MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.07-18-g6a47d89fd12c) initialized Starting run at 05:39:26 UTC on 2022-07-28. Successfully read inputs file ... Castro git describe: 22.07-13-g4177c4b30 AMReX git describe: 22.07-18-g6a47d89fd Microphysics git describe: 22.07-15-ga4952214 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.01517953 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.35660622 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.34142318 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.339617214 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.340864807 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.352059421 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.380553363 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.337310871 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.336562777 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.339067729 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.338334488 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010601264 seconds Ending run at 05:39:29 UTC on 2022-07-28. Run time = 3.678119714 Run time without initialization = 3.481038315 Average number of zones advanced per microsecond: 0.753 Average number of zones advanced per microsecond per rank: 0.094 TinyProfiler total time across processes [min...avg...max]: 3.676 ... 3.678 ... 3.678 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1268 2.4028 2.5254 68.66% Castro::do_advance_ctu() 10 0.03972 0.1632 0.4423 12.02% Gravity::make_radial_gravity() 21 0.3363 0.3499 0.3736 10.16% FabArray::ParallelCopy_finish() 41 0.0452 0.06477 0.1324 3.60% Castro::initData() 1 0.03958 0.08217 0.1269 3.45% Castro::estTimeStep() 21 0.02985 0.0813 0.125 3.40% FabArray::setVal() 143 0.05648 0.06751 0.07053 1.92% Castro::reset_internal_energy(Fab) 1008 0.04538 0.04942 0.05144 1.40% FabArray::ParallelCopy_nowait() 41 0.02743 0.04465 0.05063 1.38% StateData::FillBoundary(geom) 41 0.03454 0.0419 0.04613 1.25% Castro::normalize_species() 62 0.03931 0.04146 0.04264 1.16% FillPatchIterator::Initialize 41 0.02322 0.03567 0.03989 1.08% Gravity::interpolate_monopole_grav() 21 0.02623 0.02742 0.02797 0.76% Castro::construct_new_gravity_source() 10 0.01998 0.02298 0.02478 0.67% Castro::expand_state() 10 0.009728 0.01882 0.02177 0.59% Castro::computeTemp() 63 0.01801 0.01885 0.01965 0.53% Castro::initialize_do_advance() 10 0.009359 0.01717 0.01915 0.52% MultiFab::Saxpy() 20 0.008685 0.01459 0.01646 0.45% VisMF::Write(FabArray) 2 0.01237 0.0132 0.01571 0.43% Amr::writePlotFile() 2 0.01033 0.01277 0.01381 0.38% Gravity::get_new_grav_vector() 11 0.007286 0.0115 0.01292 0.35% FabArray::setDomainBndry() 41 0.004836 0.01046 0.0125 0.34% MultiFab::contains_nan() 20 0.0096 0.01095 0.01241 0.34% Castro::construct_old_gravity_source() 10 0.004932 0.0101 0.01169 0.32% Gravity::get_old_grav_vector() 10 0.00541 0.009383 0.01085 0.29% Castro::initMFs() 1 0.006618 0.007756 0.01036 0.28% Castro::initialize_advance() 10 0.003201 0.008688 0.0101 0.27% StateData::define() 4 0.005518 0.006308 0.008196 0.22% Castro::enforce_min_density() 62 0.005888 0.006696 0.007239 0.20% main() 1 0.004619 0.006638 0.00723 0.20% Castro::construct_new_source() 50 0.004857 0.006512 0.007108 0.19% Castro::swap_state_time_levels() 10 0.003235 0.004247 0.004599 0.13% Amr::coarseTimeStep() 10 0.00143 0.002074 0.003834 0.10% Castro::buildMetrics() 1 0.001562 0.001803 0.002363 0.06% Castro::finalize_do_advance() 10 0.0006468 0.00138 0.001604 0.04% Amr::timeStep() 10 0.0001806 0.0002441 0.0005497 0.01% Amr::InitAmr() 1 0.0002956 0.0003687 0.0004907 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002804 0.0003019 0.0003209 