MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.07-4-gcbdc6580ee3d) initialized Starting run at 05:38:04 UTC on 2022-07-06. Successfully read inputs file ... Castro git describe: 22.06-15-gd68821af9 AMReX git describe: 22.07-4-gcbdc6580e Microphysics git describe: 22.07-6-g94202288 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016498937 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.384447531 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.340727308 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.340827298 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.340207482 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.346051631 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.339278087 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.344789388 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.327143597 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.327241683 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.327449868 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010644276 seconds Ending run at 05:38:07 UTC on 2022-07-06. Run time = 3.648622245 Run time without initialization = 3.435312082 Average number of zones advanced per microsecond: 0.763 Average number of zones advanced per microsecond per rank: 0.095 TinyProfiler total time across processes [min...avg...max]: 3.647 ... 3.648 ... 3.649 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1617 2.3758 2.4511 67.18% Gravity::make_radial_gravity() 21 0.3624 0.3757 0.4008 10.98% Castro::do_advance_ctu() 10 0.06027 0.1373 0.3542 9.71% Castro::initData() 1 0.03821 0.08755 0.1349 3.70% Castro::estTimeStep() 21 0.03049 0.07339 0.1226 3.36% FabArray::ParallelCopy_finish() 41 0.03886 0.0624 0.119 3.26% FabArray::setVal() 143 0.05561 0.06841 0.07257 1.99% Castro::reset_internal_energy(Fab) 1008 0.05013 0.05127 0.05393 1.48% StateData::FillBoundary(geom) 41 0.03574 0.04284 0.05003 1.37% FabArray::ParallelCopy_nowait() 41 0.02763 0.04311 0.04877 1.34% Castro::normalize_species() 62 0.04066 0.04228 0.04516 1.24% FillPatchIterator::Initialize 41 0.0219 0.03366 0.03891 1.07% Gravity::interpolate_monopole_grav() 21 0.02713 0.02798 0.02954 0.81% Castro::construct_new_gravity_source() 10 0.01999 0.02338 0.02512 0.69% Castro::expand_state() 10 0.009838 0.01863 0.02223 0.61% Castro::computeTemp() 63 0.01853 0.01974 0.02125 0.58% Castro::initialize_do_advance() 10 0.00934 0.01718 0.0201 0.55% Amr::writePlotFile() 2 0.01177 0.01603 0.01766 0.48% MultiFab::Saxpy() 20 0.01045 0.01481 0.01651 0.45% VisMF::Write(FabArray) 2 0.01051 0.0119 0.01564 0.43% Gravity::get_new_grav_vector() 11 0.007349 0.01151 0.01297 0.36% MultiFab::contains_nan() 20 0.01011 0.0113 0.01222 0.33% Castro::construct_old_gravity_source() 10 0.005087 0.01026 0.01211 0.33% FabArray::setDomainBndry() 41 0.005188 0.01007 0.0121 0.33% Gravity::get_old_grav_vector() 10 0.005728 0.009576 0.01173 0.32% Castro::initialize_advance() 10 0.01044 0.01108 0.01167 0.32% Castro::initMFs() 1 0.005452 0.006417 0.008701 0.24% Castro::enforce_min_density() 62 0.006228 0.006865 0.007476 0.20% Castro::construct_new_source() 50 0.005059 0.006633 0.007241 0.20% StateData::define() 4 0.004491 0.005133 0.006637 0.18% main() 1 0.003648 0.005411 0.005905 0.16% Castro::swap_state_time_levels() 10 0.003588 0.004137 0.005066 0.14% Amr::coarseTimeStep() 10 0.000879 0.001224 0.002044 0.06% Castro::buildMetrics() 1 0.001285 0.001472 0.001938 0.05% Castro::finalize_do_advance() 10 0.0005769 0.001027 0.001182 0.03% Amr::InitAmr() 1 0.0002633 0.0003351 0.0006011 0.02% Amr::timeStep() 10 0.0001695 0.0002388 0.0005014 0.01% DistributionMapping::LeastUsedCPUs() 1 9.355e-06 0.0003213 0.0003965 