MPI initialized with 8 MPI processes
MPI initialized with thread support level 3
AMReX (22.08-1-g94693291667b) initialized
Starting run at 05:39:03 UTC on 2022-08-02.
Successfully read inputs file ...
Castro git describe: 22.08
AMReX git describe: 22.08-1-g946932916
Microphysics git describe: 22.08
reading extern runtime parameters ...
3 Species:
C12 O16 Mg24
Successfully read inputs file ...
INITIAL GRIDS
Level 0 8 grids 262144 cells 100 % of domain
smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32
PLOTFILE: file = dustcollapse-3d-monopole_plt00000
Write plotfile time = 0.015444504 seconds
[Level 0 step 1] ADVANCE with dt = 4.541742215e-05
[Level 0 step 1] Advanced 262144 cells
[STEP 1] Coarse TimeStep time: 0.36576069
[STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998]
STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05
[Level 0 step 2] ADVANCE with dt = 4.768829326e-05
[Level 0 step 2] Advanced 262144 cells
[STEP 2] Coarse TimeStep time: 0.344518818
[STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998]
STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05
[Level 0 step 3] ADVANCE with dt = 5.007270792e-05
[Level 0 step 3] Advanced 262144 cells
[STEP 3] Coarse TimeStep time: 0.343579793
[STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998]
STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05
[Level 0 step 4] ADVANCE with dt = 5.257634331e-05
[Level 0 step 4] Advanced 262144 cells
[STEP 4] Coarse TimeStep time: 0.341900699
[STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998]
STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05
[Level 0 step 5] ADVANCE with dt = 5.520516048e-05
[Level 0 step 5] Advanced 262144 cells
[STEP 5] Coarse TimeStep time: 0.355878168
[STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998]
STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05
[Level 0 step 6] ADVANCE with dt = 5.79654185e-05
[Level 0 step 6] Advanced 262144 cells
[STEP 6] Coarse TimeStep time: 0.353665019
[STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998]
STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05
[Level 0 step 7] ADVANCE with dt = 6.086368943e-05
[Level 0 step 7] Advanced 262144 cells
[STEP 7] Coarse TimeStep time: 0.338164364
[STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998]
STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05
[Level 0 step 8] ADVANCE with dt = 6.39068739e-05
[Level 0 step 8] Advanced 262144 cells
[STEP 8] Coarse TimeStep time: 0.33935421
[STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998]
STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05
[Level 0 step 9] ADVANCE with dt = 6.71022176e-05
[Level 0 step 9] Advanced 262144 cells
[STEP 9] Coarse TimeStep time: 0.337764478
[STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998]
STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05
[Level 0 step 10] ADVANCE with dt = 7.045732848e-05
[Level 0 step 10] Advanced 262144 cells
[STEP 10] Coarse TimeStep time: 0.339087069
[STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998]
STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05
PLOTFILE: file = dustcollapse-3d-monopole_plt00010
Write plotfile time = 0.010312887 seconds
Ending run at 05:39:07 UTC on 2022-08-02.
Run time = 3.656719107
Run time without initialization = 3.477463967
Average number of zones advanced per microsecond: 0.754
Average number of zones advanced per microsecond per rank: 0.094
TinyProfiler total time across processes [min...avg...max]: 3.655 ... 3.656 ... 3.657
