MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.07-8-ga633d2bff1db) initialized Starting run at 05:39:58 UTC on 2022-07-12. Successfully read inputs file ... Castro git describe: 22.07-2-gb650c4446 AMReX git describe: 22.07-8-ga633d2bff Microphysics git describe: 22.07-8-g51acf48d reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015053884 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.361265153 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.338691093 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.339428606 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.342151983 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.344810964 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.351891177 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.335301084 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.340045195 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.33504404 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.334766359 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010147212 seconds Ending run at 05:40:01 UTC on 2022-07-12. Run time = 3.616528646 Run time without initialization = 3.439106068 Average number of zones advanced per microsecond: 0.762 Average number of zones advanced per microsecond per rank: 0.095 TinyProfiler total time across processes [min...avg...max]: 3.615 ... 3.616 ... 3.617 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1252 2.3870 2.4757 68.45% Castro::do_advance_ctu() 10 0.05512 0.1447 0.4093 11.32% Gravity::make_radial_gravity() 21 0.3385 0.3526 0.3756 10.38% Castro::initData() 1 0.03965 0.08113 0.1141 3.16% FabArray::ParallelCopy_finish() 41 0.04242 0.05991 0.1129 3.12% Castro::estTimeStep() 21 0.02414 0.05848 0.09801 2.71% FabArray::setVal() 143 0.06174 0.07054 0.07293 2.02% Castro::reset_internal_energy(Fab) 1008 0.04996 0.05094 0.05233 1.45% FabArray::ParallelCopy_nowait() 41 0.02723 0.04349 0.04908 1.36% StateData::FillBoundary(geom) 41 0.03544 0.04196 0.04573 1.26% Castro::normalize_species() 62 0.04029 0.04157 0.04232 1.17% FillPatchIterator::Initialize 41 0.02156 0.03315 0.03722 1.03% Gravity::interpolate_monopole_grav() 21 0.02679 0.02777 0.02826 0.78% Castro::construct_new_gravity_source() 10 0.01737 0.02285 0.02513 0.69% Castro::expand_state() 10 0.009676 0.01856 0.02162 0.60% Castro::computeTemp() 63 0.01844 0.01948 0.01999 0.55% Castro::initialize_do_advance() 10 0.009305 0.01694 0.01963 0.54% MultiFab::Saxpy() 20 0.01056 0.01464 0.01629 0.45% VisMF::Write(FabArray) 2 0.01163 0.0125 0.01552 0.43% Amr::writePlotFile() 2 0.009877 0.01246 0.0135 0.37% Gravity::get_new_grav_vector() 11 0.008566 0.01157 0.01287 0.36% MultiFab::contains_nan() 20 0.01032 0.01154 0.01282 0.35% FabArray::setDomainBndry() 41 0.004967 0.01027 0.01231 0.34% Castro::construct_old_gravity_source() 10 0.004839 0.01028 0.01208 0.33% Gravity::get_old_grav_vector() 10 0.005678 0.009879 0.01124 0.31% Castro::initialize_advance() 10 0.01066 0.01081 0.01108 0.31% Castro::enforce_min_density() 62 0.00622 0.006786 0.007214 0.20% Castro::construct_new_source() 50 0.005034 0.00656 0.007081 0.20% Castro::initMFs() 1 0.00539 0.005829 0.006558 0.18% Amr::coarseTimeStep() 10 0.002152 0.003944 0.00542 0.15% StateData::define() 4 0.004521 0.004799 0.005078 0.14% main() 1 0.00351 0.004489 0.004801 0.13% Castro::swap_state_time_levels() 10 0.003043 0.003958 0.004283 0.12% Castro::buildMetrics() 1 0.00126 0.001332 0.001445 0.04% Castro::finalize_do_advance() 10 0.0005369 0.001037 0.001171 0.03% Amr::timeStep() 10 0.0001748 0.000255 0.0005183 0.01% Amr::InitAmr() 1 0.0002759 0.0003028 0.0003809 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0003088 0.0003305 0.0003679 0.01% Castro::clean_state() 