MPI initialized with 8 MPI processes
MPI initialized with thread support level 3
AMReX (22.07-16-gce0fb7412dff) initialized
Starting run at 05:39:45 UTC on 2022-07-27.
Successfully read inputs file ...
Castro git describe: 22.07-13-g4177c4b30
AMReX git describe: 22.07-16-gce0fb7412
Microphysics git describe: 22.07-15-ga4952214
reading extern runtime parameters ...
3 Species:
C12 O16 Mg24
Successfully read inputs file ...
INITIAL GRIDS
Level 0 8 grids 262144 cells 100 % of domain
smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32
PLOTFILE: file = dustcollapse-3d-monopole_plt00000
Write plotfile time = 0.016626779 seconds
[Level 0 step 1] ADVANCE with dt = 4.541742215e-05
[Level 0 step 1] Advanced 262144 cells
[STEP 1] Coarse TimeStep time: 0.355804246
[STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998]
STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05
[Level 0 step 2] ADVANCE with dt = 4.768829326e-05
[Level 0 step 2] Advanced 262144 cells
[STEP 2] Coarse TimeStep time: 0.343457532
[STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998]
STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05
[Level 0 step 3] ADVANCE with dt = 5.007270792e-05
[Level 0 step 3] Advanced 262144 cells
[STEP 3] Coarse TimeStep time: 0.342103421
[STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998]
STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05
[Level 0 step 4] ADVANCE with dt = 5.257634331e-05
[Level 0 step 4] Advanced 262144 cells
[STEP 4] Coarse TimeStep time: 0.343647662
[STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998]
STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05
[Level 0 step 5] ADVANCE with dt = 5.520516048e-05
[Level 0 step 5] Advanced 262144 cells
[STEP 5] Coarse TimeStep time: 0.353337908
[STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998]
STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05
[Level 0 step 6] ADVANCE with dt = 5.79654185e-05
[Level 0 step 6] Advanced 262144 cells
[STEP 6] Coarse TimeStep time: 0.351859375
[STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998]
STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05
[Level 0 step 7] ADVANCE with dt = 6.086368943e-05
[Level 0 step 7] Advanced 262144 cells
[STEP 7] Coarse TimeStep time: 0.337411652
[STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998]
STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05
[Level 0 step 8] ADVANCE with dt = 6.39068739e-05
[Level 0 step 8] Advanced 262144 cells
[STEP 8] Coarse TimeStep time: 0.339263273
[STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998]
STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05
[Level 0 step 9] ADVANCE with dt = 6.71022176e-05
[Level 0 step 9] Advanced 262144 cells
[STEP 9] Coarse TimeStep time: 0.340082274
[STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998]
STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05
[Level 0 step 10] ADVANCE with dt = 7.045732848e-05
[Level 0 step 10] Advanced 262144 cells
[STEP 10] Coarse TimeStep time: 0.340570795
[STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998]
STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05
PLOTFILE: file = dustcollapse-3d-monopole_plt00010
Write plotfile time = 0.010761056 seconds
Ending run at 05:39:49 UTC on 2022-07-27.
Run time = 3.663960541
Run time without initialization = 3.466260465
Average number of zones advanced per microsecond: 0.756
Average number of zones advanced per microsecond per rank: 0.095
