MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.07-8-ga633d2bff1db) initialized Starting run at 05:38:26 UTC on 2022-07-13. Successfully read inputs file ... Castro git describe: 22.07-2-gb650c4446 AMReX git describe: 22.07-8-ga633d2bff Microphysics git describe: 22.07-8-g51acf48d reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.013689674 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.360169041 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.3447594 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.340482825 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.341776516 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.350091316 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.345143588 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.334888875 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.336077911 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.336706596 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.335736161 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.03535357 seconds Ending run at 05:38:30 UTC on 2022-07-13. Run time = 3.643877132 Run time without initialization = 3.467160346 Average number of zones advanced per microsecond: 0.756 Average number of zones advanced per microsecond per rank: 0.095 TinyProfiler total time across processes [min...avg...max]: 3.642 ... 3.643 ... 3.644 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.0693 2.3762 2.4941 68.45% Castro::do_advance_ctu() 10 0.03876 0.1573 0.4684 12.86% Gravity::make_radial_gravity() 21 0.3406 0.3535 0.3716 10.20% Castro::initData() 1 0.05135 0.08651 0.1141 3.13% FabArray::ParallelCopy_finish() 41 0.03641 0.05653 0.1034 2.84% Castro::estTimeStep() 21 0.02644 0.05187 0.08247 2.26% FabArray::setVal() 143 0.06687 0.07091 0.07331 2.01% Castro::reset_internal_energy(Fab) 1008 0.04935 0.05038 0.05204 1.43% FabArray::ParallelCopy_nowait() 41 0.03071 0.04416 0.04928 1.35% StateData::FillBoundary(geom) 41 0.03587 0.04183 0.04602 1.26% Castro::normalize_species() 62 0.03961 0.04184 0.04343 1.19% Amr::writePlotFile() 2 0.03526 0.03785 0.03865 1.06% FillPatchIterator::Initialize 41 0.02203 0.03391 0.03798 1.04% Gravity::interpolate_monopole_grav() 21 0.0256 0.02734 0.02824 0.78% Castro::construct_new_gravity_source() 10 0.02344 0.02376 0.02399 0.66% Castro::expand_state() 10 0.01201 0.01953 0.02261 0.62% Castro::computeTemp() 63 0.01837 0.01919 0.0198 0.54% Castro::initialize_do_advance() 10 0.01144 0.01718 0.01932 0.53% MultiFab::Saxpy() 20 0.01133 0.01493 0.01649 0.45% VisMF::Write(FabArray) 2 0.01055 0.0116 0.014 0.38% Gravity::get_new_grav_vector() 11 0.009365 0.01162 0.01258 0.35% FabArray::setDomainBndry() 41 0.005841 0.01065 0.01248 0.34% MultiFab::contains_nan() 20 0.01033 0.01133 0.01241 0.34% Castro::construct_old_gravity_source() 10 0.007017 0.01073 0.01217 0.33% Castro::initialize_advance() 10 0.01047 0.01078 0.01108 0.30% Gravity::get_old_grav_vector() 10 0.006164 0.00959 0.01106 0.30% Castro::initMFs() 1 0.00545 0.006828 0.008175 0.22% Castro::enforce_min_density() 62 0.006459 0.006836 0.007318 0.20% Castro::construct_new_source() 50 0.005291 0.00665 0.007292 0.20% StateData::define() 4 0.004503 0.005642 0.006626 0.18% main() 1 0.003191 0.004637 0.005388 0.15% Castro::swap_state_time_levels() 10 0.00304 0.003977 0.004451 0.12% Amr::coarseTimeStep() 10 0.0008398 0.001691 0.003418 0.09% Castro::buildMetrics() 1 0.001295 0.001631 0.001913 0.05% Castro::finalize_do_advance() 10 0.00128 0.001524 0.001712 0.05% Amr::InitAmr() 1 0.0002523 0.0003736 0.000602 0.02% Amr::timeStep() 10 0.0001755 0.0002332 0.0004639 0.01% DistributionMapping::LeastUsedCPUs() 1 7.836e-06 0.000263 0.0003993 