MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.07-13-g4b7e20057a3d) initialized Starting run at 05:37:53 UTC on 2022-07-22. Successfully read inputs file ... Castro git describe: 22.07-10-gf80c3f7eb AMReX git describe: 22.07-13-g4b7e20057 Microphysics git describe: 22.07-15-ga4952214 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.013356738 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.364919068 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.351758728 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.341167471 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.343001589 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.354924271 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.346696919 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.335419776 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.335108268 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.334808892 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.334815558 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009452847 seconds Ending run at 05:37:57 UTC on 2022-07-22. Run time = 3.631697983 Run time without initialization = 3.458287854 Average number of zones advanced per microsecond: 0.758 Average number of zones advanced per microsecond per rank: 0.095 TinyProfiler total time across processes [min...avg...max]: 3.631 ... 3.632 ... 3.632 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1750 2.4091 2.5107 69.13% Gravity::make_radial_gravity() 21 0.3387 0.35 0.3716 10.23% Castro::do_advance_ctu() 10 0.0299 0.1308 0.3687 10.15% Castro::initData() 1 0.03791 0.07826 0.114 3.14% Castro::estTimeStep() 21 0.02865 0.06467 0.1048 2.89% FabArray::ParallelCopy_finish() 41 0.03933 0.05651 0.1024 2.82% FabArray::setVal() 143 0.06949 0.07218 0.07382 2.03% Castro::reset_internal_energy(Fab) 1008 0.04773 0.05009 0.05212 1.44% FabArray::ParallelCopy_nowait() 41 0.03084 0.0459 0.05115 1.41% StateData::FillBoundary(geom) 41 0.03803 0.04349 0.04694 1.29% Castro::normalize_species() 62 0.0403 0.04128 0.04205 1.16% FillPatchIterator::Initialize 41 0.0223 0.03475 0.03852 1.06% Gravity::interpolate_monopole_grav() 21 0.02636 0.02741 0.0278 0.77% Castro::construct_new_gravity_source() 10 0.0234 0.0238 0.02467 0.68% Castro::expand_state() 10 0.01357 0.02089 0.02402 0.66% Castro::initialize_do_advance() 10 0.01416 0.01852 0.02021 0.56% Castro::computeTemp() 63 0.01781 0.01915 0.02005 0.55% MultiFab::Saxpy() 20 0.01154 0.01531 0.01685 0.46% VisMF::Write(FabArray) 2 0.01059 0.0112 0.01358 0.37% MultiFab::contains_nan() 20 0.01027 0.01161 0.01343 0.37% Gravity::get_new_grav_vector() 11 0.01016 0.01235 0.01323 0.36% FabArray::setDomainBndry() 41 0.00631 0.01142 0.01293 0.36% Amr::writePlotFile() 2 0.009491 0.01177 0.01257 0.35% Castro::construct_old_gravity_source() 10 0.007222 0.01092 0.01249 0.34% Gravity::get_old_grav_vector() 10 0.006889 0.01021 0.01166 0.32% Castro::initialize_advance() 10 0.01049 0.01065 0.01099 0.30% Castro::construct_new_source() 50 0.005169 0.006714 0.007331 0.20% Castro::enforce_min_density() 62 0.005733 0.006162 0.00674 0.19% Castro::initMFs() 1 0.005507 0.0059 0.006478 0.18% main() 1 0.004796 0.00517 0.005496 0.15% StateData::define() 4 0.004532 0.004796 0.005066 0.14% Castro::swap_state_time_levels() 10 0.002952 0.003834 0.003978 0.11% Amr::coarseTimeStep() 10 0.0008073 0.001462 0.002419 0.07% Castro::buildMetrics() 1 0.001283 0.001358 0.001451 0.04% Castro::finalize_do_advance() 10 0.001145 0.001221 0.001304 0.04% Amr::timeStep() 10 0.0001888 0.0002572 0.0005325 0.01% Amr::InitAmr() 1 0.0002728 0.0003017 0.0004303 0.01% Amr::writeSmallPlotFile() 1 5.844e-05 0.0001072 0.0004154 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002853 