MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.07-8-ga633d2bff1db) initialized Starting run at 05:38:08 UTC on 2022-07-11. Successfully read inputs file ... Castro git describe: 22.07-2-gb650c4446 AMReX git describe: 22.07-8-ga633d2bff Microphysics git describe: 22.07-8-g51acf48d reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.013817304 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.357750697 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.34296185 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.339776956 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.344193189 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.353571358 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.347349106 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.334973921 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.335153145 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.334419151 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.335894165 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009820482 seconds Ending run at 05:38:11 UTC on 2022-07-11. Run time = 3.617482089 Run time without initialization = 3.441807701 Average number of zones advanced per microsecond: 0.762 Average number of zones advanced per microsecond per rank: 0.095 TinyProfiler total time across processes [min...avg...max]: 3.616 ... 3.617 ... 3.618 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1190 2.3948 2.4966 69.02% Castro::do_advance_ctu() 10 0.03596 0.1415 0.4203 11.62% Gravity::make_radial_gravity() 21 0.3368 0.3505 0.3768 10.42% FabArray::ParallelCopy_finish() 41 0.03876 0.05927 0.1189 3.29% Castro::initData() 1 0.03817 0.07702 0.1152 3.18% Castro::estTimeStep() 21 0.02798 0.06795 0.1073 2.97% FabArray::setVal() 143 0.06103 0.06901 0.07197 1.99% Castro::reset_internal_energy(Fab) 1008 0.0478 0.04976 0.05226 1.44% FabArray::ParallelCopy_nowait() 41 0.02575 0.04347 0.0495 1.37% StateData::FillBoundary(geom) 41 0.03615 0.04184 0.04599 1.27% Castro::normalize_species() 62 0.04035 0.04202 0.0433 1.20% FillPatchIterator::Initialize 41 0.02093 0.03306 0.03772 1.04% Gravity::interpolate_monopole_grav() 21 0.02665 0.02772 0.02859 0.79% Castro::construct_new_gravity_source() 10 0.02017 0.02351 0.02782 0.77% Castro::expand_state() 10 0.009628 0.01842 0.02166 0.60% Castro::computeTemp() 63 0.01776 0.01901 0.02016 0.56% Castro::initialize_do_advance() 10 0.00867 0.01658 0.01865 0.52% MultiFab::Saxpy() 20 0.008787 0.01446 0.01628 0.45% VisMF::Write(FabArray) 2 0.01081 0.01186 0.01414 0.39% Gravity::get_new_grav_vector() 11 0.00741 0.01132 0.0139 0.38% Amr::writePlotFile() 2 0.009719 0.01232 0.01301 0.36% MultiFab::contains_nan() 20 0.009886 0.01135 0.0124 0.34% FabArray::setDomainBndry() 41 0.004816 0.01028 0.01233 0.34% Castro::construct_old_gravity_source() 10 0.004876 0.01003 0.01168 0.32% Castro::initialize_advance() 10 0.009495 0.01053 0.0109 0.30% Gravity::get_old_grav_vector() 10 0.00553 0.00956 0.01084 0.30% Castro::initMFs() 1 0.005344 0.006203 0.009464 0.26% Castro::enforce_min_density() 62 0.006071 0.00681 0.007337 0.20% Castro::construct_new_source() 50 0.004886 0.006683 0.007085 0.20% StateData::define() 4 0.004503 0.005116 0.006693 0.19% main() 1 0.00327 0.004931 0.005295 0.15% Castro::swap_state_time_levels() 10 0.002636 0.003586 0.003876 0.11% Amr::coarseTimeStep() 10 0.0009438 0.001467 0.00261 0.07% Castro::buildMetrics() 1 0.001277 0.001455 0.00191 0.05% Castro::finalize_do_advance() 10 0.0005346 0.001073 0.001244 0.03% Amr::InitAmr() 1 0.0002643 0.0003343 0.0006125 0.02% Amr::timeStep() 10 0.0001844 0.0002389 0.0004806 0.01% DistributionMapping::LeastUsedCPUs() 1 8.866e-06 0.0003431 0.0004229 