MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.07-11-gb673d81723c5) initialized Starting run at 05:38:27 UTC on 2022-07-20. Successfully read inputs file ... Castro git describe: 22.07-8-g45516643d AMReX git describe: 22.07-11-gb673d8172 Microphysics git describe: 22.07-14-g7acbea13 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.01346436 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.356066662 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.352718482 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.357844982 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.348703472 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.349709826 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.345698651 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.335382841 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.335628412 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.335281906 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.335403094 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009682047 seconds Ending run at 05:38:31 UTC on 2022-07-20. Run time = 3.642894017 Run time without initialization = 3.468266681 Average number of zones advanced per microsecond: 0.756 Average number of zones advanced per microsecond per rank: 0.094 TinyProfiler total time across processes [min...avg...max]: 3.641 ... 3.643 ... 3.643 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.0265 2.4170 2.5268 69.36% Castro::do_advance_ctu() 10 0.03067 0.1399 0.5334 14.64% Gravity::make_radial_gravity() 21 0.344 0.3548 0.3861 10.60% FabArray::ParallelCopy_finish() 41 0.04167 0.06036 0.1379 3.79% Castro::initData() 1 0.039 0.08014 0.1152 3.16% Castro::estTimeStep() 21 0.02556 0.06304 0.1024 2.81% FabArray::setVal() 143 0.05457 0.0671 0.06938 1.90% Castro::reset_internal_energy(Fab) 1008 0.04569 0.05032 0.05268 1.45% FabArray::ParallelCopy_nowait() 41 0.02452 0.04527 0.05068 1.39% StateData::FillBoundary(geom) 41 0.03631 0.04313 0.04704 1.29% Castro::normalize_species() 62 0.04029 0.04183 0.04344 1.19% FillPatchIterator::Initialize 41 0.01969 0.03423 0.03816 1.05% Gravity::interpolate_monopole_grav() 21 0.02563 0.02752 0.02843 0.78% Castro::construct_new_gravity_source() 10 0.01905 0.02256 0.02351 0.65% Castro::expand_state() 10 0.009193 0.01979 0.02334 0.64% Castro::computeTemp() 63 0.01731 0.01907 0.02007 0.55% Castro::initialize_do_advance() 10 0.008344 0.01722 0.01914 0.53% MultiFab::Saxpy() 20 0.007761 0.01454 0.01671 0.46% VisMF::Write(FabArray) 2 0.01111 0.01206 0.01422 0.39% FabArray::setDomainBndry() 41 0.004533 0.01124 0.01318 0.36% Gravity::get_new_grav_vector() 11 0.006846 0.01171 0.01285 0.35% Amr::writePlotFile() 2 0.009158 0.01148 0.01275 0.35% MultiFab::contains_nan() 20 0.009301 0.01097 0.01186 0.33% Castro::construct_old_gravity_source() 10 0.004748 0.01011 0.01175 0.32% Gravity::get_old_grav_vector() 10 0.005174 0.009885 0.01135 0.31% Castro::initialize_advance() 10 0.003199 0.008378 0.009536 0.26% Castro::construct_new_source() 50 0.004797 0.006655 0.007301 0.20% Castro::initMFs() 1 0.005625 0.005962 0.006687 0.18% Castro::enforce_min_density() 62 0.005053 0.006165 0.006635 0.18% main() 1 0.003373 0.005029 0.005425 0.15% StateData::define() 4 0.004581 0.004782 0.00509 0.14% Castro::swap_state_time_levels() 10 0.002565 0.003603 0.003913 0.11% Amr::coarseTimeStep() 10 0.0009339 0.001728 0.003881 0.11% Castro::buildMetrics() 1 0.001328 0.001393 0.001483 0.04% Castro::finalize_do_advance() 10 0.0004568 0.001195 0.001455 0.04% Amr::timeStep() 10 0.0001895 0.0002542 0.0005339 0.01% Amr::InitAmr() 1 0.0002559 0.0002915 0.0003695 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002823 0.0002986 0.000312 0.01% Castro::clean_state() 