TinyProfiler total time across processes [min...avg...max]: 3.661 ... 3.663 ... 3.664
-------------------------------------------------------------------------------------------
Name NCalls Excl. Min Excl. Avg Excl. Max Max %
-------------------------------------------------------------------------------------------
Castro::construct_ctu_hydro_source() 10 2.1333 2.4194 2.5208 68.80%
Castro::do_advance_ctu() 10 0.02962 0.1305 0.4189 11.43%
Gravity::make_radial_gravity() 21 0.3493 0.3632 0.3883 10.60%
FabArray::ParallelCopy_finish() 41 0.0436 0.06448 0.1248 3.41%
Castro::initData() 1 0.06519 0.08432 0.1178 3.22%
Castro::estTimeStep() 21 0.02681 0.06114 0.08013 2.19%
FabArray::setVal() 143 0.06093 0.06845 0.07065 1.93%
Castro::reset_internal_energy(Fab) 1008 0.04787 0.04981 0.05216 1.42%
FabArray::ParallelCopy_nowait() 41 0.0279 0.04542 0.05161 1.41%
StateData::FillBoundary(geom) 41 0.03746 0.04212 0.04587 1.25%
Castro::normalize_species() 62 0.03974 0.04201 0.04371 1.19%
FillPatchIterator::Initialize 41 0.0244 0.03634 0.04072 1.11%
Gravity::interpolate_monopole_grav() 21 0.02668 0.02766 0.02837 0.77%
Castro::construct_new_gravity_source() 10 0.02022 0.02301 0.02391 0.65%
Castro::expand_state() 10 0.009698 0.01808 0.02133 0.58%
Castro::computeTemp() 63 0.01758 0.01876 0.0206 0.56%
Castro::initialize_do_advance() 10 0.01022 0.01742 0.01955 0.53%
VisMF::Write(FabArray) 2 0.01339 0.01408 0.017 0.46%
MultiFab::Saxpy() 20 0.008607 0.01442 0.0164 0.45%
Amr::writePlotFile() 2 0.0106 0.01344 0.01464 0.40%
MultiFab::contains_nan() 20 0.009495 0.01156 0.01295 0.35%
Gravity::get_new_grav_vector() 11 0.007392 0.01157 0.01295 0.35%
FabArray::setDomainBndry() 41 0.004812 0.01042 0.01265 0.35%
Castro::construct_old_gravity_source() 10 0.004908 0.01019 0.0119 0.32%
Castro::initialize_advance() 10 0.006598 0.01 0.01082 0.30%
Gravity::get_old_grav_vector() 10 0.005415 0.00929 0.01068 0.29%
Castro::initMFs() 1 0.006821 0.00796 0.01026 0.28%
StateData::define() 4 0.005671 0.00656 0.008342 0.23%
Castro::construct_new_source() 50 0.00475 0.006558 0.007256 0.20%
main() 1 0.004057 0.006205 0.007247 0.20%
Castro::enforce_min_density() 62 0.005044 0.00602 0.006428 0.18%
Castro::swap_state_time_levels() 10 0.003333 0.004482 0.005231 0.14%
Amr::coarseTimeStep() 10 0.000812 0.002046 0.003834 0.10%
Castro::buildMetrics() 1 0.001656 0.001897 0.002403 0.07%
Castro::finalize_do_advance() 10 0.0006628 0.001406 0.001675 0.05%
Amr::InitAmr() 1 0.0003025 0.0003757 0.0006487 0.02%
Amr::timeStep() 10 0.0001785 0.0002448 0.0005577 0.02%
DistributionMapping::LeastUsedCPUs() 1 8.298e-06 0.0003411 0.000428 0.01%
Castro::reset_internal_energy(MultiFab) 63 0.0002648 0.0002971 0.0003221 0.01%
Castro::clean_state() 62 0.0001094 0.0001576 0.0001797 0.00%
Castro::enforce_consistent_e() 1 7.708e-05 0.0001092 0.0001694 0.00%
StateDataPhysBCFunct::() 41 8.245e-05 0.0001385 0.0001578 0.00%
Castro::construct_old_source() 50 3.297e-05 6.587e-05 8.662e-05 0.00%
FabArray::ParallelCopy() 41 6.091e-05 7.503e-05 8.374e-05 0.00%
FillPatchSingleLevel 41 4.553e-05 6.308e-05 8.084e-05 0.00%
Amr::FinalizeInit() 1 3.994e-06 1.429e-05 8.01e-05 0.00%
Castro::do_new_sources() 10 3.856e-05 6.536e-05 8.003e-05 0.00%
Amr::writeSmallPlotFile() 1 2.88e-05 6.549e-05 7.721e-05 0.00%
Castro::do_old_sources() 10 3.158e-05 6.201e-05 7.565e-05 0.00%
Castro::Castro() 1 5.287e-05 5.959e-05 7.376e-05 0.00%
Castro::apply_source_to_state() 20 2.682e-05 4.74e-05 6.844e-05 0.00%
Castro::subcycle_advance_ctu() 10 2.762e-05 4.479e-05 6.318e-05 0.00%