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0003039 0.0003189 0.0003467 0.01% Castro::clean_state() 62 0.0001446 0.0001677 0.0001804 0.00% StateDataPhysBCFunct::() 41 0.0001334 0.0001414 0.0001506 0.00% Castro::enforce_consistent_e() 1 7.539e-05 8.544e-05 0.0001056 0.00% FabArray::ParallelCopy() 41 7.798e-05 8.509e-05 9.441e-05 0.00% Castro::do_new_sources() 10 4.692e-05 6.86e-05 8.82e-05 0.00% Castro::construct_old_source() 50 3.713e-05 7.25e-05 8.778e-05 0.00% Castro::Castro() 1 4.958e-05 6.018e-05 8.156e-05 0.00% FillPatchSingleLevel 41 6.193e-05 6.89e-05 7.739e-05 0.00% Castro::do_old_sources() 10 4.436e-05 6.555e-05 7.546e-05 0.00% FabArrayBase::getCPC() 41 5.771e-05 6.509e-05 7.413e-05 0.00% Castro::apply_source_to_state() 20 4.588e-05 5.713e-05 7.371e-05 0.00% Amr::writeSmallPlotFile() 1 2.407e-05 5.627e-05 6.958e-05 0.00% Castro::construct_old_gravity() 10 3.711e-05 5.426e-05 6.842e-05 0.00% Castro::subcycle_advance_ctu() 10 4.457e-05 5.138e-05 6.462e-05 0.00% Amr::FinalizeInit() 1 4.15e-06 1.202e-05 6.258e-05 0.00% Castro::finalize_advance() 10 5.039e-05 5.523e-05 6.159e-05 0.00% Castro::construct_new_gravity() 10 3.895e-05 4.76e-05 5.321e-05 0.00% Castro::advance() 10 3.83e-05 4.521e-05 4.809e-05 0.00% Castro::enforce_speed_limit() 62 2.844e-05 3.317e-05 4.05e-05 0.00% FabArrayBase::CPC::define() 2 2.202e-05 2.573e-05 3.353e-05 0.00% Amr::defBaseLevel() 1 1.853e-05 2.358e-05 2.729e-05 0.00% Castro::check_for_nan() 20 1.942e-05 2.312e-05 2.505e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.326e-05 1.744e-05 2.401e-05 0.00% Gravity::set_mass_offset() 10 7.093e-06 1.02e-05 1.688e-05 0.00% Castro::FluxRegCrseInit 10 7.578e-06 1.208e-05 1.64e-05 0.00% Gravity::swapTimeLevels() 10 5.114e-06 1.17e-05 1.487e-05 0.00% Castro::post_timestep() 10 1.124e-05 1.272e-05 1.433e-05 0.00% Castro::create_source_corrector() 10 6.101e-06 1.093e-05 1.382e-05 0.00% Amr::initSubcycle() 1 7.999e-06 9.609e-06 1.368e-05 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.488e-06 4.895e-06 1.065e-05 0.00% Castro::computeNewDt() 9 6.972e-06 8.807e-06 1.055e-05 0.00% Amr::InitializeInit() 1 2.014e-06 3.559e-06 8.97e-06 0.00% Castro::post_init() 1 2.897e-06 4.634e-06 8.417e-06 0.00% Castro::retry_advance_ctu() 10 5.929e-06 7.142e-06 7.977e-06 0.00% Castro::computeInitialDt() 2 3.356e-06 4.562e-06 5.125e-06 0.00% Castro::post_regrid() 1 1.567e-06 2.918e-06 3.857e-06 0.00% Amr::init() 1 1.729e-06 2.058e-06 2.862e-06 0.00% Castro::FluxRegFineAdd() 10 2.09e-06 2.464e-06 2.686e-06 0.00% Amr::initialInit() 1 1.214e-06 1.504e-06 1.932e-06 0.00% DistributionMapping::Distribute() 1 8.84e-07 1.178e-06 1.807e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.616 3.617 3.617 100.00% Amr::coarseTimeStep() 10 3.427 3.427 3.427 94.73% Amr::timeStep() 10 3.416 3.417 3.418 94.47% Castro::advance() 10 3.4 3.401 3.401 94.01% Castro::subcycle_advance_ctu() 10 3.327 3.329 3.334 92.16% Castro::do_advance_ctu() 10 3.327 3.329 3.334 92.16% Castro::construct_ctu_hydro_source() 10 2.119 2.395 2.497 69.02% Gravity::make_radial_gravity() 21 0.3368 0.3505 0.3768 10.42% Castro::construct_old_gravity() 10 0.1995 0.2121 0.2322 6.42% Gravity::get_old_grav_vector() 10 0.1987 0.2113 0.2317 6.40% Gravity::get_new_grav_vector() 11 0.2256 0.2283 0.2293 6.34% FillPatchIterator::Initialize 41 0.1784 0.1883 0.2069 5.72% Castro::construct_new_gravity() 10 0.202 0.2041 0.2053 5.68% FillPatchSingleLevel 41 0.1293 0.145 0.1812 5.01% Castro::initialize_do_advance() 10 0.1571 0.1711 0.1798 4.97% Amr::init() 1 0.1749 0.1752 0.1753 4.85% Amr::initialInit() 1 0.1606 0.1609 0.1617 4.47% FabArray::ParallelCopy() 41 0.08702 0.1029 0.1448 4.00% Amr::InitializeInit() 1 0.05621 0.0963 0.1337 3.70% Amr::defBaseLevel() 1 0.05621 