MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.07-5-g557aae84902f) initialized Starting run at 05:37:56 UTC on 2022-07-08. Successfully read inputs file ... Castro git describe: 22.07-1-g2377b4709 AMReX git describe: 22.07-5-g557aae849 Microphysics git describe: 22.07-8-g51acf48d reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016220094 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.349456961 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.335977095 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.336944903 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.336664113 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.344083403 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.342627377 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.332263628 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.333019596 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.333323998 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.333857161 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009583313 seconds Ending run at 05:37:59 UTC on 2022-07-08. Run time = 3.63249486 Run time without initialization = 3.393793327 Average number of zones advanced per microsecond: 0.772 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.63 ... 3.632 ... 3.633 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.0656 2.3513 2.4639 67.83% Castro::do_advance_ctu() 10 0.03105 0.1456 0.4335 11.93% Gravity::make_radial_gravity() 21 0.3453 0.3621 0.3883 10.69% Castro::initData() 1 0.03792 0.0868 0.1554 4.28% Castro::estTimeStep() 21 0.02428 0.1011 0.1547 4.26% FabArray::ParallelCopy_finish() 41 0.03891 0.06207 0.1319 3.63% FabArray::setVal() 143 0.05442 0.06623 0.06968 1.92% Castro::reset_internal_energy(Fab) 1008 0.04559 0.05019 0.05444 1.50% FabArray::ParallelCopy_nowait() 41 0.0258 0.04309 0.04965 1.37% StateData::FillBoundary(geom) 41 0.03607 0.04228 0.04871 1.34% Castro::normalize_species() 62 0.03933 0.04155 0.0434 1.19% FillPatchIterator::Initialize 41 0.02102 0.0335 0.03901 1.07% Gravity::interpolate_monopole_grav() 21 0.02574 0.02765 0.02873 0.79% Castro::construct_new_gravity_source() 10 0.01902 0.02259 0.02364 0.65% Castro::expand_state() 10 0.009667 0.01828 0.02148 0.59% Castro::computeTemp() 63 0.01717 0.01904 0.02094 0.58% Castro::initialize_do_advance() 10 0.009252 0.01676 0.01956 0.54% Amr::writePlotFile() 2 0.01081 0.01494 0.01673 0.46% MultiFab::Saxpy() 20 0.008686 0.01424 0.01607 0.44% VisMF::Write(FabArray) 2 0.01097 0.01197 0.01524 0.42% Gravity::get_new_grav_vector() 11 0.007077 0.01098 0.01284 0.35% FabArray::setDomainBndry() 41 0.004905 0.01027 0.01221 0.34% MultiFab::contains_nan() 20 0.00928 0.01089 0.01206 0.33% Castro::construct_old_gravity_source() 10 0.004985 0.01012 0.01163 0.32% Gravity::get_old_grav_vector() 10 0.00533 0.009251 0.01074 0.30% Castro::initialize_advance() 10 0.003274 0.008684 0.009774 0.27% Castro::initMFs() 1 0.005388 0.006379 0.008446 0.23% Castro::enforce_min_density() 62 0.005889 0.0068 0.007324 0.20% Castro::construct_new_source() 50 0.004766 0.006494 0.00722 0.20% StateData::define() 4 0.004576 0.005279 0.006697 0.18% main() 1 0.003265 0.004719 0.005391 0.15% Castro::swap_state_time_levels() 10 0.003206 0.003846 0.005121 0.14% Amr::coarseTimeStep() 10 0.0009351 0.001685 0.003649 0.10% Castro::buildMetrics() 1 0.001292 0.001501 0.001925 0.05% Castro::finalize_do_advance() 10 0.0005516 0.001071 0.001256 0.03% Amr::InitAmr() 1 0.0002593 0.0003352 0.0005903 0.02% Amr::timeStep() 10 0.0001738 0.0002342 0.0005012 0.01% DistributionMapping::LeastUsedCPUs() 1 7.907e-06 0.000304 0.0003864 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0003046 0.0003142 