FabArrayBase::getCPC() 41 3.781e-05 5.475e-05 6.225e-05 0.00%
Castro::finalize_advance() 10 4.294e-05 5.035e-05 5.673e-05 0.00%
Castro::construct_old_gravity() 10 2.828e-05 4.536e-05 5.207e-05 0.00%
Castro::construct_new_gravity() 10 3.156e-05 4.398e-05 4.984e-05 0.00%
Castro::advance() 10 2.773e-05 4.038e-05 4.803e-05 0.00%
AmrLevel::AmrLevel(dm) 1 1.389e-05 2.146e-05 3.803e-05 0.00%
Castro::enforce_speed_limit() 62 2.197e-05 3.044e-05 3.437e-05 0.00%
Amr::defBaseLevel() 1 1.833e-05 2.311e-05 3.366e-05 0.00%
FabArrayBase::CPC::define() 2 2.163e-05 2.487e-05 2.945e-05 0.00%
Castro::check_for_nan() 20 1.772e-05 2.194e-05 2.502e-05 0.00%
Gravity::swapTimeLevels() 10 5.412e-06 1.143e-05 1.46e-05 0.00%
Castro::post_timestep() 10 1.006e-05 1.289e-05 1.45e-05 0.00%
Amr::initSubcycle() 1 8.393e-06 1.05e-05 1.448e-05 0.00%
Gravity::set_mass_offset() 10 6.182e-06 9.56e-06 1.282e-05 0.00%
Castro::FluxRegCrseInit 10 7.734e-06 1.033e-05 1.278e-05 0.00%
Castro::create_source_corrector() 10 7.028e-06 9.607e-06 1.254e-05 0.00%
Castro::computeNewDt() 9 7.046e-06 9.076e-06 1.013e-05 0.00%
Amr::InitializeInit() 1 2.143e-06 4.323e-06 9.43e-06 0.00%
Castro::retry_advance_ctu() 10 3.97e-06 5.897e-06 7.694e-06 0.00%
DistributionMapping::SFCProcessorMapDoIt() 1 3.807e-06 5.35e-06 6.951e-06 0.00%
Castro::computeInitialDt() 2 3.03e-06 4.542e-06 5.924e-06 0.00%
Castro::post_init() 1 2.424e-06 3.605e-06 4.721e-06 0.00%
Castro::post_regrid() 1 1.59e-06 2.975e-06 4.406e-06 0.00%
Castro::FluxRegFineAdd() 10 1.947e-06 2.478e-06 2.981e-06 0.00%
Amr::init() 1 1.548e-06 1.934e-06 2.56e-06 0.00%
Amr::initialInit() 1 1.101e-06 1.512e-06 2.094e-06 0.00%
DistributionMapping::Distribute() 1 1.06e-06 1.231e-06 1.416e-06 0.00%
-------------------------------------------------------------------------------------------
-------------------------------------------------------------------------------------------
Name NCalls Incl. Min Incl. Avg Incl. Max Max %
-------------------------------------------------------------------------------------------
main() 1 3.661 3.663 3.664 100.00%
Amr::coarseTimeStep() 10 3.448 3.448 3.448 94.11%
Amr::timeStep() 10 3.436 3.438 3.439 93.86%
Castro::advance() 10 3.421 3.422 3.422 93.40%
Castro::subcycle_advance_ctu() 10 3.348 3.351 3.356 91.59%
Castro::do_advance_ctu() 10 3.348 3.35 3.356 91.59%
Castro::construct_ctu_hydro_source() 10 2.133 2.419 2.521 68.80%
Gravity::make_radial_gravity() 21 0.3493 0.3632 0.3883 10.60%
Gravity::get_new_grav_vector() 11 0.2379 0.2427 0.2454 6.70%
Castro::construct_old_gravity() 10 0.1972 0.2106 0.2288 6.24%
Gravity::get_old_grav_vector() 10 0.1964 0.2099 0.2282 6.23%
FillPatchIterator::Initialize 41 0.1893 0.1991 0.2196 5.99%
Castro::construct_new_gravity() 10 0.2018 0.2054 0.2075 5.66%
Amr::init() 1 0.1969 0.1972 0.1973 5.38%
FillPatchSingleLevel 41 0.1367 0.1524 0.1904 5.20%
Castro::initialize_do_advance() 10 0.1695 0.1801 0.1902 5.19%
Amr::initialInit() 1 0.1801 0.1805 0.1808 4.93%
FabArray::ParallelCopy() 41 0.09448 0.1101 0.1528 4.17%
Castro::expand_state() 10 0.1269 0.1326 0.1412 3.85%
Amr::InitializeInit() 1 0.0858 0.1073 0.1399 3.82%
Amr::defBaseLevel() 1 0.08579 0.1073 0.1399 3.82%
FabArray::ParallelCopy_finish() 41 0.0436 0.06448 0.1248 3.41%
Castro::clean_state() 62 0.1101 0.116 0.1217 3.32%
Castro::initData() 1 0.06881 0.08858 0.1214 3.31%
Amr::FinalizeInit() 1 0.04019 0.07321 0.09499 2.59%
Castro::estTimeStep() 21 0.02681 0.06114 0.08013 2.19%
Castro::initialize_advance() 10 0.06504 0.07127 0.07345 2.00%