0.0002912 0.000298 0.01% Castro::clean_state() 62 0.0001447 0.0001601 0.0001876 0.01% DistributionMapping::LeastUsedCPUs() 1 8.53e-06 0.0001417 0.0001702 0.00% StateDataPhysBCFunct::() 41 0.0001149 0.0001291 0.0001455 0.00% Castro::enforce_consistent_e() 1 7.745e-05 9.002e-05 0.000126 0.00% FabArray::ParallelCopy() 41 7.907e-05 8.684e-05 9.996e-05 0.00% Castro::construct_old_source() 50 4.647e-05 7.485e-05 9.164e-05 0.00% Castro::subcycle_advance_ctu() 10 3.681e-05 5.857e-05 9.005e-05 0.00% Castro::do_new_sources() 10 5.307e-05 6.998e-05 8.886e-05 0.00% Amr::FinalizeInit() 1 3.807e-06 1.479e-05 8.584e-05 0.00% Castro::Castro() 1 5.105e-05 6.918e-05 8.299e-05 0.00% FillPatchSingleLevel 41 6.088e-05 6.894e-05 8.293e-05 0.00% Castro::do_old_sources() 10 4.971e-05 6.999e-05 8.193e-05 0.00% Castro::construct_new_gravity() 10 4.277e-05 5.076e-05 7.86e-05 0.00% Castro::check_for_nan() 20 2.075e-05 2.946e-05 7.343e-05 0.00% Castro::construct_old_gravity() 10 4.465e-05 5.645e-05 7.12e-05 0.00% Castro::apply_source_to_state() 20 3.484e-05 5.074e-05 6.826e-05 0.00% FabArrayBase::getCPC() 41 5.897e-05 6.33e-05 6.802e-05 0.00% Castro::finalize_advance() 10 4.889e-05 5.522e-05 6.067e-05 0.00% Castro::advance() 10 3.775e-05 4.421e-05 4.792e-05 0.00% Castro::enforce_speed_limit() 62 3.068e-05 3.311e-05 3.665e-05 0.00% Amr::defBaseLevel() 1 1.643e-05 2.422e-05 3.333e-05 0.00% FabArrayBase::CPC::define() 2 2.371e-05 2.794e-05 3.202e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.267e-05 1.97e-05 2.797e-05 0.00% Gravity::swapTimeLevels() 10 9.389e-06 1.392e-05 1.718e-05 0.00% Castro::post_timestep() 10 1.161e-05 1.412e-05 1.646e-05 0.00% Castro::create_source_corrector() 10 7.38e-06 1.036e-05 1.356e-05 0.00% Gravity::set_mass_offset() 10 7.917e-06 1.032e-05 1.282e-05 0.00% Castro::FluxRegCrseInit 10 7.865e-06 1.055e-05 1.238e-05 0.00% Castro::computeNewDt() 9 7.187e-06 9.567e-06 1.119e-05 0.00% Amr::initSubcycle() 1 8.163e-06 8.757e-06 9.179e-06 0.00% Castro::retry_advance_ctu() 10 5.638e-06 6.577e-06 7.791e-06 0.00% Amr::InitializeInit() 1 2.061e-06 4.189e-06 6.721e-06 0.00% Amr::init() 1 1.643e-06 3.903e-06 6.666e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.515e-06 4.471e-06 6.593e-06 0.00% Castro::post_init() 1 3.271e-06 3.816e-06 6.053e-06 0.00% Castro::computeInitialDt() 2 3.874e-06 4.309e-06 4.924e-06 0.00% Castro::post_regrid() 1 1.784e-06 2.627e-06 3.637e-06 0.00% Castro::FluxRegFineAdd() 10 1.843e-06 2.472e-06 3.182e-06 0.00% Amr::initialInit() 1 1.344e-06 1.664e-06 2.073e-06 0.00% DistributionMapping::Distribute() 1 9.89e-07 1.068e-06 1.216e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.631 3.631 3.632 100.00% Amr::coarseTimeStep() 10 3.443 3.443 3.443 94.81% Amr::timeStep() 10 3.433 3.434 3.435 94.57% Castro::advance() 10 3.418 3.418 3.418 94.11% Castro::subcycle_advance_ctu() 10 3.343 3.345 3.349 92.22% Castro::do_advance_ctu() 10 3.343 3.345 3.349 92.22% Castro::construct_ctu_hydro_source() 10 2.175 2.409 2.511 69.13% Gravity::make_radial_gravity() 21 0.3387 0.35 0.3716 10.23% Gravity::get_new_grav_vector() 11 0.2293 0.2324 0.2341 6.45% Castro::construct_old_gravity() 10 0.2012 0.2099 0.2248 6.19% Gravity::get_old_grav_vector() 10 0.2003 0.209 0.2238 6.16% Castro::construct_new_gravity() 10 0.2059 0.2086 0.2099 5.78% FillPatchIterator::Initialize 41 0.1856 0.1924 0.2009 5.53% Castro::initialize_do_advance() 10 0.1655 0.1773 0.1832 5.04% Amr::init() 1 0.1728 0.173 0.173 4.76% FillPatchSingleLevel 41 0.1355 0.1463 0.1722 4.74% Amr::initialInit() 1 0.1593 0.1595 0.1597 4.40% FabArray::ParallelCopy() 41 0.09068 0.1026 0.1334 3.67% Castro::expand_state() 10 0.1204 0.1282 0.1333 3.67% Amr::InitializeInit() 1 