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0003059 0.0003186 0.0003321 0.01% Castro::clean_state() 62 0.0001517 0.0001855 0.0002198 0.01% StateDataPhysBCFunct::() 41 0.0001254 0.000135 0.0001494 0.00% FabArray::ParallelCopy() 41 8.044e-05 9.074e-05 9.853e-05 0.00% Castro::do_old_sources() 10 4.428e-05 7.392e-05 9.734e-05 0.00% Castro::construct_old_source() 50 4.314e-05 7.842e-05 9.723e-05 0.00% Castro::enforce_consistent_e() 1 8.357e-05 8.861e-05 9.641e-05 0.00% Amr::FinalizeInit() 1 3.551e-06 1.534e-05 9.275e-05 0.00% Castro::do_new_sources() 10 4.657e-05 7.231e-05 9.01e-05 0.00% FillPatchSingleLevel 41 6.531e-05 7.054e-05 7.696e-05 0.00% FabArrayBase::getCPC() 41 5.572e-05 6.406e-05 7.284e-05 0.00% Castro::Castro() 1 4.881e-05 6.236e-05 7.261e-05 0.00% Castro::advance() 10 3.322e-05 4.828e-05 7.166e-05 0.00% Amr::writeSmallPlotFile() 1 2.443e-05 5.118e-05 7.002e-05 0.00% Castro::construct_old_gravity() 10 3.362e-05 5.442e-05 6.8e-05 0.00% Castro::apply_source_to_state() 20 3.601e-05 5.205e-05 6.454e-05 0.00% Castro::subcycle_advance_ctu() 10 3.325e-05 4.668e-05 5.736e-05 0.00% Castro::finalize_advance() 10 5.022e-05 5.298e-05 5.629e-05 0.00% Castro::construct_new_gravity() 10 3.929e-05 4.861e-05 5.583e-05 0.00% Castro::enforce_speed_limit() 62 2.499e-05 3.143e-05 4.361e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.161e-05 1.842e-05 3.188e-05 0.00% FabArrayBase::CPC::define() 2 2.465e-05 2.72e-05 3.181e-05 0.00% Amr::defBaseLevel() 1 1.666e-05 2.223e-05 3.045e-05 0.00% Castro::check_for_nan() 20 2.046e-05 2.238e-05 2.49e-05 0.00% Castro::computeNewDt() 9 7.145e-06 1.058e-05 2.123e-05 0.00% Gravity::swapTimeLevels() 10 7.105e-06 1.205e-05 1.515e-05 0.00% Castro::post_timestep() 10 1.069e-05 1.301e-05 1.442e-05 0.00% Castro::create_source_corrector() 10 6.543e-06 1.128e-05 1.407e-05 0.00% Amr::initSubcycle() 1 8.015e-06 1.099e-05 1.384e-05 0.00% Gravity::set_mass_offset() 10 6.985e-06 9.447e-06 1.322e-05 0.00% Castro::FluxRegCrseInit 10 6.055e-06 9.519e-06 1.132e-05 0.00% Amr::InitializeInit() 1 2.184e-06 3.387e-06 8.613e-06 0.00% Castro::retry_advance_ctu() 10 5.034e-06 7.077e-06 8.452e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.505e-06 4.733e-06 8.004e-06 0.00% Castro::post_init() 1 3.011e-06 5.474e-06 7.577e-06 0.00% Castro::computeInitialDt() 2 3.199e-06 3.964e-06 4.93e-06 0.00% Castro::post_regrid() 1 1.601e-06 2.393e-06 3.372e-06 0.00% Castro::FluxRegFineAdd() 10 2.096e-06 2.752e-06 3.294e-06 0.00% Amr::init() 1 1.796e-06 2.09e-06 2.395e-06 0.00% Amr::initialInit() 1 1.32e-06 1.652e-06 1.921e-06 0.00% DistributionMapping::Distribute() 1 9.01e-07 1.162e-06 1.472e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.642 3.643 3.644 100.00% Amr::coarseTimeStep() 10 3.426 3.426 3.427 94.03% Amr::timeStep() 10 3.415 3.417 3.417 93.78% Castro::advance() 10 3.4 3.4 3.4 93.32% Castro::subcycle_advance_ctu() 10 3.326 3.328 3.331 91.42% Castro::do_advance_ctu() 10 3.326 3.328 3.331 91.42% Castro::construct_ctu_hydro_source() 10 2.069 2.376 2.494 68.45% Gravity::make_radial_gravity() 21 0.3406 0.3535 0.3716 10.20% Gravity::get_new_grav_vector() 11 0.2267 0.2303 0.2329 6.39% Castro::construct_old_gravity() 10 0.2016 0.2136 0.2285 6.27% Gravity::get_old_grav_vector() 10 0.2007 0.2128 0.2278 6.25% Castro::construct_new_gravity() 10 0.2002 0.2035 0.2058 5.65% FillPatchIterator::Initialize 41 0.1786 0.1875 0.1983 5.44% Castro::initialize_do_advance() 10 0.1586 0.1716 0.1799 4.94% Amr::init() 1 0.1759 0.1762 0.1763 4.84% FillPatchSingleLevel 41 0.1286 0.1429 0.1704 4.68% Amr::initialInit() 1 0.1619 0.1622 0.1625 4.46% FabArray::ParallelCopy() 41 0.08467 0.1009 0.1343 3.69% Amr::InitializeInit() 1 0.0743 0.1069 0.1322 3.63% Amr::defBaseLevel() 1 0.07429 