Castro::computeTemp() 63 0.06601 0.06887 0.07309 1.99%
FabArray::setVal() 143 0.06093 0.06845 0.07065 1.93%
Castro::do_new_sources() 10 0.0535 0.06298 0.065 1.77%
Castro::computeInitialDt() 2 0.001592 0.0341 0.05571 1.52%
Castro::reset_internal_energy(MultiFab) 63 0.04814 0.05011 0.05248 1.43%
Castro::reset_internal_energy(Fab) 1008 0.04787 0.04981 0.05216 1.42%
FabArray::ParallelCopy_nowait() 41 0.02796 0.0455 0.05169 1.41%
Castro::do_old_sources() 10 0.03251 0.0451 0.04891 1.33%
StateDataPhysBCFunct::() 41 0.03754 0.04225 0.04603 1.26%
StateData::FillBoundary(geom) 41 0.03746 0.04212 0.04587 1.25%
Castro::normalize_species() 62 0.03974 0.04201 0.04371 1.19%
Castro::post_init() 1 0.03688 0.03809 0.03862 1.05%
Castro::construct_new_source() 50 0.02497 0.02957 0.03074 0.84%
Gravity::interpolate_monopole_grav() 21 0.02668 0.02766 0.02837 0.77%
Amr::writePlotFile() 2 0.0271 0.02752 0.02802 0.76%
Castro::construct_new_gravity_source() 10 0.02022 0.02301 0.02391 0.65%
VisMF::Write(FabArray) 2 0.01339 0.01408 0.017 0.46%
Castro::post_timestep() 10 0.01412 0.01585 0.01659 0.45%
Castro::apply_source_to_state() 20 0.008633 0.01447 0.01647 0.45%
MultiFab::Saxpy() 20 0.008607 0.01442 0.0164 0.45%
Castro::Castro() 1 0.01044 0.01178 0.01446 0.39%
Castro::check_for_nan() 20 0.009513 0.01158 0.01298 0.35%
MultiFab::contains_nan() 20 0.009495 0.01156 0.01295 0.35%
FabArray::setDomainBndry() 41 0.004812 0.01042 0.01265 0.35%
Castro::construct_old_source() 50 0.004941 0.01026 0.01199 0.33%
Castro::construct_old_gravity_source() 10 0.004908 0.01019 0.0119 0.32%
Castro::initMFs() 1 0.006821 0.00796 0.01026 0.28%
AmrLevel::AmrLevel(dm) 1 0.005688 0.006581 0.008372 0.23%
StateData::define() 4 0.005671 0.00656 0.008342 0.23%
Castro::computeNewDt() 9 0.007352 0.007361 0.007366 0.20%
Castro::enforce_min_density() 62 0.005044 0.00602 0.006428 0.18%
Castro::swap_state_time_levels() 10 0.003333 0.004482 0.005231 0.14%
Castro::post_regrid() 1 0.0015 0.001922 0.003012 0.08%
Castro::buildMetrics() 1 0.001769 0.002043 0.002621 0.07%
Castro::finalize_do_advance() 10 0.0006628 0.001406 0.001675 0.05%
Amr::InitAmr() 1 0.0003118 0.0003862 0.0006632 0.02%
DistributionMapping::SFCProcessorMapDoIt() 1 1.35e-05 0.0003477 0.0004355 0.01%
DistributionMapping::LeastUsedCPUs() 1 8.298e-06 0.0003411 0.000428 0.01%
Castro::enforce_consistent_e() 1 7.708e-05 0.0001092 0.0001694 0.00%
FabArrayBase::getCPC() 41 6.447e-05 7.962e-05 8.684e-05 0.00%
Amr::writeSmallPlotFile() 1 2.88e-05 6.549e-05 7.721e-05 0.00%
Castro::finalize_advance() 10 5.269e-05 6.316e-05 6.788e-05 0.00%
Castro::enforce_speed_limit() 62 2.197e-05 3.044e-05 3.437e-05 0.00%
FabArrayBase::CPC::define() 2 2.163e-05 2.487e-05 2.945e-05 0.00%
Gravity::swapTimeLevels() 10 5.412e-06 1.143e-05 1.46e-05 0.00%
Amr::initSubcycle() 1 8.393e-06 1.05e-05 1.448e-05 0.00%
Gravity::set_mass_offset() 10 6.182e-06 9.56e-06 1.282e-05 0.00%
Castro::FluxRegCrseInit 10 7.734e-06 1.033e-05 1.278e-05 0.00%
Castro::create_source_corrector() 10 7.028e-06 9.607e-06 1.254e-05 0.00%
Castro::retry_advance_ctu() 10 3.97e-06 5.897e-06 7.694e-06 0.00%
Castro::FluxRegFineAdd() 10 1.947e-06 2.478e-06 2.981e-06 0.00%
DistributionMapping::Distribute() 1 1.06e-06 1.231e-06 1.416e-06 0.00%
-------------------------------------------------------------------------------------------
Unused ParmParse Variables:
[TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2]
[TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2]
AMReX (22.07-16-gce0fb7412dff) finalized