0.01% DistributionMapping::LeastUsedCPUs() 1 8.177e-06 0.0001653 0.000253 0.01% Castro::clean_state() 62 0.00013 0.0001547 0.0001623 0.00% StateDataPhysBCFunct::() 41 0.0001045 0.0001262 0.0001361 0.00% Castro::enforce_consistent_e() 1 7.513e-05 8.605e-05 0.0001037 0.00% FabArray::ParallelCopy() 41 6.154e-05 8.464e-05 9.443e-05 0.00% Amr::FinalizeInit() 1 3.435e-06 1.597e-05 9.021e-05 0.00% Castro::do_new_sources() 10 4.185e-05 7.044e-05 8.691e-05 0.00% Castro::construct_old_source() 50 3.259e-05 6.972e-05 8.672e-05 0.00% Castro::do_old_sources() 10 4.17e-05 6.736e-05 7.79e-05 0.00% Amr::writeSmallPlotFile() 1 4.025e-05 6.677e-05 7.525e-05 0.00% Castro::Castro() 1 5.49e-05 6.326e-05 7.511e-05 0.00% FabArrayBase::getCPC() 41 5.294e-05 5.853e-05 7.283e-05 0.00% FillPatchSingleLevel 41 5.399e-05 6.394e-05 6.931e-05 0.00% Castro::apply_source_to_state() 20 3.258e-05 4.705e-05 6.428e-05 0.00% Castro::subcycle_advance_ctu() 10 3.06e-05 4.699e-05 5.911e-05 0.00% Castro::construct_old_gravity() 10 3.308e-05 5.06e-05 5.843e-05 0.00% Castro::finalize_advance() 10 4.855e-05 5.419e-05 5.783e-05 0.00% Castro::construct_new_gravity() 10 3.446e-05 4.567e-05 5.174e-05 0.00% Castro::advance() 10 3.05e-05 4.318e-05 4.999e-05 0.00% Castro::check_for_nan() 20 2.278e-05 2.65e-05 3.785e-05 0.00% Amr::defBaseLevel() 1 1.929e-05 2.942e-05 3.64e-05 0.00% FabArrayBase::CPC::define() 2 2.079e-05 2.496e-05 3.214e-05 0.00% Castro::enforce_speed_limit() 62 2.365e-05 2.715e-05 3.17e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.419e-05 2.437e-05 3.059e-05 0.00% Castro::post_timestep() 10 2.093e-05 2.573e-05 2.854e-05 0.00% Gravity::swapTimeLevels() 10 6.067e-06 1.232e-05 1.564e-05 0.00% Amr::initSubcycle() 1 8.479e-06 1.043e-05 1.492e-05 0.00% Castro::create_source_corrector() 10 6.318e-06 1.061e-05 1.461e-05 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.568e-06 5.271e-06 1.223e-05 0.00% Castro::post_init() 1 3.516e-06 4.854e-06 1.161e-05 0.00% Castro::computeNewDt() 9 8.101e-06 9.955e-06 1.157e-05 0.00% Gravity::set_mass_offset() 10 6.539e-06 9.155e-06 1.089e-05 0.00% Castro::FluxRegCrseInit 10 6.64e-06 8.766e-06 1.068e-05 0.00% Castro::retry_advance_ctu() 10 4.018e-06 6.189e-06 8.261e-06 0.00% Amr::InitializeInit() 1 2.172e-06 3.366e-06 6.663e-06 0.00% Castro::post_regrid() 1 1.671e-06 3.196e-06 6.337e-06 0.00% Castro::computeInitialDt() 2 3.247e-06 4.104e-06 5.148e-06 0.00% Castro::FluxRegFineAdd() 10 1.899e-06 2.394e-06 3.156e-06 0.00% Amr::init() 1 1.845e-06 2.241e-06 2.612e-06 0.00% Amr::initialInit() 1 1.245e-06 1.59e-06 2.11e-06 0.00% DistributionMapping::Distribute() 1 8.86e-07 1.117e-06 1.367e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.676 3.678 3.678 100.00% Amr::coarseTimeStep() 10 3.463 3.463 3.463 94.16% Amr::timeStep() 10 3.451 3.453 3.454 93.89% Castro::advance() 10 3.436 3.437 3.437 93.44% Castro::subcycle_advance_ctu() 10 3.365 3.368 3.38 91.89% Castro::do_advance_ctu() 10 3.365 3.368 3.38 91.89% Castro::construct_ctu_hydro_source() 10 2.127 2.403 2.525 68.66% Gravity::make_radial_gravity() 21 0.3363 0.3499 0.3736 10.16% Gravity::get_new_grav_vector() 11 0.2272 0.2298 0.2314 6.29% Castro::construct_old_gravity() 10 0.1987 0.2107 0.2293 6.23% Gravity::get_old_grav_vector() 10 0.1978 0.2099 0.2288 6.22% FillPatchIterator::Initialize 41 0.1896 0.1978 0.2258 6.14% Castro::construct_new_gravity() 10 0.2031 0.2052 0.2066 5.62% FillPatchSingleLevel 41 0.1382 0.1517 0.1977 5.38% Amr::init() 1 0.1964 0.1966 0.1967 5.35% Castro::initialize_do_advance() 10 0.166 0.1797 0.1872 5.09% Amr::initialInit() 1 0.181 0.1813 0.1815 4.94% FabArray::ParallelCopy() 41 0.09528 0.1096 0.16 4.35% Amr::InitializeInit() 1 0.05972 0.1041 0.1535 4.17% Amr::defBaseLevel() 1 0.05971 