0.0003313 0.01% Castro::clean_state() 62 0.0001484 0.0001629 0.0001836 0.01% StateDataPhysBCFunct::() 41 8.818e-05 0.0001211 0.0001514 0.00% Castro::enforce_consistent_e() 1 8.083e-05 9.861e-05 0.0001421 0.00% FabArray::ParallelCopy() 41 6.792e-05 8.726e-05 0.0001009 0.00% Castro::construct_old_source() 50 3.45e-05 7.216e-05 8.748e-05 0.00% Castro::Castro() 1 5.276e-05 6.693e-05 8.605e-05 0.00% Castro::do_new_sources() 10 4.811e-05 7.038e-05 8.479e-05 0.00% Castro::do_old_sources() 10 4.357e-05 6.793e-05 8.254e-05 0.00% FillPatchSingleLevel 41 6.045e-05 6.815e-05 7.493e-05 0.00% Amr::FinalizeInit() 1 3.506e-06 1.352e-05 7.282e-05 0.00% Amr::writeSmallPlotFile() 1 2.457e-05 4.716e-05 6.978e-05 0.00% Castro::advance() 10 3.275e-05 4.36e-05 6.906e-05 0.00% FabArrayBase::getCPC() 41 4.628e-05 5.724e-05 6.518e-05 0.00% Castro::construct_old_gravity() 10 3.108e-05 5.249e-05 6.402e-05 0.00% Castro::apply_source_to_state() 20 3.228e-05 5.046e-05 6.034e-05 0.00% Castro::subcycle_advance_ctu() 10 3.553e-05 4.864e-05 5.74e-05 0.00% Castro::finalize_advance() 10 4.678e-05 5.151e-05 5.537e-05 0.00% Castro::construct_new_gravity() 10 3.305e-05 4.474e-05 5.117e-05 0.00% FabArrayBase::CPC::define() 2 2.118e-05 2.877e-05 3.92e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.513e-05 2.791e-05 3.654e-05 0.00% Castro::enforce_speed_limit() 62 2.324e-05 3.003e-05 3.575e-05 0.00% Amr::defBaseLevel() 1 1.658e-05 2.024e-05 2.466e-05 0.00% Castro::check_for_nan() 20 1.997e-05 2.219e-05 2.356e-05 0.00% Gravity::swapTimeLevels() 10 7.854e-06 1.385e-05 1.786e-05 0.00% Amr::InitializeInit() 1 2.232e-06 5.586e-06 1.693e-05 0.00% Castro::create_source_corrector() 10 5.619e-06 1.044e-05 1.502e-05 0.00% Castro::post_timestep() 10 1.058e-05 1.254e-05 1.402e-05 0.00% Amr::initSubcycle() 1 8.112e-06 9.928e-06 1.393e-05 0.00% Castro::FluxRegCrseInit 10 5.066e-06 8.544e-06 1.169e-05 0.00% Gravity::set_mass_offset() 10 6.054e-06 9.607e-06 1.164e-05 0.00% Castro::computeNewDt() 9 6.422e-06 8.565e-06 1.018e-05 0.00% Castro::retry_advance_ctu() 10 4.87e-06 6.565e-06 8.353e-06 0.00% Castro::post_regrid() 1 1.47e-06 3.301e-06 7.109e-06 0.00% Castro::computeInitialDt() 2 3.383e-06 4.322e-06 5.646e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.75e-06 4.29e-06 5.113e-06 0.00% Castro::post_init() 1 2.386e-06 3.47e-06 4.635e-06 0.00% Castro::FluxRegFineAdd() 10 1.75e-06 2.417e-06 3.296e-06 0.00% Amr::init() 1 1.493e-06 2.038e-06 2.348e-06 0.00% Amr::initialInit() 1 1.06e-06 1.566e-06 1.945e-06 0.00% DistributionMapping::Distribute() 1 8.81e-07 1.123e-06 1.507e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.63 3.632 3.633 100.00% Amr::coarseTimeStep() 10 3.379 3.379 3.379 93.02% Amr::timeStep() 10 3.367 3.369 3.369 92.76% Castro::advance() 10 3.352 3.353 3.353 92.30% Castro::subcycle_advance_ctu() 10 3.279 3.285 3.297 90.77% Castro::do_advance_ctu() 10 3.279 3.285 3.297 90.77% Castro::construct_ctu_hydro_source() 10 2.066 2.351 2.464 67.83% Gravity::make_radial_gravity() 21 0.3453 0.3621 0.3883 10.69% Gravity::get_new_grav_vector() 11 0.2363 0.2408 0.2424 6.67% Amr::init() 1 0.238 0.2382 0.2383 6.56% Castro::construct_old_gravity() 10 0.1987 0.2117 0.2309 6.36% Gravity::get_old_grav_vector() 10 0.1979 0.211 0.2303 6.34% Amr::initialInit() 1 0.2203 0.221 0.2216 6.10% FillPatchIterator::Initialize 41 0.1821 0.1916 0.22 6.06% Castro::construct_new_gravity() 10 0.1998 0.2033 0.2045 5.63% FillPatchSingleLevel 41 0.1324 0.1478 0.194 5.34% Amr::InitializeInit() 1 0.05613 0.1066 0.1797 4.95% Amr::defBaseLevel() 1 0.05613 0.1066 0.1797 4.95% Castro::initialize_do_advance() 10 0.1611 0.1724 0.1794 4.94% Amr::FinalizeInit() 1 0.0418 0.1144 0.1642 4.52% Castro::initData() 