62 0.0001551 0.0001645 0.0001714 0.00% StateDataPhysBCFunct::() 41 0.0001126 0.0001329 0.0001485 0.00% Castro::computeNewDt() 9 9.175e-06 3.234e-05 0.0001463 0.00% DistributionMapping::LeastUsedCPUs() 1 7.738e-06 0.0001049 0.0001372 0.00% FabArray::ParallelCopy() 41 8.202e-05 8.869e-05 0.0001064 0.00% Castro::construct_old_source() 50 3.852e-05 7.183e-05 9.672e-05 0.00% Castro::Castro() 1 5.683e-05 7.546e-05 9.584e-05 0.00% Castro::enforce_consistent_e() 1 8.243e-05 8.993e-05 9.493e-05 0.00% Castro::do_new_sources() 10 4.999e-05 7.277e-05 8.485e-05 0.00% Amr::FinalizeInit() 1 3.228e-06 1.45e-05 8.28e-05 0.00% Castro::do_old_sources() 10 4.38e-05 6.711e-05 8.252e-05 0.00% FillPatchSingleLevel 41 6.626e-05 7.28e-05 7.899e-05 0.00% Amr::writeSmallPlotFile() 1 2.496e-05 5.893e-05 7.229e-05 0.00% FabArrayBase::getCPC() 41 5.353e-05 6.098e-05 7.103e-05 0.00% Castro::subcycle_advance_ctu() 10 3.95e-05 4.824e-05 6.724e-05 0.00% Castro::apply_source_to_state() 20 4.544e-05 5.445e-05 6.694e-05 0.00% Castro::construct_old_gravity() 10 4.011e-05 5.447e-05 6.101e-05 0.00% Castro::finalize_advance() 10 5.369e-05 5.617e-05 5.906e-05 0.00% Castro::advance() 10 4.257e-05 5.031e-05 5.417e-05 0.00% Castro::construct_new_gravity() 10 3.891e-05 4.835e-05 5.082e-05 0.00% Castro::enforce_speed_limit() 62 3.453e-05 3.645e-05 4.077e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.287e-05 2.007e-05 3.467e-05 0.00% FabArrayBase::CPC::define() 2 2.315e-05 2.608e-05 3.313e-05 0.00% Amr::defBaseLevel() 1 1.698e-05 2.137e-05 2.935e-05 0.00% Castro::post_timestep() 10 1.135e-05 1.525e-05 2.719e-05 0.00% Castro::check_for_nan() 20 2.07e-05 2.282e-05 2.631e-05 0.00% Gravity::set_mass_offset() 10 6.539e-06 1.118e-05 1.738e-05 0.00% Castro::FluxRegCrseInit 10 7.274e-06 1.14e-05 1.67e-05 0.00% Gravity::swapTimeLevels() 10 7.695e-06 1.232e-05 1.503e-05 0.00% Amr::initSubcycle() 1 8.155e-06 9.662e-06 1.423e-05 0.00% Castro::create_source_corrector() 10 6.977e-06 1.051e-05 1.231e-05 0.00% Castro::retry_advance_ctu() 10 6.002e-06 7.099e-06 8.37e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.86e-06 5.017e-06 7.047e-06 0.00% Amr::InitializeInit() 1 2.101e-06 3.042e-06 6.971e-06 0.00% Castro::computeInitialDt() 2 3.222e-06 4.224e-06 5.251e-06 0.00% Castro::post_init() 1 3.001e-06 3.571e-06 4.123e-06 0.00% Castro::post_regrid() 1 1.643e-06 2.441e-06 3.515e-06 0.00% Castro::FluxRegFineAdd() 10 2.143e-06 2.654e-06 3.211e-06 0.00% Amr::init() 1 1.842e-06 2.198e-06 2.672e-06 0.00% Amr::initialInit() 1 1.463e-06 1.733e-06 2.139e-06 0.00% DistributionMapping::Distribute() 1 9.76e-07 1.215e-06 1.721e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.615 3.616 3.617 100.00% Amr::coarseTimeStep() 10 3.424 3.424 3.424 94.68% Amr::timeStep() 10 3.409 3.41 3.412 94.34% Castro::advance() 10 3.393 3.394 3.394 93.84% Castro::subcycle_advance_ctu() 10 3.319 3.32 3.323 91.88% Castro::do_advance_ctu() 10 3.319 3.32 3.323 91.88% Castro::construct_ctu_hydro_source() 10 2.125 2.387 2.476 68.45% Gravity::make_radial_gravity() 21 0.3385 0.3526 0.3756 10.38% Gravity::get_new_grav_vector() 11 0.2304 0.232 0.2331 6.45% Castro::construct_old_gravity() 10 0.1998 0.2118 0.2285 6.32% Gravity::get_old_grav_vector() 10 0.1989 0.211 0.228 6.30% Castro::construct_new_gravity() 10 0.2039 0.2052 0.206 5.70% FillPatchIterator::Initialize 41 0.1827 0.1892 0.204 5.64% Castro::initialize_do_advance() 10 0.157 0.1723 0.1817 5.02% FillPatchSingleLevel 41 0.1337 0.1457 0.1775 4.91% Amr::init() 1 0.1769 0.177 0.177 4.89% Amr::initialInit() 1 0.1617 0.1622 0.1625 4.49% FabArray::ParallelCopy() 41 0.09038 0.1036 0.1403 3.88% Castro::expand_state() 10 0.1169 0.1248 0.1325 3.66% Amr::InitializeInit() 1 0.05766 