MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.08-5-g6ebf8ffc2689) initialized Starting run at 05:39:22 UTC on 2022-08-05. Successfully read inputs file ... Castro git describe: 22.08-1-g4c16aad67 AMReX git describe: 22.08-5-g6ebf8ffc2 Microphysics git describe: 22.08-1-gffefdd62 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.055611991 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.373982695 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.345158066 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.34171798 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.356037261 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.359469573 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.348778406 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.342911412 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.342071445 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.348387137 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.338693183 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010374061 seconds Ending run at 05:39:26 UTC on 2022-08-05. Run time = 3.738504869 Run time without initialization = 3.515490552 Average number of zones advanced per microsecond: 0.746 Average number of zones advanced per microsecond per rank: 0.093 TinyProfiler total time across processes [min...avg...max]: 3.736 ... 3.738 ... 3.739 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1811 2.4321 2.5437 68.04% Castro::do_advance_ctu() 10 0.05636 0.1695 0.4227 11.31% Gravity::make_radial_gravity() 21 0.3454 0.3576 0.3822 10.22% FabArray::ParallelCopy_finish() 41 0.03878 0.05989 0.122 3.26% Castro::initData() 1 0.03824 0.07879 0.1148 3.07% Castro::estTimeStep() 21 0.02668 0.06456 0.1036 2.77% FabArray::setVal() 143 0.05611 0.06803 0.07158 1.91% Amr::writePlotFile() 2 0.04991 0.05258 0.05358 1.43% Castro::reset_internal_energy(Fab) 1008 0.04795 0.05001 0.05251 1.40% FabArray::ParallelCopy_nowait() 41 0.02795 0.04475 0.0505 1.35% StateData::FillBoundary(geom) 41 0.03521 0.0417 0.04513 1.21% Castro::normalize_species() 62 0.04038 0.04143 0.04247 1.14% FillPatchIterator::Initialize 41 0.02451 0.03644 0.04055 1.08% Gravity::interpolate_monopole_grav() 21 0.02676 0.02754 0.02781 0.74% Castro::construct_new_gravity_source() 10 0.02024 0.02277 0.0239 0.64% Castro::expand_state() 10 0.009825 0.01864 0.02197 0.59% Castro::computeTemp() 63 0.01823 0.01905 0.02015 0.54% Castro::initialize_do_advance() 10 0.01044 0.01761 0.01998 0.53% VisMF::Write(FabArray) 2 0.01286 0.01357 0.01631 0.44% MultiFab::Saxpy() 20 0.008731 0.01422 0.01617 0.43% Gravity::get_new_grav_vector() 11 0.007603 0.01158 0.01278 0.34% FabArray::setDomainBndry() 41 0.004935 0.01052 0.01254 0.34% MultiFab::contains_nan() 20 0.009701 0.01124 0.01207 0.32% Castro::construct_old_gravity_source() 10 0.004919 0.01005 0.01165 0.31% Castro::initialize_advance() 10 0.006733 0.009972 0.01148 0.31% Gravity::get_old_grav_vector() 10 0.005525 0.009334 0.01088 0.29% Castro::initMFs() 1 0.006851 0.007337 0.00837 0.22% main() 1 0.004551 0.006564 0.007169 0.19% Castro::enforce_min_density() 62 0.005983 0.006684 0.007164 0.19% Castro::construct_new_source() 50 0.004846 0.006559 0.007154 0.19% StateData::define() 4 0.005623 0.00591 0.006428 0.17% Castro::swap_state_time_levels() 10 0.003317 0.004452 0.004698 0.13% Amr::coarseTimeStep() 10 0.0008327 0.001459 0.002633 0.07% Castro::buildMetrics() 1 0.001598 0.0017 0.001897 0.05% Castro::finalize_do_advance() 10 0.0006625 0.001462 0.001714 0.05% Amr::timeStep() 10 0.0001755 0.0002444 0.0005606 0.01% Amr::InitAmr() 1 0.0002446 0.0002787 0.0003908 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002845 0.0002982 0.0003114 