPUs() 1 8.19e-06 0.0001656 0.000247 0.01% Castro::clean_state() 62 0.0001581 0.0001692 0.0001785 0.00% StateDataPhysBCFunct::() 41 0.0001052 0.0001307 0.0001471 0.00% FabArray::ParallelCopy() 41 7.805e-05 8.75e-05 9.463e-05 0.00% Castro::construct_old_source() 50 4.82e-05 7.438e-05 9.297e-05 0.00% Castro::enforce_consistent_e() 1 8.128e-05 8.685e-05 9.27e-05 0.00% Castro::do_new_sources() 10 4.77e-05 7.109e-05 8.393e-05 0.00% Castro::Castro() 1 5.004e-05 6.389e-05 8.362e-05 0.00% Castro::do_old_sources() 10 4.187e-05 6.692e-05 8.224e-05 0.00% FillPatchSingleLevel 41 6.601e-05 7.093e-05 8.024e-05 0.00% Amr::writeSmallPlotFile() 1 2.413e-05 5.803e-05 7.057e-05 0.00% Amr::FinalizeInit() 1 3.98e-06 1.332e-05 6.687e-05 0.00% FabArrayBase::getCPC() 41 5.465e-05 5.941e-05 6.295e-05 0.00% Castro::construct_old_gravity() 10 3.394e-05 5.168e-05 6.271e-05 0.00% Castro::apply_source_to_state() 20 4.257e-05 5.25e-05 6.206e-05 0.00% Castro::construct_new_gravity() 10 3.984e-05 4.705e-05 5.861e-05 0.00% Castro::finalize_advance() 10 4.627e-05 5.306e-05 5.77e-05 0.00% Castro::subcycle_advance_ctu() 10 3.458e-05 4.787e-05 5.465e-05 0.00% Castro::advance() 10 3.475e-05 4.246e-05 5.067e-05 0.00% Castro::enforce_speed_limit() 62 2.846e-05 3.173e-05 3.479e-05 0.00% FabArrayBase::CPC::define() 2 2.142e-05 2.628e-05 3.11e-05 0.00% Amr::defBaseLevel() 1 1.767e-05 2.225e-05 2.749e-05 0.00% Castro::check_for_nan() 20 2.178e-05 2.378e-05 2.649e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.115e-05 1.606e-05 2.114e-05 0.00% Castro::post_timestep() 10 1.208e-05 1.399e-05 1.76e-05 0.00% Gravity::swapTimeLevels() 10 4.865e-06 1.152e-05 1.476e-05 0.00% Amr::initSubcycle() 1 7.813e-06 9.844e-06 1.426e-05 0.00% Castro::create_source_corrector() 10 5.437e-06 1.017e-05 1.389e-05 0.00% Gravity::set_mass_offset() 10 7.699e-06 1.001e-05 1.161e-05 0.00% Castro::FluxRegCrseInit 10 6.576e-06 9.549e-06 1.157e-05 0.00% Castro::computeNewDt() 9 6.797e-06 8.759e-06 1.022e-05 0.00% Castro::post_regrid() 1 1.677e-06 3.347e-06 8.28e-06 0.00% Castro::post_init() 1 2.61e-06 4.589e-06 8.219e-06 0.00% Castro::retry_advance_ctu() 10 5.075e-06 6.609e-06 7.93e-06 0.00% Amr::InitializeInit() 1 2.418e-06 5.04e-06 7.919e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.578e-06 4.48e-06 5.769e-06 0.00% Castro::computeInitialDt() 2 3.418e-06 4.119e-06 5.618e-06 0.00% Amr::init() 1 1.661e-06 2.181e-06 2.963e-06 0.00% Castro::FluxRegFineAdd() 10 1.843e-06 2.497e-06 2.797e-06 0.00% Amr::initialInit() 1 1.27e-06 1.596e-06 2.061e-06 0.00% DistributionMapping::Distribute() 1 9.15e-07 1.105e-06 1.458e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.663 3.665 3.665 100.00% Amr::coarseTimeStep() 10 3.382 3.382 3.382 92.26% Amr::timeStep() 10 3.37 3.372 3.373 92.02% Castro::advance() 10 3.355 3.356 3.356 91.56% Castro::subcycle_advance_ctu() 10 3.284 3.289 3.305 90.17% Castro::do_advance_ctu() 10 3.284 3.289 3.305 90.17% Castro::construct_ctu_hydro_source() 10 2.071 2.367 2.471 67.40% Gravity::make_radial_gravity() 21 0.3409 0.3542 0.3806 10.38% Amr::init() 1 0.2678 0.2679 0.268 7.31% Gravity::get_new_grav_vector() 11 0.2292 0.2318 0.2345 6.40% Castro::construct_old_gravity() 10 0.2001 0.2118 0.2324 6.34% Gravity::get_old_grav_vector() 10 0.1992 0.2111 0.2318 6.33% FillPatchIterator::Initialize 41 0.1742 0.1865 0.2172 5.93% Castro::construct_new_gravity() 10 0.204 0.2055 0.2077 5.67% Amr::initialInit() 1 0.1997 0.1998 0.2 5.46% FillPatchSingleLevel 41 0.1251 0.143 0.1917 5.23% Castro::initialize_do_advance() 10 0.1599 0.1678 0.1744 4.76% Amr::InitializeInit() 1 0.05631 0.1047 0.1701 4.64% Amr::defBaseLevel() 1 0.0563 0.1047 0.1701 4.64% FabArray::ParallelCopy() 41 0.0819 0.1014 0.1551 