-------------------------------------------------------------------------------------------
Name NCalls Excl. Min Excl. Avg Excl. Max Max %
-------------------------------------------------------------------------------------------
Castro::construct_ctu_hydro_source() 10 2.1711 2.4127 2.5099 68.64%
Castro::do_advance_ctu() 10 0.04003 0.1382 0.3848 10.52%
Gravity::make_radial_gravity() 21 0.3391 0.3542 0.373 10.20%
Castro::initData() 1 0.0391 0.07718 0.1143 3.13%
Castro::estTimeStep() 21 0.03154 0.06804 0.1076 2.94%
FabArray::ParallelCopy_finish() 41 0.04626 0.06068 0.1044 2.85%
FabArray::setVal() 143 0.06969 0.07142 0.07305 2.00%
Castro::reset_internal_energy(Fab) 1008 0.04862 0.05004 0.05175 1.42%
FabArray::ParallelCopy_nowait() 41 0.03098 0.04519 0.05055 1.38%
StateData::FillBoundary(geom) 41 0.03744 0.04181 0.04643 1.27%
Castro::normalize_species() 62 0.04077 0.04204 0.04347 1.19%
FillPatchIterator::Initialize 41 0.02502 0.0366 0.04063 1.11%
Gravity::interpolate_monopole_grav() 21 0.02702 0.02766 0.02803 0.77%
Castro::construct_new_gravity_source() 10 0.02296 0.02391 0.02642 0.72%
Castro::expand_state() 10 0.009949 0.01804 0.02179 0.60%
Castro::computeTemp() 63 0.01773 0.01914 0.02024 0.55%
Castro::initialize_do_advance() 10 0.01043 0.0177 0.01988 0.54%
MultiFab::Saxpy() 20 0.01235 0.01503 0.0163 0.45%
VisMF::Write(FabArray) 2 0.01216 0.01291 0.01553 0.42%
Amr::writePlotFile() 2 0.01046 0.0131 0.01377 0.38%
Gravity::get_new_grav_vector() 11 0.01023 0.01223 0.01334 0.36%
MultiFab::contains_nan() 20 0.0107 0.01154 0.01293 0.35%
FabArray::setDomainBndry() 41 0.004999 0.0105 0.01246 0.34%
Castro::construct_old_gravity_source() 10 0.005798 0.01058 0.01224 0.33%
Castro::initialize_advance() 10 0.01064 0.01091 0.01137 0.31%
Gravity::get_old_grav_vector() 10 0.006282 0.009636 0.01118 0.31%
StateData::define() 4 0.005557 0.006332 0.008208 0.22%
Castro::initMFs() 1 0.006621 0.007128 0.00812 0.22%
Castro::construct_new_source() 50 0.005324 0.00666 0.00721 0.20%
Castro::enforce_min_density() 62 0.006224 0.006762 0.007209 0.20%
main() 1 0.004563 0.00616 0.00684 0.19%
Castro::swap_state_time_levels() 10 0.003454 0.00463 0.004827 0.13%
Amr::coarseTimeStep() 10 0.0008192 0.001668 0.003231 0.09%
Castro::buildMetrics() 1 0.001563 0.001795 0.00234 0.06%
Castro::finalize_do_advance() 10 0.0006587 0.001412 0.001659 0.05%
Amr::InitAmr() 1 0.0002735 0.0003483 0.0004878 0.01%
Amr::timeStep() 10 0.00017 0.0002525 0.0004682 0.01%
Castro::reset_internal_energy(MultiFab) 63 0.0002857 0.0003064 0.0003307 0.01%
DistributionMapping::LeastUsedCPUs() 1 6.759e-06 0.0001744 0.0002607 0.01%
Castro::clean_state() 62 0.0001373 0.0001583 0.0001798 0.00%
StateDataPhysBCFunct::() 41 0.0001081 0.0001341 0.0001593 0.00%
Amr::FinalizeInit() 1 3.866e-06 1.826e-05 0.0001132 0.00%
Castro::enforce_consistent_e() 1 8.048e-05 8.973e-05 0.0001094 0.00%
FabArray::ParallelCopy() 41 8.522e-05 9.223e-05 9.985e-05 0.00%
Castro::construct_old_source() 50 4.005e-05 7.318e-05 9.351e-05 0.00%
Castro::do_new_sources() 10 5.173e-05 7.719e-05 9.271e-05 0.00%
Castro::do_old_sources() 10 4.612e-05 7.091e-05 8.12e-05 0.00%
FillPatchSingleLevel 41 6.257e-05 7.132e-05 8.005e-05 0.00%
Castro::Castro() 1 4.772e-05 5.864e-05 7.444e-05 0.00%
Amr::writeSmallPlotFile() 1 2.549e-05 6.05e-05 7.361e-05 0.00%
FabArrayBase::getCPC() 41 4.892e-05 5.961e-05 7.18e-05 0.00%
Castro::advance() 10 3.829e-05 4.61e-05 7.092e-05 0.00%
Castro::apply_source_to_state() 20 3.834e-05 4.881e-05 6.583e-05 0.00%
