MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.07-9-g40b3d2176b17) initialized Starting run at 05:38:01 UTC on 2022-07-18. Successfully read inputs file ... Castro git describe: 22.07-6-g8dff7e76c AMReX git describe: 22.07-9-g40b3d2176 Microphysics git describe: 22.07-13-g29a6e0f1 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.013567361 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.367074848 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.338477083 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.338482367 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.338718185 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.348842314 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.347752647 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.337407755 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.338362449 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.33662987 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.336914857 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009722664 seconds Ending run at 05:38:05 UTC on 2022-07-18. Run time = 3.644341843 Run time without initialization = 3.445025402 Average number of zones advanced per microsecond: 0.761 Average number of zones advanced per microsecond per rank: 0.095 TinyProfiler total time across processes [min...avg...max]: 3.644 ... 3.644 ... 3.644 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.0833 2.3831 2.4920 68.38% Castro::do_advance_ctu() 10 0.04991 0.1612 0.4641 12.74% Gravity::make_radial_gravity() 21 0.3419 0.355 0.3828 10.50% Castro::initData() 1 0.03831 0.081 0.1354 3.72% FabArray::ParallelCopy_finish() 41 0.03933 0.06013 0.1287 3.53% Castro::estTimeStep() 21 0.02796 0.08522 0.1256 3.45% FabArray::setVal() 143 0.05612 0.06767 0.07117 1.95% Castro::reset_internal_energy(Fab) 1008 0.04616 0.0496 0.05169 1.42% FabArray::ParallelCopy_nowait() 41 0.02536 0.04316 0.04921 1.35% StateData::FillBoundary(geom) 41 0.03387 0.04182 0.04652 1.28% Castro::normalize_species() 62 0.03873 0.04105 0.04224 1.16% FillPatchIterator::Initialize 41 0.02055 0.03285 0.03737 1.03% Gravity::interpolate_monopole_grav() 21 0.02567 0.02736 0.02818 0.77% Castro::construct_new_gravity_source() 10 0.01969 0.02283 0.02391 0.66% Castro::expand_state() 10 0.009665 0.01894 0.02224 0.61% Castro::computeTemp() 63 0.01739 0.01873 0.01961 0.54% Castro::initialize_do_advance() 10 0.008726 0.0164 0.01844 0.51% MultiFab::Saxpy() 20 0.008684 0.01432 0.01611 0.44% VisMF::Write(FabArray) 2 0.01153 0.01197 0.01416 0.39% Gravity::get_new_grav_vector() 11 0.007237 0.0114 0.01397 0.38% FabArray::setDomainBndry() 41 0.004624 0.01041 0.01252 0.34% Amr::writePlotFile() 2 0.009342 0.01162 0.0122 0.33% Castro::construct_old_gravity_source() 10 0.004941 0.01002 0.01186 0.33% MultiFab::contains_nan() 20 0.009544 0.01089 0.01184 0.32% Gravity::get_old_grav_vector() 10 0.005343 0.009467 0.01134 0.31% Castro::initialize_advance() 10 0.003266 0.008557 0.009387 0.26% Castro::enforce_min_density() 62 0.005855 0.006659 0.00712 0.20% Castro::initMFs() 1 0.005588 0.005971 0.007112 0.20% Castro::construct_new_source() 50 0.004764 0.006463 0.007072 0.19% main() 1 0.005263 0.005546 0.005865 0.16% StateData::define() 4 0.004605 0.004756 0.005163 0.14% Castro::swap_state_time_levels() 10 0.002636 0.003631 0.00394 0.11% Amr::coarseTimeStep() 10 0.0009104 0.001672 0.002905 0.08% Castro::buildMetrics() 1 0.0013 0.001355 0.001488 0.04% Castro::finalize_do_advance() 10 0.0005406 0.0009924 0.001137 0.03% Amr::timeStep() 10 0.0001769 0.0002345 0.0005163 0.01% Amr::InitAmr() 1 0.0002663 0.000292 0.0003879 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002794 0.0003023 0.0003116 