0.1041 0.1535 4.17% Castro::expand_state() 10 0.1214 0.1324 0.1378 3.75% FabArray::ParallelCopy_finish() 41 0.0452 0.06477 0.1324 3.60% Castro::initData() 1 0.04337 0.08594 0.1307 3.55% Castro::estTimeStep() 21 0.02985 0.0813 0.125 3.40% Amr::FinalizeInit() 1 0.02767 0.0772 0.1214 3.30% Castro::clean_state() 62 0.1092 0.116 0.1193 3.24% Castro::computeInitialDt() 2 0.001698 0.05122 0.0955 2.60% Castro::initialize_advance() 10 0.05583 0.06856 0.07157 1.95% Castro::computeTemp() 63 0.06469 0.06857 0.07137 1.94% FabArray::setVal() 143 0.05648 0.06751 0.07053 1.92% Castro::do_new_sources() 10 0.05378 0.06346 0.06723 1.83% Castro::reset_internal_energy(MultiFab) 63 0.04567 0.04972 0.05176 1.41% Castro::reset_internal_energy(Fab) 1008 0.04538 0.04942 0.05144 1.40% FabArray::ParallelCopy_nowait() 41 0.02752 0.04473 0.0507 1.38% Castro::do_old_sources() 10 0.03214 0.0451 0.04885 1.33% StateDataPhysBCFunct::() 41 0.03464 0.04202 0.04626 1.26% StateData::FillBoundary(geom) 41 0.03454 0.0419 0.04613 1.25% Castro::normalize_species() 62 0.03931 0.04146 0.04264 1.16% Castro::construct_new_source() 50 0.02484 0.0295 0.03052 0.83% Gravity::interpolate_monopole_grav() 21 0.02623 0.02742 0.02797 0.76% Amr::writePlotFile() 2 0.02583 0.02597 0.02618 0.71% Castro::post_init() 1 0.02511 0.02531 0.02547 0.69% Castro::construct_new_gravity_source() 10 0.01998 0.02298 0.02478 0.67% Castro::post_timestep() 10 0.01507 0.01608 0.01663 0.45% Castro::apply_source_to_state() 20 0.008721 0.01464 0.01652 0.45% MultiFab::Saxpy() 20 0.008685 0.01459 0.01646 0.45% VisMF::Write(FabArray) 2 0.01237 0.0132 0.01571 0.43% Castro::Castro() 1 0.01043 0.01164 0.01456 0.40% FabArray::setDomainBndry() 41 0.004836 0.01046 0.0125 0.34% Castro::check_for_nan() 20 0.009637 0.01098 0.01243 0.34% MultiFab::contains_nan() 20 0.0096 0.01095 0.01241 0.34% Castro::construct_old_source() 50 0.004964 0.01017 0.01177 0.32% Castro::construct_old_gravity_source() 10 0.004932 0.0101 0.01169 0.32% Castro::initMFs() 1 0.006618 0.007756 0.01036 0.28% AmrLevel::AmrLevel(dm) 1 0.005533 0.006332 0.008225 0.22% StateData::define() 4 0.005518 0.006308 0.008196 0.22% Castro::computeNewDt() 9 0.007309 0.007314 0.007317 0.20% Castro::enforce_min_density() 62 0.005888 0.006696 0.007239 0.20% Castro::swap_state_time_levels() 10 0.003235 0.004247 0.004599 0.13% Castro::buildMetrics() 1 0.001676 0.001948 0.002579 0.07% Castro::post_regrid() 1 0.001524 0.00156 0.001633 0.04% Castro::finalize_do_advance() 10 0.0006468 0.00138 0.001604 0.04% Amr::InitAmr() 1 0.0003042 0.0003791 0.0005048 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.396e-05 0.0001717 0.0002665 0.01% DistributionMapping::LeastUsedCPUs() 1 8.177e-06 0.0001653 0.000253 0.01% Castro::enforce_consistent_e() 1 7.513e-05 8.605e-05 0.0001037 0.00% FabArrayBase::getCPC() 41 7.463e-05 8.349e-05 9.987e-05 0.00% Amr::writeSmallPlotFile() 1 4.025e-05 6.677e-05 7.525e-05 0.00% Castro::finalize_advance() 10 5.718e-05 6.536e-05 6.964e-05 0.00% FabArrayBase::CPC::define() 2 2.079e-05 2.496e-05 3.214e-05 0.00% Castro::enforce_speed_limit() 62 2.365e-05 2.715e-05 3.17e-05 0.00% Gravity::swapTimeLevels() 10 6.067e-06 1.232e-05 1.564e-05 0.00% Amr::initSubcycle() 1 8.479e-06 1.043e-05 1.492e-05 0.00% Castro::create_source_corrector() 10 6.318e-06 1.061e-05 1.461e-05 0.00% Gravity::set_mass_offset() 10 6.539e-06 9.155e-06 1.089e-05 0.00% Castro::FluxRegCrseInit 10 6.64e-06 8.766e-06 1.068e-05 0.00% Castro::retry_advance_ctu() 10 4.018e-06 6.189e-06 8.261e-06 0.00% Castro::FluxRegFineAdd() 10 1.899e-06 2.394e-06 3.156e-06 0.00% DistributionMapping::Distribute() 1 8.86e-07 1.117e-06 1.367e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.07-18-g6a47d89fd12c) finalized