Castro::construct_old_gravity() 10 4.109e-05 5.321e-05 6.58e-05 0.00%
Castro::finalize_advance() 10 5.078e-05 5.431e-05 5.818e-05 0.00%
Castro::subcycle_advance_ctu() 10 3.756e-05 4.846e-05 5.638e-05 0.00%
Castro::construct_new_gravity() 10 3.907e-05 4.733e-05 5.341e-05 0.00%
FabArrayBase::CPC::define() 2 2.388e-05 2.772e-05 3.843e-05 0.00%
Amr::defBaseLevel() 1 1.729e-05 2.526e-05 3.461e-05 0.00%
Castro::enforce_speed_limit() 62 2.493e-05 2.793e-05 3.31e-05 0.00%
Castro::post_timestep() 10 1.445e-05 2.119e-05 2.905e-05 0.00%
Castro::check_for_nan() 20 1.986e-05 2.383e-05 2.815e-05 0.00%
AmrLevel::AmrLevel(dm) 1 1.197e-05 1.731e-05 2.591e-05 0.00%
Amr::initSubcycle() 1 8.22e-06 1.032e-05 1.545e-05 0.00%
Gravity::swapTimeLevels() 10 6.741e-06 1.179e-05 1.497e-05 0.00%
Castro::create_source_corrector() 10 7.167e-06 1.105e-05 1.383e-05 0.00%
Castro::computeNewDt() 9 6.768e-06 9.261e-06 1.188e-05 0.00%
Gravity::set_mass_offset() 10 6.492e-06 9.251e-06 1.142e-05 0.00%
Castro::post_init() 1 2.936e-06 6.368e-06 1.096e-05 0.00%
Castro::FluxRegCrseInit 10 5.861e-06 8.315e-06 9.847e-06 0.00%
Amr::InitializeInit() 1 1.876e-06 4.377e-06 8.23e-06 0.00%
DistributionMapping::SFCProcessorMapDoIt() 1 3.512e-06 6.332e-06 8.09e-06 0.00%
Castro::retry_advance_ctu() 10 4.496e-06 5.936e-06 7.026e-06 0.00%
Castro::computeInitialDt() 2 3.01e-06 3.61e-06 4.868e-06 0.00%
Castro::post_regrid() 1 1.811e-06 2.807e-06 4.694e-06 0.00%
Castro::FluxRegFineAdd() 10 2.093e-06 2.375e-06 3.038e-06 0.00%
Amr::init() 1 2.003e-06 2.31e-06 2.878e-06 0.00%
Amr::initialInit() 1 1.171e-06 1.537e-06 2.575e-06 0.00%
DistributionMapping::Distribute() 1 9.04e-07 1.283e-06 1.982e-06 0.00%
-------------------------------------------------------------------------------------------
-------------------------------------------------------------------------------------------
Name NCalls Incl. Min Incl. Avg Incl. Max Max %
-------------------------------------------------------------------------------------------
main() 1 3.655 3.656 3.657 100.00%
Amr::coarseTimeStep() 10 3.46 3.46 3.46 94.63%
Amr::timeStep() 10 3.449 3.451 3.451 94.38%
Castro::advance() 10 3.434 3.434 3.435 93.93%
Castro::subcycle_advance_ctu() 10 3.359 3.361 3.363 91.98%
Castro::do_advance_ctu() 10 3.359 3.361 3.363 91.97%
Castro::construct_ctu_hydro_source() 10 2.171 2.413 2.51 68.64%
Gravity::make_radial_gravity() 21 0.3391 0.3542 0.373 10.20%
Gravity::get_new_grav_vector() 11 0.2307 0.2326 0.2338 6.39%
Castro::construct_old_gravity() 10 0.1997 0.2133 0.2267 6.20%
Gravity::get_old_grav_vector() 10 0.1988 0.2124 0.2256 6.17%
Castro::construct_new_gravity() 10 0.2061 0.2075 0.2087 5.71%
FillPatchIterator::Initialize 41 0.1893 0.1952 0.2033 5.56%
Castro::initialize_do_advance() 10 0.163 0.1784 0.1889 5.16%
Amr::init() 1 0.1786 0.1788 0.1789 4.89%
FillPatchSingleLevel 41 0.1371 0.1481 0.1733 4.74%
Amr::initialInit() 1 0.1629 0.1631 0.1633 4.47%
Castro::expand_state() 10 0.1204 0.13 0.139 3.80%
FabArray::ParallelCopy() 41 0.0953 0.1061 0.1355 3.71%
Amr::InitializeInit() 1 0.05989 0.09847 0.1349 3.69%
Amr::defBaseLevel() 1 0.05989 0.09847 0.1349 3.69%
Castro::clean_state() 62 0.1138 0.1176 0.1211 3.31%
Castro::initData() 1 0.04269 0.081 0.1185 3.24%
Castro::estTimeStep() 21 0.03154 0.06804 0.1076 2.94%
FabArray::ParallelCopy_finish() 41 0.04626 0.06068 0.1044 2.85%
Amr::FinalizeInit() 1 0.02825 0.06467 0.1032 2.82%
Castro::computeInitialDt() 2 0.001715 0.03804 0.07656 2.09%