0.01% Castro::clean_state() 62 0.0001196 0.0001473 0.0001695 0.00% StateDataPhysBCFunct::() 41 8.705e-05 0.0001273 0.0001473 0.00% DistributionMapping::LeastUsedCPUs() 1 7.637e-06 0.0001004 0.0001204 0.00% FabArray::ParallelCopy() 41 6.361e-05 8.137e-05 9.868e-05 0.00% Castro::enforce_consistent_e() 1 7.762e-05 8.476e-05 9.131e-05 0.00% Castro::Castro() 1 5.131e-05 6.481e-05 9.028e-05 0.00% Castro::do_new_sources() 10 3.928e-05 7.054e-05 8.454e-05 0.00% Castro::construct_old_source() 50 3.314e-05 6.681e-05 8.431e-05 0.00% Castro::do_old_sources() 10 3.942e-05 6.459e-05 8.111e-05 0.00% Amr::FinalizeInit() 1 4.354e-06 1.36e-05 7.292e-05 0.00% Amr::writeSmallPlotFile() 1 3.46e-05 5.938e-05 7.02e-05 0.00% FillPatchSingleLevel 41 4.954e-05 6.101e-05 6.776e-05 0.00% FabArrayBase::getCPC() 41 4.622e-05 5.877e-05 6.732e-05 0.00% Castro::construct_old_gravity() 10 3.141e-05 5.102e-05 6.38e-05 0.00% Castro::finalize_advance() 10 4.718e-05 5.406e-05 6.057e-05 0.00% Castro::apply_source_to_state() 20 2.826e-05 4.499e-05 6.03e-05 0.00% Castro::subcycle_advance_ctu() 10 3.259e-05 4.708e-05 5.507e-05 0.00% Castro::construct_new_gravity() 10 3.547e-05 4.655e-05 5.166e-05 0.00% Castro::advance() 10 3.015e-05 4.22e-05 5.151e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.734e-05 2.572e-05 3.498e-05 0.00% Amr::defBaseLevel() 1 1.737e-05 2.288e-05 3.14e-05 0.00% Castro::enforce_speed_limit() 62 2.209e-05 2.805e-05 3.089e-05 0.00% FabArrayBase::CPC::define() 2 2.267e-05 2.526e-05 3.008e-05 0.00% Castro::check_for_nan() 20 1.698e-05 2.216e-05 2.709e-05 0.00% Castro::post_timestep() 10 1.248e-05 1.357e-05 1.656e-05 0.00% Gravity::swapTimeLevels() 10 6.451e-06 1.242e-05 1.612e-05 0.00% Castro::FluxRegCrseInit 10 6.316e-06 9.783e-06 1.213e-05 0.00% Castro::create_source_corrector() 10 5.443e-06 9.344e-06 1.201e-05 0.00% Gravity::set_mass_offset() 10 6.88e-06 9.852e-06 1.189e-05 0.00% Castro::computeNewDt() 9 6.884e-06 8.597e-06 1.039e-05 0.00% Amr::initSubcycle() 1 8.148e-06 8.977e-06 9.761e-06 0.00% Castro::post_regrid() 1 2.086e-06 3.855e-06 8.335e-06 0.00% Castro::retry_advance_ctu() 10 4.98e-06 6.755e-06 8.211e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.524e-06 4.749e-06 7.24e-06 0.00% Amr::InitializeInit() 1 1.914e-06 2.996e-06 5.417e-06 0.00% Castro::computeInitialDt() 2 3.868e-06 4.477e-06 5.009e-06 0.00% Castro::post_init() 1 2.96e-06 3.598e-06 4.488e-06 0.00% Castro::FluxRegFineAdd() 10 2.18e-06 2.592e-06 3.534e-06 0.00% Amr::init() 1 1.781e-06 2.025e-06 2.3e-06 0.00% Amr::initialInit() 1 1.051e-06 1.651e-06 2.176e-06 0.00% DistributionMapping::Distribute() 1 9.14e-07 1.033e-06 1.49e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.644 3.644 3.644 100.00% Amr::coarseTimeStep() 10 3.429 3.429 3.429 94.10% Amr::timeStep() 10 3.419 3.42 3.421 93.86% Castro::advance() 10 3.403 3.404 3.404 93.40% Castro::subcycle_advance_ctu() 10 3.333 3.336 3.349 91.90% Castro::do_advance_ctu() 10 3.333 3.336 3.349 91.90% Castro::construct_ctu_hydro_source() 10 2.083 2.383 2.492 68.38% Gravity::make_radial_gravity() 21 0.3419 0.355 0.3828 10.50% Gravity::get_new_grav_vector() 11 0.2311 0.2329 0.2341 6.42% Castro::construct_old_gravity() 10 0.202 0.2119 0.2327 6.39% Gravity::get_old_grav_vector() 10 0.2011 0.211 0.2322 6.37% FillPatchIterator::Initialize 41 0.1817 0.1887 0.2144 5.88% Castro::construct_new_gravity() 10 0.2055 0.2065 0.2075 5.69% Amr::init() 1 0.1988 0.1989 0.1989 5.46% FillPatchSingleLevel 41 0.1335 0.1455 0.1893 5.19% Amr::initialInit() 1 0.1849 0.1851 0.1854 5.09% Castro::initialize_do_advance() 10 0.156 0.1711 0.1766 4.85% Amr::InitializeInit() 1 0.05693 0.09987 0.1554 4.27% Amr::defBaseLevel() 1 0.05693 0.09987 0.1554 4.27% FabArray::ParallelCopy() 41 0.08816 