62 0.0001555 0.0001689 0.0001874 0.01% StateDataPhysBCFunct::() 41 0.0001173 0.0001391 0.000157 0.00% Castro::enforce_consistent_e() 1 7.723e-05 9.451e-05 0.000124 0.00% DistributionMapping::LeastUsedCPUs() 1 7.172e-06 7.923e-05 0.0001123 0.00% FabArray::ParallelCopy() 41 7.114e-05 9.005e-05 0.0001054 0.00% Castro::subcycle_advance_ctu() 10 3.677e-05 5.483e-05 9.365e-05 0.00% Castro::construct_old_source() 50 3.079e-05 7.485e-05 9.345e-05 0.00% Castro::Castro() 1 5.462e-05 7.437e-05 9.331e-05 0.00% Castro::do_new_sources() 10 4.617e-05 7.106e-05 8.78e-05 0.00% Castro::do_old_sources() 10 3.897e-05 6.952e-05 7.941e-05 0.00% FillPatchSingleLevel 41 5.721e-05 6.746e-05 7.453e-05 0.00% Amr::FinalizeInit() 1 3.501e-06 1.27e-05 7.241e-05 0.00% FabArrayBase::getCPC() 41 5.719e-05 6.305e-05 6.987e-05 0.00% Amr::writeSmallPlotFile() 1 3.132e-05 5.658e-05 6.898e-05 0.00% Castro::construct_old_gravity() 10 4.234e-05 5.609e-05 6.825e-05 0.00% Castro::apply_source_to_state() 20 3.531e-05 5.027e-05 5.897e-05 0.00% Castro::finalize_advance() 10 4.747e-05 5.224e-05 5.86e-05 0.00% Castro::construct_new_gravity() 10 4.304e-05 4.776e-05 5.143e-05 0.00% Castro::advance() 10 3.742e-05 4.455e-05 4.999e-05 0.00% Castro::enforce_speed_limit() 62 2.642e-05 3.111e-05 3.513e-05 0.00% FabArrayBase::CPC::define() 2 2.264e-05 2.686e-05 3.428e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.483e-05 2.256e-05 3.026e-05 0.00% Castro::check_for_nan() 20 1.98e-05 2.328e-05 2.715e-05 0.00% Amr::defBaseLevel() 1 1.714e-05 1.963e-05 2.681e-05 0.00% Castro::post_timestep() 10 1.287e-05 1.477e-05 1.717e-05 0.00% Gravity::swapTimeLevels() 10 6.525e-06 1.309e-05 1.59e-05 0.00% Castro::create_source_corrector() 10 7.286e-06 1.098e-05 1.3e-05 0.00% Gravity::set_mass_offset() 10 6.297e-06 9.43e-06 1.164e-05 0.00% Castro::FluxRegCrseInit 10 7.154e-06 8.881e-06 1.087e-05 0.00% Castro::computeNewDt() 9 8.389e-06 9.426e-06 1.026e-05 0.00% Amr::initSubcycle() 1 7.803e-06 8.824e-06 1.012e-05 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.543e-06 5.363e-06 7.8e-06 0.00% Castro::retry_advance_ctu() 10 4.683e-06 5.932e-06 6.661e-06 0.00% Amr::InitializeInit() 1 2.146e-06 3.322e-06 6.51e-06 0.00% Castro::computeInitialDt() 2 3.673e-06 3.987e-06 4.671e-06 0.00% Castro::post_init() 1 2.674e-06 3.596e-06 4.323e-06 0.00% Castro::post_regrid() 1 1.769e-06 2.457e-06 3.216e-06 0.00% Castro::FluxRegFineAdd() 10 1.797e-06 2.224e-06 2.714e-06 0.00% Amr::init() 1 1.506e-06 2.072e-06 2.552e-06 0.00% Amr::initialInit() 1 1.215e-06 1.744e-06 2.097e-06 0.00% DistributionMapping::Distribute() 1 8.85e-07 1.075e-06 1.545e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.641 3.643 3.643 100.00% Amr::coarseTimeStep() 10 3.453 3.453 3.453 94.79% Amr::timeStep() 10 3.441 3.443 3.444 94.54% Castro::advance() 10 3.426 3.427 3.427 94.08% Castro::subcycle_advance_ctu() 10 3.357 3.36 3.374 92.61% Castro::do_advance_ctu() 10 3.357 3.36 3.374 92.61% Castro::construct_ctu_hydro_source() 10 2.026 2.417 2.527 69.36% Gravity::make_radial_gravity() 21 0.344 0.3548 0.3861 10.60% Castro::construct_old_gravity() 10 0.2036 0.2133 0.2365 6.49% Gravity::get_old_grav_vector() 10 0.2026 0.2124 0.2359 6.48% Gravity::get_new_grav_vector() 11 0.2292 0.2324 0.2337 6.41% FillPatchIterator::Initialize 41 0.1853 0.1946 0.2233 6.13% Castro::construct_new_gravity() 10 0.2063 0.2092 0.2103 5.77% FillPatchSingleLevel 41 0.1353 0.1492 0.1991 5.47% Castro::initialize_do_advance() 10 0.1656 0.1768 0.1823 5.01% Amr::init() 1 0.1741 0.1742 0.1742 4.78% FabArray::ParallelCopy() 41 0.09179 0.1058 0.1626 4.46% Amr::initialInit() 1 0.1601 0.1604 0.1606 4.41% FabArray::ParallelCopy_finish() 41 0.04167 0.06036 0.1379 3.79% Amr::InitializeInit() 