0.05602 0.0971 0.1325 3.65% Amr::defBaseLevel() 1 0.05601 0.0971 0.1325 3.65% Castro::clean_state() 62 0.1118 0.1162 0.1198 3.30% Castro::initData() 1 0.04199 0.08228 0.1185 3.26% Castro::estTimeStep() 21 0.02865 0.06467 0.1048 2.89% Amr::FinalizeInit() 1 0.02695 0.06243 0.1037 2.85% FabArray::ParallelCopy_finish() 41 0.03933 0.05651 0.1024 2.82% Castro::computeInitialDt() 2 0.001738 0.03714 0.07826 2.15% Castro::initialize_advance() 10 0.06852 0.07256 0.0746 2.05% FabArray::setVal() 143 0.06949 0.07218 0.07382 2.03% Castro::computeTemp() 63 0.06622 0.06953 0.07246 2.00% Castro::do_new_sources() 10 0.06264 0.06511 0.06598 1.82% Castro::reset_internal_energy(MultiFab) 63 0.04802 0.05038 0.05241 1.44% Castro::reset_internal_energy(Fab) 1008 0.04773 0.05009 0.05212 1.44% FabArray::ParallelCopy_nowait() 41 0.03093 0.04599 0.05124 1.41% Castro::do_old_sources() 10 0.03891 0.04729 0.05057 1.39% StateDataPhysBCFunct::() 41 0.03815 0.04362 0.04708 1.30% StateData::FillBoundary(geom) 41 0.03803 0.04349 0.04694 1.29% Castro::normalize_species() 62 0.0403 0.04128 0.04205 1.16% Castro::construct_new_source() 50 0.02883 0.03052 0.03132 0.86% Gravity::interpolate_monopole_grav() 21 0.02636 0.02741 0.0278 0.77% Castro::post_init() 1 0.02443 0.02459 0.02477 0.68% Castro::construct_new_gravity_source() 10 0.0234 0.0238 0.02467 0.68% Amr::writePlotFile() 2 0.02284 0.02298 0.02316 0.64% Castro::apply_source_to_state() 20 0.01159 0.01536 0.0169 0.47% MultiFab::Saxpy() 20 0.01154 0.01531 0.01685 0.46% Castro::post_timestep() 10 0.0148 0.01571 0.01635 0.45% VisMF::Write(FabArray) 2 0.01059 0.0112 0.01358 0.37% Castro::check_for_nan() 20 0.01029 0.01164 0.0135 0.37% MultiFab::contains_nan() 20 0.01027 0.01161 0.01343 0.37% FabArray::setDomainBndry() 41 0.00631 0.01142 0.01293 0.36% Castro::construct_old_source() 50 0.007271 0.01099 0.01258 0.35% Castro::construct_old_gravity_source() 10 0.007222 0.01092 0.01249 0.34% Castro::Castro() 1 0.009223 0.009834 0.0106 0.29% Castro::computeNewDt() 9 0.007113 0.007123 0.007129 0.20% Castro::enforce_min_density() 62 0.005733 0.006162 0.00674 0.19% Castro::initMFs() 1 0.005507 0.0059 0.006478 0.18% AmrLevel::AmrLevel(dm) 1 0.00456 0.004816 0.005086 0.14% StateData::define() 4 0.004532 0.004796 0.005066 0.14% Castro::swap_state_time_levels() 10 0.002952 0.003834 0.003978 0.11% Castro::post_regrid() 1 0.001523 0.00161 0.00183 0.05% Castro::buildMetrics() 1 0.001404 0.001488 0.001599 0.04% Castro::finalize_do_advance() 10 0.001145 0.001221 0.001304 0.04% Amr::InitAmr() 1 0.0002809 0.0003105 0.0004395 0.01% Amr::writeSmallPlotFile() 1 5.844e-05 0.0001072 0.0004154 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.365e-05 0.0001472 0.0001771 0.00% DistributionMapping::LeastUsedCPUs() 1 8.53e-06 0.0001417 0.0001702 0.00% Castro::enforce_consistent_e() 1 7.745e-05 9.002e-05 0.000126 0.00% FabArrayBase::getCPC() 41 8.449e-05 9.124e-05 0.0001 0.00% Castro::finalize_advance() 10 6.138e-05 6.824e-05 7.448e-05 0.00% Castro::enforce_speed_limit() 62 3.068e-05 3.311e-05 3.665e-05 0.00% FabArrayBase::CPC::define() 2 2.371e-05 2.794e-05 3.202e-05 0.00% Gravity::swapTimeLevels() 10 9.389e-06 1.392e-05 1.718e-05 0.00% Castro::create_source_corrector() 10 7.38e-06 1.036e-05 1.356e-05 0.00% Gravity::set_mass_offset() 10 7.917e-06 1.032e-05 1.282e-05 0.00% Castro::FluxRegCrseInit 10 7.865e-06 1.055e-05 1.238e-05 0.00% Amr::initSubcycle() 1 8.163e-06 8.757e-06 9.179e-06 0.00% Castro::retry_advance_ctu() 10 5.638e-06 6.577e-06 7.791e-06 0.00% Castro::FluxRegFineAdd() 10 1.843e-06 2.472e-06 3.182e-06 0.00% DistributionMapping::Distribute() 1 9.89e-07 1.068e-06 1.216e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.07-13-g4b7e20057a3d) finalized