0.09989 0.1322 3.66% Amr::defBaseLevel() 1 0.05765 0.09989 0.1322 3.66% Castro::clean_state() 62 0.1148 0.1183 0.1209 3.34% Castro::initData() 1 0.04388 0.08528 0.1184 3.27% FabArray::ParallelCopy_finish() 41 0.04242 0.05991 0.1129 3.12% Amr::FinalizeInit() 1 0.02982 0.06235 0.1041 2.88% Castro::estTimeStep() 21 0.02414 0.05848 0.09801 2.71% Castro::computeInitialDt() 2 0.00174 0.03405 0.07619 2.11% Castro::initialize_advance() 10 0.0704 0.07306 0.07483 2.07% FabArray::setVal() 143 0.06174 0.07054 0.07293 2.02% Castro::computeTemp() 63 0.06889 0.07076 0.0726 2.01% Castro::do_new_sources() 10 0.05238 0.06309 0.06661 1.84% Castro::reset_internal_energy(MultiFab) 63 0.05029 0.05127 0.05267 1.46% Castro::reset_internal_energy(Fab) 1008 0.04996 0.05094 0.05233 1.45% Castro::do_old_sources() 10 0.03468 0.04641 0.0503 1.39% FabArray::ParallelCopy_nowait() 41 0.02733 0.04358 0.04916 1.36% StateDataPhysBCFunct::() 41 0.03557 0.04209 0.04588 1.27% StateData::FillBoundary(geom) 41 0.03544 0.04196 0.04573 1.26% Castro::normalize_species() 62 0.04029 0.04157 0.04232 1.17% Castro::construct_new_source() 50 0.0224 0.02941 0.03215 0.89% Gravity::interpolate_monopole_grav() 21 0.02679 0.02777 0.02826 0.78% Castro::post_init() 1 0.02706 0.02753 0.02784 0.77% Amr::writePlotFile() 2 0.02469 0.02496 0.02539 0.70% Castro::construct_new_gravity_source() 10 0.01737 0.02285 0.02513 0.69% Castro::post_timestep() 10 0.01553 0.01646 0.01814 0.50% Castro::apply_source_to_state() 20 0.01062 0.0147 0.01634 0.45% MultiFab::Saxpy() 20 0.01056 0.01464 0.01629 0.45% VisMF::Write(FabArray) 2 0.01163 0.0125 0.01552 0.43% Castro::check_for_nan() 20 0.01034 0.01156 0.01284 0.36% MultiFab::contains_nan() 20 0.01032 0.01154 0.01282 0.35% FabArray::setDomainBndry() 41 0.004967 0.01027 0.01231 0.34% Castro::construct_old_source() 50 0.004879 0.01036 0.01218 0.34% Castro::construct_old_gravity_source() 10 0.004839 0.01028 0.01208 0.33% Castro::Castro() 1 0.009065 0.009657 0.01051 0.29% Castro::computeNewDt() 9 0.00873 0.009076 0.009194 0.25% Castro::enforce_min_density() 62 0.00622 0.006786 0.007214 0.20% Castro::initMFs() 1 0.00539 0.005829 0.006558 0.18% AmrLevel::AmrLevel(dm) 1 0.004533 0.004819 0.005096 0.14% StateData::define() 4 0.004521 0.004799 0.005078 0.14% Castro::swap_state_time_levels() 10 0.003043 0.003958 0.004283 0.12% Castro::post_regrid() 1 0.001581 0.001708 0.001875 0.05% Castro::buildMetrics() 1 0.001379 0.001463 0.001605 0.04% Castro::finalize_do_advance() 10 0.0005369 0.001037 0.001171 0.03% Amr::InitAmr() 1 0.000285 0.0003124 0.000389 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.541e-05 0.0001111 0.000144 0.00% DistributionMapping::LeastUsedCPUs() 1 7.738e-06 0.0001049 0.0001372 0.00% FabArrayBase::getCPC() 41 7.81e-05 8.706e-05 0.0001042 0.00% Castro::enforce_consistent_e() 1 8.243e-05 8.993e-05 9.493e-05 0.00% Castro::finalize_advance() 10 6.444e-05 7.022e-05 7.772e-05 0.00% Amr::writeSmallPlotFile() 1 2.496e-05 5.893e-05 7.229e-05 0.00% Castro::enforce_speed_limit() 62 3.453e-05 3.645e-05 4.077e-05 0.00% FabArrayBase::CPC::define() 2 2.315e-05 2.608e-05 3.313e-05 0.00% Gravity::set_mass_offset() 10 6.539e-06 1.118e-05 1.738e-05 0.00% Castro::FluxRegCrseInit 10 7.274e-06 1.14e-05 1.67e-05 0.00% Gravity::swapTimeLevels() 10 7.695e-06 1.232e-05 1.503e-05 0.00% Amr::initSubcycle() 1 8.155e-06 9.662e-06 1.423e-05 0.00% Castro::create_source_corrector() 10 6.977e-06 1.051e-05 1.231e-05 0.00% Castro::retry_advance_ctu() 10 6.002e-06 7.099e-06 8.37e-06 0.00% Castro::FluxRegFineAdd() 10 2.143e-06 2.654e-06 3.211e-06 0.00% DistributionMapping::Distribute() 1 9.76e-07 1.215e-06 1.721e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.07-8-ga633d2bff1db) finalized