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002943 0.0003165 0.0003416 0.01% Castro::clean_state() 62 0.0001378 0.0001649 0.0001856 0.01% StateDataPhysBCFunct::() 41 9.57e-05 0.0001291 0.0001491 0.00% Castro::enforce_consistent_e() 1 8.254e-05 0.0001008 0.0001369 0.00% FabArray::ParallelCopy() 41 7.388e-05 8.624e-05 9.409e-05 0.00% Castro::construct_old_source() 50 3.958e-05 6.894e-05 8.69e-05 0.00% Castro::do_old_sources() 10 4.26e-05 6.672e-05 8.559e-05 0.00% Castro::do_new_sources() 10 4.388e-05 7.06e-05 8.495e-05 0.00% Amr::FinalizeInit() 1 3.923e-06 1.465e-05 8.218e-05 0.00% Castro::Castro() 1 5.422e-05 6.504e-05 7.936e-05 0.00% FillPatchSingleLevel 41 6.265e-05 6.829e-05 7.484e-05 0.00% Amr::writeSmallPlotFile() 1 2.393e-05 5.42e-05 6.989e-05 0.00% FabArrayBase::getCPC() 41 4.221e-05 5.701e-05 6.824e-05 0.00% Castro::subcycle_advance_ctu() 10 3.722e-05 5.133e-05 6.801e-05 0.00% Castro::construct_old_gravity() 10 3.246e-05 5.268e-05 6.626e-05 0.00% Castro::finalize_advance() 10 4.974e-05 5.535e-05 5.83e-05 0.00% Castro::apply_source_to_state() 20 4.266e-05 5.067e-05 5.713e-05 0.00% Castro::advance() 10 3.268e-05 4.333e-05 5.59e-05 0.00% Castro::construct_new_gravity() 10 3.751e-05 4.336e-05 4.677e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.494e-05 2.235e-05 3.695e-05 0.00% Castro::enforce_speed_limit() 62 2.399e-05 3.146e-05 3.564e-05 0.00% Amr::defBaseLevel() 1 1.723e-05 2.449e-05 3.558e-05 0.00% FabArrayBase::CPC::define() 2 2.189e-05 2.84e-05 3.467e-05 0.00% Castro::check_for_nan() 20 1.915e-05 2.238e-05 2.372e-05 0.00% Gravity::swapTimeLevels() 10 8.399e-06 1.295e-05 1.694e-05 0.00% Castro::post_timestep() 10 1.161e-05 1.318e-05 1.54e-05 0.00% Castro::create_source_corrector() 10 6.642e-06 1.072e-05 1.434e-05 0.00% Amr::InitializeInit() 1 2.163e-06 3.968e-06 1.418e-05 0.00% Amr::initSubcycle() 1 8.066e-06 9.852e-06 1.373e-05 0.00% Castro::FluxRegCrseInit 10 6.581e-06 9.299e-06 1.127e-05 0.00% Gravity::set_mass_offset() 10 6.528e-06 8.905e-06 1.052e-05 0.00% Castro::computeNewDt() 9 6.982e-06 8.643e-06 9.747e-06 0.00% Castro::retry_advance_ctu() 10 5.984e-06 7.185e-06 9.138e-06 0.00% Amr::initialInit() 1 1.945e-06 2.791e-06 7.424e-06 0.00% Amr::init() 1 2.052e-06 2.906e-06 5.944e-06 0.00% Castro::post_init() 1 2.716e-06 3.988e-06 5.76e-06 0.00% Castro::computeInitialDt() 2 3.302e-06 4.496e-06 5.472e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.481e-06 4.241e-06 5.254e-06 0.00% Castro::post_regrid() 1 1.602e-06 3.123e-06 4.934e-06 0.00% Castro::FluxRegFineAdd() 10 2.158e-06 2.476e-06 2.918e-06 0.00% DistributionMapping::Distribute() 1 9.83e-07 1.173e-06 1.53e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.646 3.648 3.649 100.00% Amr::coarseTimeStep() 10 3.419 3.419 3.419 93.70% Amr::timeStep() 10 3.408 3.409 3.41 93.45% Castro::advance() 10 3.393 3.393 3.393 93.00% Castro::subcycle_advance_ctu() 10 3.317 3.321 3.33 91.26% Castro::do_advance_ctu() 10 3.317 3.321 3.33 91.26% Castro::construct_ctu_hydro_source() 10 2.162 2.376 2.451 67.18% Gravity::make_radial_gravity() 21 0.3624 0.3757 0.4008 10.98% Castro::construct_old_gravity() 10 0.2165 0.2258 0.2451 6.72% Gravity::get_old_grav_vector() 10 0.2156 0.2251 0.2445 6.70% Gravity::get_new_grav_vector() 11 0.2402 0.2423 0.2439 6.69% Amr::init() 1 0.2125 0.2128 0.2129 5.84% FillPatchIterator::Initialize 41 0.1834 0.1924 0.2116 5.80% Castro::construct_new_gravity() 10 0.2027 0.2045 0.2059 5.64% Amr::initialInit() 1 0.1948 0.1956 0.1963 5.38% FillPatchSingleLevel 41 0.1328 0.1487 0.1845 5.06% Castro::initialize_do_advance() 10 0.1599 0.1721 0.1793 4.91% Amr::InitializeInit() 1 0.05642 0.1075 0.1543 4.23% Amr::defBaseLevel() 1 0.05641 0.1074 0.1543 4.23% FabArray::ParallelCopy() 41 0.08669 