0.09629 0.1337 3.70% Castro::expand_state() 10 0.1176 0.124 0.1307 3.61% Castro::clean_state() 62 0.1116 0.1172 0.1226 3.39% Castro::initData() 1 0.04203 0.08088 0.1189 3.29% FabArray::ParallelCopy_finish() 41 0.03876 0.05927 0.1189 3.29% Castro::estTimeStep() 21 0.02798 0.06795 0.1073 2.97% Amr::FinalizeInit() 1 0.02692 0.06463 0.1045 2.89% Castro::computeInitialDt() 2 0.001737 0.03907 0.07923 2.19% Castro::initialize_advance() 10 0.06612 0.0718 0.07392 2.04% Castro::computeTemp() 63 0.0659 0.06909 0.07277 2.01% FabArray::setVal() 143 0.06103 0.06901 0.07197 1.99% Castro::do_new_sources() 10 0.05401 0.06364 0.06752 1.87% Castro::reset_internal_energy(MultiFab) 63 0.04813 0.05008 0.05261 1.45% Castro::reset_internal_energy(Fab) 1008 0.0478 0.04976 0.05226 1.44% FabArray::ParallelCopy_nowait() 41 0.02586 0.04356 0.04958 1.37% Castro::do_old_sources() 10 0.03272 0.04532 0.04938 1.36% StateDataPhysBCFunct::() 41 0.03628 0.04198 0.04613 1.28% StateData::FillBoundary(geom) 41 0.03615 0.04184 0.04599 1.27% Castro::normalize_species() 62 0.04035 0.04202 0.0433 1.20% Castro::construct_new_source() 50 0.02506 0.03019 0.03433 0.95% Gravity::interpolate_monopole_grav() 21 0.02665 0.02772 0.02859 0.79% Castro::construct_new_gravity_source() 10 0.02017 0.02351 0.02782 0.77% Castro::post_init() 1 0.02454 0.02492 0.02561 0.71% Amr::writePlotFile() 2 0.02348 0.02418 0.02456 0.68% Castro::post_timestep() 10 0.01557 0.01615 0.01662 0.46% Castro::apply_source_to_state() 20 0.008833 0.01452 0.01634 0.45% MultiFab::Saxpy() 20 0.008787 0.01446 0.01628 0.45% VisMF::Write(FabArray) 2 0.01081 0.01186 0.01414 0.39% Castro::Castro() 1 0.009172 0.009907 0.01265 0.35% Castro::check_for_nan() 20 0.00991 0.01138 0.01242 0.34% MultiFab::contains_nan() 20 0.009886 0.01135 0.0124 0.34% FabArray::setDomainBndry() 41 0.004816 0.01028 0.01233 0.34% Castro::construct_old_source() 50 0.004913 0.01011 0.01176 0.33% Castro::construct_old_gravity_source() 10 0.004876 0.01003 0.01168 0.32% Castro::initMFs() 1 0.005344 0.006203 0.009464 0.26% Castro::enforce_min_density() 62 0.006071 0.00681 0.007337 0.20% Castro::computeNewDt() 9 0.00727 0.00728 0.007288 0.20% AmrLevel::AmrLevel(dm) 1 0.004527 0.005133 0.006713 0.19% StateData::define() 4 0.004503 0.005116 0.006693 0.19% Castro::swap_state_time_levels() 10 0.002636 0.003586 0.003876 0.11% Castro::buildMetrics() 1 0.001395 0.001602 0.002126 0.06% Castro::post_regrid() 1 0.001546 0.00158 0.001613 0.04% Castro::finalize_do_advance() 10 0.0005346 0.001073 0.001244 0.03% Amr::InitAmr() 1 0.0002728 0.0003439 0.0006262 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.412e-05 0.0003492 0.0004296 0.01% DistributionMapping::LeastUsedCPUs() 1 8.866e-06 0.0003431 0.0004229 0.01% FabArrayBase::getCPC() 41 7.976e-05 9.082e-05 0.0001077 0.00% Castro::enforce_consistent_e() 1 7.539e-05 8.544e-05 0.0001056 0.00% Castro::finalize_advance() 10 6.006e-05 6.977e-05 7.948e-05 0.00% Amr::writeSmallPlotFile() 1 2.407e-05 5.627e-05 6.958e-05 0.00% Castro::enforce_speed_limit() 62 2.844e-05 3.317e-05 4.05e-05 0.00% FabArrayBase::CPC::define() 2 2.202e-05 2.573e-05 3.353e-05 0.00% Gravity::set_mass_offset() 10 7.093e-06 1.02e-05 1.688e-05 0.00% Castro::FluxRegCrseInit 10 7.578e-06 1.208e-05 1.64e-05 0.00% Gravity::swapTimeLevels() 10 5.114e-06 1.17e-05 1.487e-05 0.00% Castro::create_source_corrector() 10 6.101e-06 1.093e-05 1.382e-05 0.00% Amr::initSubcycle() 1 7.999e-06 9.609e-06 1.368e-05 0.00% Castro::retry_advance_ctu() 10 5.929e-06 7.142e-06 7.977e-06 0.00% Castro::FluxRegFineAdd() 10 2.09e-06 2.464e-06 2.686e-06 0.00% DistributionMapping::Distribute() 1 8.84e-07 1.178e-06 1.807e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.07-8-ga633d2bff1db) finalized