1 0.04178 0.09104 0.1606 4.42% FabArray::ParallelCopy() 41 0.08819 0.1053 0.1578 4.34% Castro::estTimeStep() 21 0.02428 0.1011 0.1547 4.26% FabArray::ParallelCopy_finish() 41 0.03891 0.06207 0.1319 3.63% Castro::expand_state() 10 0.1191 0.1253 0.1302 3.58% Castro::computeInitialDt() 2 0.00239 0.07558 0.1262 3.47% Castro::clean_state() 62 0.1078 0.117 0.1238 3.41% Castro::computeTemp() 63 0.06306 0.06955 0.07571 2.08% Castro::initialize_advance() 10 0.05464 0.06772 0.07355 2.02% FabArray::setVal() 143 0.05442 0.06623 0.06968 1.92% Castro::do_new_sources() 10 0.0513 0.06226 0.0647 1.78% Castro::reset_internal_energy(MultiFab) 63 0.04589 0.05051 0.05477 1.51% Castro::reset_internal_energy(Fab) 1008 0.04559 0.05019 0.05444 1.50% FabArray::ParallelCopy_nowait() 41 0.02588 0.04318 0.04974 1.37% Castro::do_old_sources() 10 0.03233 0.04508 0.04904 1.35% StateDataPhysBCFunct::() 41 0.03615 0.04241 0.04884 1.34% StateData::FillBoundary(geom) 41 0.03607 0.04228 0.04871 1.34% Castro::normalize_species() 62 0.03933 0.04155 0.0434 1.19% Castro::post_init() 1 0.03766 0.03814 0.03867 1.06% Castro::construct_new_source() 50 0.02378 0.02909 0.03061 0.84% Gravity::interpolate_monopole_grav() 21 0.02574 0.02765 0.02873 0.79% Amr::writePlotFile() 2 0.02605 0.02691 0.0277 0.76% Castro::construct_new_gravity_source() 10 0.01902 0.02259 0.02364 0.65% Castro::post_timestep() 10 0.01441 0.01585 0.01664 0.46% Castro::apply_source_to_state() 20 0.008718 0.01429 0.01612 0.44% MultiFab::Saxpy() 20 0.008686 0.01424 0.01607 0.44% VisMF::Write(FabArray) 2 0.01097 0.01197 0.01524 0.42% FabArray::setDomainBndry() 41 0.004905 0.01027 0.01221 0.34% Castro::Castro() 1 0.008758 0.009944 0.01221 0.34% Castro::check_for_nan() 20 0.009303 0.01091 0.01208 0.33% MultiFab::contains_nan() 20 0.00928 0.01089 0.01206 0.33% Castro::construct_old_source() 50 0.00502 0.01019 0.01172 0.32% Castro::construct_old_gravity_source() 10 0.004985 0.01012 0.01163 0.32% Castro::initMFs() 1 0.005388 0.006379 0.008446 0.23% Castro::enforce_min_density() 62 0.005889 0.0068 0.007324 0.20% Castro::computeNewDt() 9 0.007239 0.00725 0.007259 0.20% AmrLevel::AmrLevel(dm) 1 0.004593 0.005307 0.006734 0.19% StateData::define() 4 0.004576 0.005279 0.006697 0.18% Castro::swap_state_time_levels() 10 0.003206 0.003846 0.005121 0.14% Castro::post_regrid() 1 0.001521 0.001958 0.002916 0.08% Castro::buildMetrics() 1 0.001412 0.001648 0.00215 0.06% Castro::finalize_do_advance() 10 0.0005516 0.001071 0.001256 0.03% Amr::InitAmr() 1 0.000268 0.0003452 0.000604 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.368e-05 0.0003094 0.0003923 0.01% DistributionMapping::LeastUsedCPUs() 1 7.907e-06 0.000304 0.0003864 0.01% Castro::enforce_consistent_e() 1 8.083e-05 9.861e-05 0.0001421 0.00% FabArrayBase::getCPC() 41 7.804e-05 8.601e-05 0.0001044 0.00% Amr::writeSmallPlotFile() 1 2.457e-05 4.716e-05 6.978e-05 0.00% Castro::finalize_advance() 10 5.573e-05 6.247e-05 6.927e-05 0.00% FabArrayBase::CPC::define() 2 2.118e-05 2.877e-05 3.92e-05 0.00% Castro::enforce_speed_limit() 62 2.324e-05 3.003e-05 3.575e-05 0.00% Gravity::swapTimeLevels() 10 7.854e-06 1.385e-05 1.786e-05 0.00% Castro::create_source_corrector() 10 5.619e-06 1.044e-05 1.502e-05 0.00% Amr::initSubcycle() 1 8.112e-06 9.928e-06 1.393e-05 0.00% Castro::FluxRegCrseInit 10 5.066e-06 8.544e-06 1.169e-05 0.00% Gravity::set_mass_offset() 10 6.054e-06 9.607e-06 1.164e-05 0.00% Castro::retry_advance_ctu() 10 4.87e-06 6.565e-06 8.353e-06 0.00% Castro::FluxRegFineAdd() 10 1.75e-06 2.417e-06 3.296e-06 0.00% DistributionMapping::Distribute() 1 8.81e-07 1.123e-06 1.507e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.07-5-g557aae84902f) finalized