4.23% Castro::initData() 1 0.0422 0.08913 0.1509 4.12% Amr::FinalizeInit() 1 0.0296 0.09514 0.1437 3.92% Castro::estTimeStep() 21 0.02326 0.09103 0.1362 3.72% Castro::expand_state() 10 0.1132 0.1214 0.1292 3.53% FabArray::ParallelCopy_finish() 41 0.03331 0.05762 0.129 3.52% Castro::clean_state() 62 0.1076 0.1155 0.1206 3.29% Castro::computeInitialDt() 2 0.001577 0.06721 0.1157 3.16% Amr::writePlotFile() 2 0.07782 0.07806 0.07828 2.14% Castro::computeTemp() 63 0.06313 0.06821 0.07245 1.98% Castro::initialize_advance() 10 0.0503 0.06691 0.07137 1.95% FabArray::setVal() 143 0.04983 0.06592 0.07063 1.93% Castro::do_new_sources() 10 0.05143 0.06224 0.06532 1.78% Castro::reset_internal_energy(MultiFab) 63 0.04591 0.04965 0.05245 1.43% Castro::reset_internal_energy(Fab) 1008 0.04559 0.04934 0.05213 1.42% Castro::do_old_sources() 10 0.03235 0.04512 0.04922 1.34% FabArray::ParallelCopy_nowait() 41 0.02597 0.0437 0.04921 1.34% StateDataPhysBCFunct::() 41 0.03621 0.04147 0.04552 1.24% StateData::FillBoundary(geom) 41 0.03609 0.04134 0.04539 1.24% Castro::normalize_species() 62 0.03904 0.04133 0.04281 1.17% Castro::construct_new_source() 50 0.02377 0.02911 0.03093 0.84% Gravity::interpolate_monopole_grav() 21 0.02633 0.02763 0.02855 0.78% Castro::post_init() 1 0.02671 0.02717 0.02743 0.75% Castro::construct_new_gravity_source() 10 0.01901 0.02258 0.02381 0.65% Castro::post_timestep() 10 0.01441 0.01572 0.01667 0.45% Castro::apply_source_to_state() 20 0.008734 0.01437 0.01637 0.45% MultiFab::Saxpy() 20 0.008674 0.01432 0.01631 0.45% VisMF::Write(FabArray) 2 0.01196 0.01251 0.01496 0.41% FabArray::setDomainBndry() 41 0.004743 0.01039 0.01276 0.35% Castro::Castro() 1 0.00921 0.01014 0.0125 0.34% Castro::check_for_nan() 20 0.009385 0.01099 0.01199 0.33% MultiFab::contains_nan() 20 0.009362 0.01097 0.01196 0.33% Castro::construct_old_source() 50 0.004983 0.01017 0.01195 0.33% Castro::construct_old_gravity_source() 10 0.004935 0.0101 0.01186 0.32% Castro::initMFs() 1 0.005525 0.006486 0.008769 0.24% Castro::enforce_min_density() 62 0.005893 0.006668 0.00716 0.20% Castro::computeNewDt() 9 0.007052 0.00706 0.007072 0.19% AmrLevel::AmrLevel(dm) 1 0.004579 0.005207 0.006731 0.18% StateData::define() 4 0.004568 0.005191 0.00671 0.18% Castro::swap_state_time_levels() 10 0.003129 0.003754 0.003966 0.11% Castro::buildMetrics() 1 0.001423 0.001634 0.002137 0.06% Castro::post_regrid() 1 0.001512 0.001675 0.002025 0.06% Castro::finalize_do_advance() 10 0.0005235 0.0009589 0.001097 0.03% Amr::InitAmr() 1 0.0002671 0.0003444 0.000483 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.367e-05 0.0001712 0.0002534 0.01% DistributionMapping::LeastUsedCPUs() 1 8.19e-06 0.0001656 0.000247 0.01% Castro::enforce_consistent_e() 1 8.128e-05 8.685e-05 9.27e-05 0.00% FabArrayBase::getCPC() 41 8.011e-05 8.569e-05 9.109e-05 0.00% Amr::writeSmallPlotFile() 1 2.413e-05 5.803e-05 7.057e-05 0.00% Castro::finalize_advance() 10 5.469e-05 6.511e-05 7.052e-05 0.00% Castro::enforce_speed_limit() 62 2.846e-05 3.173e-05 3.479e-05 0.00% FabArrayBase::CPC::define() 2 2.142e-05 2.628e-05 3.11e-05 0.00% Gravity::swapTimeLevels() 10 4.865e-06 1.152e-05 1.476e-05 0.00% Amr::initSubcycle() 1 7.813e-06 9.844e-06 1.426e-05 0.00% Castro::create_source_corrector() 10 5.437e-06 1.017e-05 1.389e-05 0.00% Gravity::set_mass_offset() 10 7.699e-06 1.001e-05 1.161e-05 0.00% Castro::FluxRegCrseInit 10 6.576e-06 9.549e-06 1.157e-05 0.00% Castro::retry_advance_ctu() 10 5.075e-06 6.609e-06 7.93e-06 0.00% Castro::FluxRegFineAdd() 10 1.843e-06 2.497e-06 2.797e-06 0.00% DistributionMapping::Distribute() 1 9.15e-07 1.105e-06 1.458e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.07-3-gdc8b734b6a70) finalized