0.1057 0.1468 4.02% Amr::FinalizeInit() 1 0.04141 0.08817 0.1395 3.82% Castro::initData() 1 0.04221 0.09186 0.1389 3.81% Castro::expand_state() 10 0.1182 0.1237 0.127 3.48% Castro::clean_state() 62 0.1154 0.1196 0.1259 3.45% Castro::estTimeStep() 21 0.03049 0.07339 0.1226 3.36% FabArray::ParallelCopy_finish() 41 0.03886 0.0624 0.119 3.26% Castro::computeInitialDt() 2 0.002177 0.049 0.1001 2.74% Castro::initialize_advance() 10 0.06327 0.07216 0.07622 2.09% Castro::computeTemp() 63 0.06917 0.07132 0.07521 2.06% FabArray::setVal() 143 0.05561 0.06841 0.07257 1.99% Castro::do_new_sources() 10 0.05478 0.06375 0.06605 1.81% Castro::reset_internal_energy(MultiFab) 63 0.05044 0.05158 0.05427 1.49% Castro::reset_internal_energy(Fab) 1008 0.05013 0.05127 0.05393 1.48% Castro::do_old_sources() 10 0.03532 0.04657 0.0514 1.41% StateDataPhysBCFunct::() 41 0.03583 0.04297 0.05015 1.37% StateData::FillBoundary(geom) 41 0.03574 0.04284 0.05003 1.37% FabArray::ParallelCopy_nowait() 41 0.02772 0.04319 0.04885 1.34% Castro::normalize_species() 62 0.04066 0.04228 0.04516 1.24% Castro::post_init() 1 0.03801 0.03857 0.03912 1.07% Castro::construct_new_source() 50 0.02505 0.03002 0.03225 0.88% Gravity::interpolate_monopole_grav() 21 0.02713 0.02798 0.02954 0.81% Amr::writePlotFile() 2 0.02718 0.02793 0.02879 0.79% Castro::construct_new_gravity_source() 10 0.01999 0.02338 0.02512 0.69% Castro::apply_source_to_state() 20 0.0105 0.01486 0.01656 0.45% MultiFab::Saxpy() 20 0.01045 0.01481 0.01651 0.45% Castro::post_timestep() 10 0.01555 0.0159 0.01629 0.45% VisMF::Write(FabArray) 2 0.01051 0.0119 0.01564 0.43% Castro::Castro() 1 0.00908 0.01008 0.01247 0.34% Castro::check_for_nan() 20 0.01013 0.01132 0.01224 0.34% MultiFab::contains_nan() 20 0.01011 0.0113 0.01222 0.33% Castro::construct_old_source() 50 0.005127 0.01033 0.01219 0.33% Castro::construct_old_gravity_source() 10 0.005087 0.01026 0.01211 0.33% FabArray::setDomainBndry() 41 0.005188 0.01007 0.0121 0.33% Castro::initMFs() 1 0.005452 0.006417 0.008701 0.24% Castro::enforce_min_density() 62 0.006228 0.006865 0.007476 0.20% Castro::computeNewDt() 9 0.007071 0.007079 0.007085 0.19% AmrLevel::AmrLevel(dm) 1 0.004507 0.005156 0.006665 0.18% StateData::define() 4 0.004491 0.005133 0.006637 0.18% Castro::swap_state_time_levels() 10 0.003588 0.004137 0.005066 0.14% Castro::post_regrid() 1 0.001531 0.001961 0.002972 0.08% Castro::buildMetrics() 1 0.001398 0.001623 0.002169 0.06% Castro::finalize_do_advance() 10 0.0005769 0.001027 0.001182 0.03% Amr::InitAmr() 1 0.000272 0.000345 0.0006149 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.461e-05 0.0003267 0.000403 0.01% DistributionMapping::LeastUsedCPUs() 1 9.355e-06 0.0003213 0.0003965 0.01% Castro::enforce_consistent_e() 1 8.254e-05 0.0001008 0.0001369 0.00% FabArrayBase::getCPC() 41 6.941e-05 8.541e-05 0.0001029 0.00% Castro::finalize_advance() 10 5.924e-05 6.712e-05 7.031e-05 0.00% Amr::writeSmallPlotFile() 1 2.393e-05 5.42e-05 6.989e-05 0.00% Castro::enforce_speed_limit() 62 2.399e-05 3.146e-05 3.564e-05 0.00% FabArrayBase::CPC::define() 2 2.189e-05 2.84e-05 3.467e-05 0.00% Gravity::swapTimeLevels() 10 8.399e-06 1.295e-05 1.694e-05 0.00% Castro::create_source_corrector() 10 6.642e-06 1.072e-05 1.434e-05 0.00% Amr::initSubcycle() 1 8.066e-06 9.852e-06 1.373e-05 0.00% Castro::FluxRegCrseInit 10 6.581e-06 9.299e-06 1.127e-05 0.00% Gravity::set_mass_offset() 10 6.528e-06 8.905e-06 1.052e-05 0.00% Castro::retry_advance_ctu() 10 5.984e-06 7.185e-06 9.138e-06 0.00% Castro::FluxRegFineAdd() 10 2.158e-06 2.476e-06 2.918e-06 0.00% DistributionMapping::Distribute() 1 9.83e-07 1.173e-06 1.53e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.07-4-gcbdc6580ee3d) finalized