MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.08-17-g8294c3afbcbb) initialized Starting run at 05:39:48 UTC on 2022-08-23. Successfully read inputs file ... Castro git describe: 22.08-11-ga978fcf88 AMReX git describe: 22.08-17-g8294c3afb Microphysics git describe: 22.08-4-gb9a0f9aa reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016250098 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.372465597 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.348474149 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.34661325 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.34605875 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.356927847 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.358088247 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.342681604 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.342922859 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.343576606 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.344501284 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010551313 seconds Ending run at 05:39:52 UTC on 2022-08-23. Run time = 3.712334003 Run time without initialization = 3.520816991 Average number of zones advanced per microsecond: 0.745 Average number of zones advanced per microsecond per rank: 0.093 TinyProfiler total time across processes [min...avg...max]: 3.712 ... 3.712 ... 3.712 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.0912 2.4199 2.5579 68.90% Castro::do_advance_ctu() 10 0.03118 0.1743 0.5069 13.66% Gravity::make_radial_gravity() 21 0.3433 0.3628 0.3951 10.64% FabArray::ParallelCopy_finish() 41 0.04347 0.06353 0.1263 3.40% Castro::initData() 1 0.03919 0.08152 0.1212 3.27% Castro::estTimeStep() 21 0.02732 0.0703 0.1134 3.05% FabArray::setVal() 143 0.06033 0.06833 0.07016 1.89% StateData::FillBoundary(geom) 41 0.03355 0.04313 0.05401 1.45% Castro::reset_internal_energy(Fab) 1008 0.04639 0.05031 0.05319 1.43% FabArray::ParallelCopy_nowait() 41 0.02711 0.04519 0.05094 1.37% Castro::normalize_species() 62 0.03993 0.0415 0.04259 1.15% FillPatchIterator::Initialize 41 0.02338 0.03587 0.04041 1.09% Gravity::interpolate_monopole_grav() 21 0.02535 0.02725 0.02837 0.76% Castro::construct_new_gravity_source() 10 0.01989 0.0231 0.02398 0.65% Castro::expand_state() 10 0.00964 0.01876 0.02276 0.61% Castro::computeTemp() 63 0.01728 0.01928 0.0212 0.57% Castro::initialize_do_advance() 10 0.009433 0.01747 0.01958 0.53% VisMF::Write(FabArray) 2 0.01315 0.01399 0.01834 0.49% MultiFab::Saxpy() 20 0.008806 0.0145 0.01652 0.45% Amr::writePlotFile() 2 0.008687 0.01313 0.01417 0.38% MultiFab::contains_nan() 20 0.01004 0.01153 0.01338 0.36% Gravity::get_new_grav_vector() 11 0.007407 0.01152 0.01281 0.35% FabArray::setDomainBndry() 41 0.004828 0.01034 0.01248 0.34% Castro::construct_old_gravity_source() 10 0.005 0.01006 0.01178 0.32% Gravity::get_old_grav_vector() 10 0.005249 0.009432 0.01112 0.30% Castro::initialize_advance() 10 0.006766 0.009991 0.01085 0.29% Castro::initMFs() 1 0.006645 0.007163 0.007828 0.21% StateData::define() 4 0.005469 0.006232 