1 0.05771 0.09917 0.1342 3.68% Amr::defBaseLevel() 1 0.05771 0.09917 0.1342 3.68% Castro::expand_state() 10 0.1204 0.1292 0.1329 3.65% Castro::clean_state() 62 0.1078 0.1169 0.121 3.32% Castro::initData() 1 0.04326 0.08422 0.1194 3.28% Amr::FinalizeInit() 1 0.02626 0.06125 0.1028 2.82% Castro::estTimeStep() 21 0.02556 0.06304 0.1024 2.81% Castro::computeInitialDt() 2 0.001721 0.03671 0.07819 2.15% Castro::computeTemp() 63 0.06347 0.06969 0.07305 2.01% Castro::initialize_advance() 10 0.05227 0.06673 0.06975 1.91% FabArray::setVal() 143 0.05457 0.0671 0.06938 1.90% Castro::do_new_sources() 10 0.05158 0.06306 0.06565 1.80% Castro::reset_internal_energy(MultiFab) 63 0.04597 0.05062 0.05298 1.45% Castro::reset_internal_energy(Fab) 1008 0.04569 0.05032 0.05268 1.45% FabArray::ParallelCopy_nowait() 41 0.02462 0.04536 0.05076 1.39% Castro::do_old_sources() 10 0.03137 0.04523 0.04954 1.36% StateDataPhysBCFunct::() 41 0.03644 0.04327 0.04717 1.29% StateData::FillBoundary(geom) 41 0.03631 0.04313 0.04704 1.29% Castro::normalize_species() 62 0.04029 0.04183 0.04344 1.19% Castro::construct_new_source() 50 0.02385 0.02921 0.03058 0.84% Gravity::interpolate_monopole_grav() 21 0.02563 0.02752 0.02843 0.78% Castro::post_init() 1 0.02371 0.02393 0.0241 0.66% Amr::writePlotFile() 2 0.02337 0.02353 0.02386 0.65% Castro::construct_new_gravity_source() 10 0.01905 0.02256 0.02351 0.65% Castro::apply_source_to_state() 20 0.007796 0.01459 0.01677 0.46% MultiFab::Saxpy() 20 0.007761 0.01454 0.01671 0.46% Castro::post_timestep() 10 0.01459 0.01599 0.0166 0.46% VisMF::Write(FabArray) 2 0.01111 0.01206 0.01422 0.39% FabArray::setDomainBndry() 41 0.004533 0.01124 0.01318 0.36% Castro::check_for_nan() 20 0.009321 0.01099 0.01189 0.33% MultiFab::contains_nan() 20 0.009301 0.01097 0.01186 0.33% Castro::construct_old_source() 50 0.004779 0.01019 0.01185 0.33% Castro::construct_old_gravity_source() 10 0.004748 0.01011 0.01175 0.32% Castro::Castro() 1 0.009566 0.01004 0.0108 0.30% Castro::computeNewDt() 9 0.00739 0.0074 0.007407 0.20% Castro::initMFs() 1 0.005625 0.005962 0.006687 0.18% Castro::enforce_min_density() 62 0.005053 0.006165 0.006635 0.18% AmrLevel::AmrLevel(dm) 1 0.004603 0.004804 0.005112 0.14% StateData::define() 4 0.004581 0.004782 0.00509 0.14% Castro::swap_state_time_levels() 10 0.002565 0.003603 0.003913 0.11% Castro::buildMetrics() 1 0.001453 0.001524 0.00163 0.04% Castro::post_regrid() 1 0.001443 0.001535 0.001598 0.04% Castro::finalize_do_advance() 10 0.0004568 0.001195 0.001455 0.04% Amr::InitAmr() 1 0.0002648 0.0003003 0.0003776 0.01% Castro::enforce_consistent_e() 1 7.723e-05 9.451e-05 0.000124 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 1.161e-05 8.567e-05 0.0001198 0.00% DistributionMapping::LeastUsedCPUs() 1 7.172e-06 7.923e-05 0.0001123 0.00% FabArrayBase::getCPC() 41 8.241e-05 8.991e-05 9.607e-05 0.00% Castro::finalize_advance() 10 5.653e-05 6.334e-05 7.188e-05 0.00% Amr::writeSmallPlotFile() 1 3.132e-05 5.658e-05 6.898e-05 0.00% Castro::enforce_speed_limit() 62 2.642e-05 3.111e-05 3.513e-05 0.00% FabArrayBase::CPC::define() 2 2.264e-05 2.686e-05 3.428e-05 0.00% Gravity::swapTimeLevels() 10 6.525e-06 1.309e-05 1.59e-05 0.00% Castro::create_source_corrector() 10 7.286e-06 1.098e-05 1.3e-05 0.00% Gravity::set_mass_offset() 10 6.297e-06 9.43e-06 1.164e-05 0.00% Castro::FluxRegCrseInit 10 7.154e-06 8.881e-06 1.087e-05 0.00% Amr::initSubcycle() 1 7.803e-06 8.824e-06 1.012e-05 0.00% Castro::retry_advance_ctu() 10 4.683e-06 5.932e-06 6.661e-06 0.00% Castro::FluxRegFineAdd() 10 1.797e-06 2.224e-06 2.714e-06 0.00% DistributionMapping::Distribute() 1 8.85e-07 1.075e-06 1.545e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.07-11-gb673d81723c5) finalized