0.01% Castro::clean_state() 62 0.0001412 0.0001591 0.0001763 0.00% DistributionMapping::LeastUsedCPUs() 1 7.791e-06 0.0001282 0.000154 0.00% StateDataPhysBCFunct::() 41 0.0001 0.0001267 0.0001457 0.00% Castro::enforce_consistent_e() 1 7.732e-05 8.811e-05 9.781e-05 0.00% Amr::writeSmallPlotFile() 1 6.245e-05 7.779e-05 9.443e-05 0.00% FabArray::ParallelCopy() 41 6.123e-05 7.791e-05 8.953e-05 0.00% Castro::do_new_sources() 10 4.143e-05 7.017e-05 8.85e-05 0.00% Castro::construct_old_source() 50 2.936e-05 7.126e-05 8.602e-05 0.00% Castro::do_old_sources() 10 3.908e-05 6.592e-05 8.302e-05 0.00% Castro::Castro() 1 5.569e-05 6.898e-05 8.084e-05 0.00% Amr::FinalizeInit() 1 3.472e-06 1.41e-05 8.063e-05 0.00% FillPatchSingleLevel 41 5.526e-05 6.391e-05 7.043e-05 0.00% FabArrayBase::getCPC() 41 4.698e-05 5.504e-05 6.942e-05 0.00% Castro::finalize_advance() 10 5.462e-05 6.033e-05 6.386e-05 0.00% Castro::apply_source_to_state() 20 3.519e-05 4.923e-05 6.137e-05 0.00% Castro::construct_old_gravity() 10 3.403e-05 4.868e-05 6.093e-05 0.00% Amr::defBaseLevel() 1 3.669e-05 4.689e-05 6.009e-05 0.00% Castro::subcycle_advance_ctu() 10 3.08e-05 4.56e-05 5.354e-05 0.00% Castro::construct_new_gravity() 10 3.628e-05 4.36e-05 4.872e-05 0.00% Castro::advance() 10 3.282e-05 4.181e-05 4.769e-05 0.00% Castro::enforce_speed_limit() 62 2.191e-05 2.773e-05 3.342e-05 0.00% FabArrayBase::CPC::define() 2 2.202e-05 2.627e-05 3.015e-05 0.00% AmrLevel::AmrLevel(dm) 1 8.189e-06 1.403e-05 2.79e-05 0.00% Castro::check_for_nan() 20 1.757e-05 2.267e-05 2.636e-05 0.00% Castro::post_timestep() 10 1.41e-05 1.551e-05 1.707e-05 0.00% Castro::FluxRegCrseInit 10 5.778e-06 9.705e-06 1.602e-05 0.00% Gravity::swapTimeLevels() 10 7.434e-06 1.187e-05 1.544e-05 0.00% Castro::create_source_corrector() 10 6.075e-06 1.056e-05 1.305e-05 0.00% Castro::computeNewDt() 9 7.245e-06 9.162e-06 1.058e-05 0.00% Gravity::set_mass_offset() 10 5.706e-06 8.668e-06 9.921e-06 0.00% Amr::initSubcycle() 1 8.124e-06 9.022e-06 9.633e-06 0.00% Castro::retry_advance_ctu() 10 3.94e-06 6.101e-06 7.283e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.448e-06 5.079e-06 6.963e-06 0.00% Amr::InitializeInit() 1 2.038e-06 4.013e-06 6.834e-06 0.00% Castro::computeInitialDt() 2 3.334e-06 4.303e-06 5.279e-06 0.00% Castro::post_regrid() 1 1.826e-06 2.655e-06 4.754e-06 0.00% Castro::post_init() 1 2.856e-06 3.56e-06 4.247e-06 0.00% Castro::FluxRegFineAdd() 10 1.773e-06 2.362e-06 3.314e-06 0.00% Amr::init() 1 1.614e-06 1.968e-06 2.347e-06 0.00% Amr::initialInit() 1 1.416e-06 1.704e-06 1.907e-06 0.00% DistributionMapping::Distribute() 1 9.37e-07 1.112e-06 1.298e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.736 3.738 3.739 100.00% Amr::coarseTimeStep() 10 3.498 3.498 3.498 93.56% Amr::timeStep() 10 3.487 3.489 3.489 93.33% Castro::advance() 10 3.472 3.472 3.473 92.89% Castro::subcycle_advance_ctu() 10 3.399 3.402 3.412 91.26% Castro::do_advance_ctu() 10 3.399 3.402 3.412 91.26% Castro::construct_ctu_hydro_source() 10 2.181 2.432 2.544 68.04% Gravity::make_radial_gravity() 21 0.3454 0.3576 0.3822 10.22% Gravity::get_new_grav_vector() 11 0.2318 0.2351 0.2369 6.34% Castro::construct_old_gravity() 10 0.203 0.2132 0.2321 6.21% Gravity::get_old_grav_vector() 10 0.2021 0.2125 0.2316 6.19% Amr::init() 1 0.2225 0.2226 0.2226 5.96% FillPatchIterator::Initialize 41 0.1826 0.1937 0.2175 5.82% Castro::construct_new_gravity() 10 0.206 0.2085 0.21 5.62% FillPatchSingleLevel 41 0.1302 0.1467 0.1881 5.03% Castro::initialize_do_advance() 10 0.1673 0.1762 0.1818 4.86% Amr::initialInit() 1 0.1666 0.1669 0.1673 4.47% FabArray::ParallelCopy() 41 0.08721 0.1048 0.1501 4.02% Amr::InitializeInit() 1 0.05896 0.1002 0.137 3.66% Amr::defBaseLevel() 1 0.05896 0.1002 