0.1034 0.1542 4.23% Castro::initData() 1 0.0425 0.08508 0.1394 3.83% FabArray::ParallelCopy_finish() 41 0.03933 0.06013 0.1287 3.53% Amr::FinalizeInit() 1 0.02992 0.08523 0.1282 3.52% Castro::expand_state() 10 0.1135 0.1246 0.1282 3.52% Castro::estTimeStep() 21 0.02796 0.08522 0.1256 3.45% Castro::clean_state() 62 0.1077 0.1156 0.1193 3.27% Castro::computeInitialDt() 2 0.0017 0.05728 0.1002 2.75% Castro::computeTemp() 63 0.06384 0.06862 0.0712 1.95% FabArray::setVal() 143 0.05612 0.06767 0.07117 1.95% Castro::initialize_advance() 10 0.05408 0.06752 0.0707 1.94% Castro::do_new_sources() 10 0.05291 0.0629 0.06466 1.77% Castro::reset_internal_energy(MultiFab) 63 0.04645 0.0499 0.052 1.43% Castro::reset_internal_energy(Fab) 1008 0.04616 0.0496 0.05169 1.42% FabArray::ParallelCopy_nowait() 41 0.02543 0.04324 0.0493 1.35% Castro::do_old_sources() 10 0.03215 0.04485 0.04859 1.33% StateDataPhysBCFunct::() 41 0.03396 0.04195 0.04666 1.28% StateData::FillBoundary(geom) 41 0.03387 0.04182 0.04652 1.28% Castro::normalize_species() 62 0.03873 0.04105 0.04224 1.16% Castro::construct_new_source() 50 0.02445 0.02929 0.0304 0.83% Gravity::interpolate_monopole_grav() 21 0.02567 0.02736 0.02818 0.77% Castro::post_init() 1 0.02663 0.02719 0.02742 0.75% Castro::construct_new_gravity_source() 10 0.01969 0.02283 0.02391 0.66% Amr::writePlotFile() 2 0.02334 0.02359 0.02383 0.65% Castro::apply_source_to_state() 20 0.008714 0.01437 0.01616 0.44% Castro::post_timestep() 10 0.01473 0.01566 0.01613 0.44% MultiFab::Saxpy() 20 0.008684 0.01432 0.01611 0.44% VisMF::Write(FabArray) 2 0.01153 0.01197 0.01416 0.39% FabArray::setDomainBndry() 41 0.004624 0.01041 0.01252 0.34% Castro::construct_old_source() 50 0.004974 0.01008 0.01194 0.33% Castro::check_for_nan() 20 0.009563 0.01092 0.01186 0.33% Castro::construct_old_gravity_source() 10 0.004941 0.01002 0.01186 0.33% MultiFab::contains_nan() 20 0.009544 0.01089 0.01184 0.32% Castro::Castro() 1 0.009497 0.009883 0.01074 0.29% Castro::enforce_min_density() 62 0.005855 0.006659 0.00712 0.20% Castro::initMFs() 1 0.005588 0.005971 0.007112 0.20% Castro::computeNewDt() 9 0.007052 0.007062 0.007074 0.19% AmrLevel::AmrLevel(dm) 1 0.004626 0.004782 0.005191 0.14% StateData::define() 4 0.004605 0.004756 0.005163 0.14% Castro::swap_state_time_levels() 10 0.002636 0.003631 0.00394 0.11% Castro::post_regrid() 1 0.001539 0.001665 0.001985 0.05% Castro::buildMetrics() 1 0.00142 0.001486 0.001635 0.04% Castro::finalize_do_advance() 10 0.0005406 0.0009924 0.001137 0.03% Amr::InitAmr() 1 0.0002755 0.000301 0.0003961 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.212e-05 0.0001062 0.0001288 0.00% DistributionMapping::LeastUsedCPUs() 1 7.637e-06 0.0001004 0.0001204 0.00% FabArrayBase::getCPC() 41 7.207e-05 8.403e-05 9.739e-05 0.00% Castro::enforce_consistent_e() 1 7.762e-05 8.476e-05 9.131e-05 0.00% Castro::finalize_advance() 10 5.568e-05 6.643e-05 7.195e-05 0.00% Amr::writeSmallPlotFile() 1 3.46e-05 5.938e-05 7.02e-05 0.00% Castro::enforce_speed_limit() 62 2.209e-05 2.805e-05 3.089e-05 0.00% FabArrayBase::CPC::define() 2 2.267e-05 2.526e-05 3.008e-05 0.00% Gravity::swapTimeLevels() 10 6.451e-06 1.242e-05 1.612e-05 0.00% Castro::FluxRegCrseInit 10 6.316e-06 9.783e-06 1.213e-05 0.00% Castro::create_source_corrector() 10 5.443e-06 9.344e-06 1.201e-05 0.00% Gravity::set_mass_offset() 10 6.88e-06 9.852e-06 1.189e-05 0.00% Amr::initSubcycle() 1 8.148e-06 8.977e-06 9.761e-06 0.00% Castro::retry_advance_ctu() 10 4.98e-06 6.755e-06 8.211e-06 0.00% Castro::FluxRegFineAdd() 10 2.18e-06 2.592e-06 3.534e-06 0.00% DistributionMapping::Distribute() 1 9.14e-07 1.033e-06 1.49e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.07-9-g40b3d2176b17) finalized