0.1069 0.1322 3.63% Castro::expand_state() 10 0.118 0.1238 0.1307 3.59% Castro::clean_state() 62 0.1135 0.1178 0.1206 3.31% Castro::initData() 1 0.05504 0.09039 0.1177 3.23% FabArray::ParallelCopy_finish() 41 0.03641 0.05653 0.1034 2.84% Amr::FinalizeInit() 1 0.03031 0.05527 0.0878 2.41% Castro::estTimeStep() 21 0.02644 0.05187 0.08247 2.26% Castro::initialize_advance() 10 0.06873 0.07258 0.07451 2.04% FabArray::setVal() 143 0.06687 0.07091 0.07331 2.01% Castro::computeTemp() 63 0.06806 0.06988 0.07215 1.98% Castro::do_new_sources() 10 0.06327 0.06506 0.06599 1.81% Castro::computeInitialDt() 2 0.001717 0.02693 0.05947 1.63% Castro::reset_internal_energy(MultiFab) 63 0.04967 0.05069 0.05235 1.44% Castro::reset_internal_energy(Fab) 1008 0.04935 0.05038 0.05204 1.43% Castro::do_old_sources() 10 0.03812 0.04694 0.05032 1.38% Amr::writePlotFile() 2 0.0492 0.04945 0.04982 1.37% FabArray::ParallelCopy_nowait() 41 0.03079 0.04426 0.04937 1.35% StateDataPhysBCFunct::() 41 0.036 0.04196 0.04616 1.27% StateData::FillBoundary(geom) 41 0.03587 0.04183 0.04602 1.26% Castro::normalize_species() 62 0.03961 0.04184 0.04343 1.19% Castro::construct_new_source() 50 0.02901 0.03041 0.03128 0.86% Gravity::interpolate_monopole_grav() 21 0.0256 0.02734 0.02824 0.78% Castro::post_init() 1 0.02728 0.02759 0.02796 0.77% Castro::construct_new_gravity_source() 10 0.02344 0.02376 0.02399 0.66% Castro::post_timestep() 10 0.01449 0.01604 0.01684 0.46% Castro::apply_source_to_state() 20 0.01138 0.01498 0.01655 0.45% MultiFab::Saxpy() 20 0.01133 0.01493 0.01649 0.45% VisMF::Write(FabArray) 2 0.01055 0.0116 0.014 0.38% FabArray::setDomainBndry() 41 0.005841 0.01065 0.01248 0.34% Castro::check_for_nan() 20 0.01035 0.01135 0.01243 0.34% MultiFab::contains_nan() 20 0.01033 0.01133 0.01241 0.34% Castro::Castro() 1 0.008655 0.01055 0.01239 0.34% Castro::construct_old_source() 50 0.00706 0.01081 0.01226 0.34% Castro::construct_old_gravity_source() 10 0.007017 0.01073 0.01217 0.33% Castro::initMFs() 1 0.00545 0.006828 0.008175 0.22% Castro::computeNewDt() 9 0.007299 0.007307 0.007319 0.20% Castro::enforce_min_density() 62 0.006459 0.006836 0.007318 0.20% AmrLevel::AmrLevel(dm) 1 0.004518 0.00566 0.006655 0.18% StateData::define() 4 0.004503 0.005642 0.006626 0.18% Castro::swap_state_time_levels() 10 0.00304 0.003977 0.004451 0.12% Castro::buildMetrics() 1 0.001409 0.001801 0.002139 0.06% Castro::post_regrid() 1 0.001544 0.001671 0.001886 0.05% Castro::finalize_do_advance() 10 0.00128 0.001524 0.001712 0.05% Amr::InitAmr() 1 0.0002607 0.0003846 0.0006151 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.321e-05 0.0002689 0.0004084 0.01% DistributionMapping::LeastUsedCPUs() 1 7.836e-06 0.000263 0.0003993 0.01% FabArrayBase::getCPC() 41 8.037e-05 9.125e-05 0.0001011 0.00% Castro::enforce_consistent_e() 1 8.357e-05 8.861e-05 9.641e-05 0.00% Castro::finalize_advance() 10 5.999e-05 6.525e-05 7.011e-05 0.00% Amr::writeSmallPlotFile() 1 2.443e-05 5.118e-05 7.002e-05 0.00% Castro::enforce_speed_limit() 62 2.499e-05 3.143e-05 4.361e-05 0.00% FabArrayBase::CPC::define() 2 2.465e-05 2.72e-05 3.181e-05 0.00% Gravity::swapTimeLevels() 10 7.105e-06 1.205e-05 1.515e-05 0.00% Castro::create_source_corrector() 10 6.543e-06 1.128e-05 1.407e-05 0.00% Amr::initSubcycle() 1 8.015e-06 1.099e-05 1.384e-05 0.00% Gravity::set_mass_offset() 10 6.985e-06 9.447e-06 1.322e-05 0.00% Castro::FluxRegCrseInit 10 6.055e-06 9.519e-06 1.132e-05 0.00% Castro::retry_advance_ctu() 10 5.034e-06 7.077e-06 8.452e-06 0.00% Castro::FluxRegFineAdd() 10 2.096e-06 2.752e-06 3.294e-06 0.00% DistributionMapping::Distribute() 1 9.01e-07 1.162e-06 1.472e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.07-8-ga633d2bff1db) finalized