0.137 3.66% Castro::expand_state() 10 0.1219 0.1282 0.1322 3.54% FabArray::ParallelCopy_finish() 41 0.03878 0.05989 0.122 3.26% Castro::clean_state() 62 0.1123 0.1167 0.1203 3.22% Castro::initData() 1 0.04224 0.08278 0.119 3.18% Amr::FinalizeInit() 1 0.0301 0.0667 0.1081 2.89% Castro::estTimeStep() 21 0.02668 0.06456 0.1036 2.77% Castro::computeInitialDt() 2 0.001749 0.03854 0.07982 2.14% Castro::initialize_advance() 10 0.05981 0.07037 0.07371 1.97% Castro::computeTemp() 63 0.06647 0.06935 0.07297 1.95% FabArray::setVal() 143 0.05611 0.06803 0.07158 1.91% Amr::writePlotFile() 2 0.0658 0.06615 0.06644 1.78% Castro::do_new_sources() 10 0.05457 0.06303 0.06462 1.73% Castro::reset_internal_energy(MultiFab) 63 0.04823 0.0503 0.05282 1.41% Castro::reset_internal_energy(Fab) 1008 0.04795 0.05001 0.05251 1.40% FabArray::ParallelCopy_nowait() 41 0.02803 0.04483 0.05058 1.35% Castro::do_old_sources() 10 0.03272 0.0451 0.04878 1.30% StateDataPhysBCFunct::() 41 0.03531 0.04183 0.04526 1.21% StateData::FillBoundary(geom) 41 0.03521 0.0417 0.04513 1.21% Castro::normalize_species() 62 0.04038 0.04143 0.04247 1.14% Castro::construct_new_source() 50 0.02509 0.02932 0.03102 0.83% Gravity::interpolate_monopole_grav() 21 0.02676 0.02754 0.02781 0.74% Castro::post_init() 1 0.02717 0.02742 0.02774 0.74% Castro::construct_new_gravity_source() 10 0.02024 0.02277 0.0239 0.64% Castro::post_timestep() 10 0.01537 0.01587 0.01631 0.44% VisMF::Write(FabArray) 2 0.01286 0.01357 0.01631 0.44% Castro::apply_source_to_state() 20 0.008767 0.01427 0.01623 0.43% MultiFab::Saxpy() 20 0.008731 0.01422 0.01617 0.43% FabArray::setDomainBndry() 41 0.004935 0.01052 0.01254 0.34% Castro::Castro() 1 0.01078 0.01132 0.01223 0.33% Castro::check_for_nan() 20 0.009718 0.01126 0.0121 0.32% MultiFab::contains_nan() 20 0.009701 0.01124 0.01207 0.32% Castro::construct_old_source() 50 0.004948 0.01012 0.01173 0.31% Castro::construct_old_gravity_source() 10 0.004919 0.01005 0.01165 0.31% Castro::initMFs() 1 0.006851 0.007337 0.00837 0.22% Castro::enforce_min_density() 62 0.005983 0.006684 0.007164 0.19% Castro::computeNewDt() 9 0.007037 0.00705 0.007059 0.19% AmrLevel::AmrLevel(dm) 1 0.005632 0.005924 0.006441 0.17% StateData::define() 4 0.005623 0.00591 0.006428 0.17% Castro::swap_state_time_levels() 10 0.003317 0.004452 0.004698 0.13% Castro::buildMetrics() 1 0.00172 0.001833 0.00205 0.05% Castro::post_regrid() 1 0.001625 0.001666 0.001719 0.05% Castro::finalize_do_advance() 10 0.0006625 0.001462 0.001714 0.05% Amr::InitAmr() 1 0.0002541 0.0002877 0.0003989 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.218e-05 0.0001344 0.0001617 0.00% DistributionMapping::LeastUsedCPUs() 1 7.791e-06 0.0001282 0.000154 0.00% FabArrayBase::getCPC() 41 7.514e-05 8.131e-05 9.794e-05 0.00% Castro::enforce_consistent_e() 1 7.732e-05 8.811e-05 9.781e-05 0.00% Amr::writeSmallPlotFile() 1 6.245e-05 7.779e-05 9.443e-05 0.00% Castro::finalize_advance() 10 6.335e-05 7.24e-05 7.749e-05 0.00% Castro::enforce_speed_limit() 62 2.191e-05 2.773e-05 3.342e-05 0.00% FabArrayBase::CPC::define() 2 2.202e-05 2.627e-05 3.015e-05 0.00% Castro::FluxRegCrseInit 10 5.778e-06 9.705e-06 1.602e-05 0.00% Gravity::swapTimeLevels() 10 7.434e-06 1.187e-05 1.544e-05 0.00% Castro::create_source_corrector() 10 6.075e-06 1.056e-05 1.305e-05 0.00% Gravity::set_mass_offset() 10 5.706e-06 8.668e-06 9.921e-06 0.00% Amr::initSubcycle() 1 8.124e-06 9.022e-06 9.633e-06 0.00% Castro::retry_advance_ctu() 10 3.94e-06 6.101e-06 7.283e-06 0.00% Castro::FluxRegFineAdd() 10 1.773e-06 2.362e-06 3.314e-06 0.00% DistributionMapping::Distribute() 1 9.37e-07 1.112e-06 1.298e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.08-5-g6ebf8ffc2689) finalized