Castro::initialize_advance() 10 0.07117 0.07361 0.07506 2.05%
FabArray::setVal() 143 0.06969 0.07142 0.07305 2.00%
Castro::computeTemp() 63 0.06667 0.06949 0.07197 1.97%
Castro::do_new_sources() 10 0.06493 0.06613 0.06951 1.90%
Castro::reset_internal_energy(MultiFab) 63 0.04894 0.05035 0.05205 1.42%
Castro::reset_internal_energy(Fab) 1008 0.04862 0.05004 0.05175 1.42%
Castro::do_old_sources() 10 0.03748 0.04687 0.05102 1.40%
FabArray::ParallelCopy_nowait() 41 0.03108 0.04528 0.05063 1.38%
StateDataPhysBCFunct::() 41 0.03755 0.04194 0.04658 1.27%
StateData::FillBoundary(geom) 41 0.03744 0.04181 0.04643 1.27%
Castro::normalize_species() 62 0.04077 0.04204 0.04347 1.19%
Castro::construct_new_source() 50 0.02832 0.03057 0.03174 0.87%
Gravity::interpolate_monopole_grav() 21 0.02702 0.02766 0.02803 0.77%
Castro::construct_new_gravity_source() 10 0.02296 0.02391 0.02642 0.72%
Amr::writePlotFile() 2 0.02591 0.02601 0.02618 0.72%
Castro::post_init() 1 0.02558 0.02588 0.02609 0.71%
Castro::post_timestep() 10 0.01509 0.01589 0.01664 0.45%
Castro::apply_source_to_state() 20 0.01239 0.01508 0.01636 0.45%
MultiFab::Saxpy() 20 0.01235 0.01503 0.0163 0.45%
VisMF::Write(FabArray) 2 0.01216 0.01291 0.01553 0.42%
Castro::check_for_nan() 20 0.01072 0.01157 0.01295 0.35%
MultiFab::contains_nan() 20 0.0107 0.01154 0.01293 0.35%
FabArray::setDomainBndry() 41 0.004999 0.0105 0.01246 0.34%
Castro::construct_old_source() 50 0.005838 0.01066 0.01233 0.34%
Castro::construct_old_gravity_source() 10 0.005798 0.01058 0.01224 0.33%
Castro::Castro() 1 0.01052 0.01091 0.01165 0.32%
AmrLevel::AmrLevel(dm) 1 0.005571 0.006349 0.008231 0.23%
StateData::define() 4 0.005557 0.006332 0.008208 0.22%
Castro::initMFs() 1 0.006621 0.007128 0.00812 0.22%
Castro::enforce_min_density() 62 0.006224 0.006762 0.007209 0.20%
Castro::computeNewDt() 9 0.007163 0.007183 0.007191 0.20%
Castro::swap_state_time_levels() 10 0.003454 0.00463 0.004827 0.13%
Castro::buildMetrics() 1 0.001676 0.001938 0.00255 0.07%
Castro::post_regrid() 1 0.001579 0.001665 0.001809 0.05%
Castro::finalize_do_advance() 10 0.0006587 0.001412 0.001659 0.05%
Amr::InitAmr() 1 0.0002824 0.0003586 0.0005033 0.01%
DistributionMapping::SFCProcessorMapDoIt() 1 1.593e-05 0.000182 0.0002696 0.01%
DistributionMapping::LeastUsedCPUs() 1 6.759e-06 0.0001744 0.0002607 0.01%
Castro::enforce_consistent_e() 1 8.048e-05 8.973e-05 0.0001094 0.00%
FabArrayBase::getCPC() 41 7.288e-05 8.733e-05 0.000105 0.00%
Amr::writeSmallPlotFile() 1 2.549e-05 6.05e-05 7.361e-05 0.00%
Castro::finalize_advance() 10 5.908e-05 6.5e-05 6.918e-05 0.00%
FabArrayBase::CPC::define() 2 2.388e-05 2.772e-05 3.843e-05 0.00%
Castro::enforce_speed_limit() 62 2.493e-05 2.793e-05 3.31e-05 0.00%
Amr::initSubcycle() 1 8.22e-06 1.032e-05 1.545e-05 0.00%
Gravity::swapTimeLevels() 10 6.741e-06 1.179e-05 1.497e-05 0.00%
Castro::create_source_corrector() 10 7.167e-06 1.105e-05 1.383e-05 0.00%
Gravity::set_mass_offset() 10 6.492e-06 9.251e-06 1.142e-05 0.00%
Castro::FluxRegCrseInit 10 5.861e-06 8.315e-06 9.847e-06 0.00%
Castro::retry_advance_ctu() 10 4.496e-06 5.936e-06 7.026e-06 0.00%
Castro::FluxRegFineAdd() 10 2.093e-06 2.375e-06 3.038e-06 0.00%
DistributionMapping::Distribute() 1 9.04e-07 1.283e-06 1.982e-06 0.00%
-------------------------------------------------------------------------------------------
Unused ParmParse Variables:
[TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2]
[TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2]
AMReX (22.08-1-g94693291667b) finalized