0.007449 0.20% Castro::construct_new_source() 50 0.004832 0.006561 0.007251 0.20% main() 1 0.006655 0.006937 0.007201 0.19% Castro::enforce_min_density() 62 0.005967 0.006728 0.00713 0.19% Castro::swap_state_time_levels() 10 0.003295 0.004387 0.005225 0.14% Amr::coarseTimeStep() 10 0.001189 0.001429 0.002013 0.05% Castro::buildMetrics() 1 0.001546 0.001687 0.001821 0.05% Castro::finalize_do_advance() 10 0.0006517 0.001413 0.001589 0.04% Amr::InitAmr() 1 0.0002789 0.0003626 0.0004948 0.01% Amr::timeStep() 10 0.0001704 0.0002225 0.0004659 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002816 0.0003021 0.0003329 0.01% DistributionMapping::LeastUsedCPUs() 1 6.676e-06 0.000163 0.0002578 0.01% Castro::clean_state() 62 0.0001563 0.0001716 0.0001821 0.00% StateDataPhysBCFunct::() 41 0.0001009 0.0001263 0.0001465 0.00% Castro::construct_old_source() 50 3.097e-05 7.24e-05 9.795e-05 0.00% Castro::enforce_consistent_e() 1 7.425e-05 8.542e-05 9.722e-05 0.00% FabArray::ParallelCopy() 41 5.989e-05 8.204e-05 9.25e-05 0.00% Castro::do_new_sources() 10 3.874e-05 7.203e-05 8.662e-05 0.00% Amr::FinalizeInit() 1 4.159e-06 1.45e-05 8.31e-05 0.00% Castro::do_old_sources() 10 3.451e-05 6.497e-05 8.093e-05 0.00% FillPatchSingleLevel 41 5.453e-05 6.566e-05 7.98e-05 0.00% Amr::writeSmallPlotFile() 1 2.36e-05 5.894e-05 7.341e-05 0.00% FabArrayBase::getCPC() 41 5.028e-05 5.94e-05 6.837e-05 0.00% Castro::Castro() 1 5.453e-05 6.097e-05 6.657e-05 0.00% Castro::construct_old_gravity() 10 3.265e-05 5.313e-05 6.541e-05 0.00% Amr::defBaseLevel() 1 4.856e-05 5.601e-05 6.327e-05 0.00% Castro::apply_source_to_state() 20 3.459e-05 4.916e-05 5.775e-05 0.00% Castro::subcycle_advance_ctu() 10 3.025e-05 4.683e-05 5.686e-05 0.00% Castro::finalize_advance() 10 4.814e-05 5.219e-05 5.574e-05 0.00% Castro::advance() 10 2.765e-05 4.48e-05 5.484e-05 0.00% Castro::construct_new_gravity() 10 4.309e-05 4.772e-05 5.155e-05 0.00% Castro::enforce_speed_limit() 62 2.171e-05 2.79e-05 3.045e-05 0.00% FabArrayBase::CPC::define() 2 2.27e-05 2.56e-05 3.006e-05 0.00% Castro::check_for_nan() 20 1.77e-05 2.358e-05 2.854e-05 0.00% Castro::post_timestep() 10 1.471e-05 1.936e-05 2.749e-05 0.00% Gravity::swapTimeLevels() 10 5.499e-06 1.308e-05 1.885e-05 0.00% AmrLevel::AmrLevel(dm) 1 6.668e-06 1.062e-05 1.745e-05 0.00% Castro::computeNewDt() 9 8e-06 1.037e-05 1.745e-05 0.00% Amr::initSubcycle() 1 8.405e-06 1.141e-05 1.732e-05 0.00% Amr::InitializeInit() 1 1.985e-06 5.901e-06 1.482e-05 0.00% Castro::post_init() 1 2.79e-06 5.673e-06 1.396e-05 0.00% Castro::create_source_corrector() 10 6.434e-06 1.053e-05 1.274e-05 0.00% Gravity::set_mass_offset() 10 7.22e-06 9.42e-06 1.172e-05 0.00% Castro::FluxRegCrseInit 10 5.767e-06 8.546e-06 1.021e-05 0.00% DistributionMapping::Distribute() 1 9.72e-07 3.812e-06 8.929e-06 0.00% Castro::retry_advance_ctu() 10 4.4e-06 6.046e-06 7.549e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.836e-06 4.718e-06 6.658e-06 0.00% Castro::computeInitialDt() 2 3.361e-06 4.063e-06 4.96e-06 0.00% Castro::post_regrid() 1 1.677e-06 2.699e-06 4.305e-06 0.00% Castro::FluxRegFineAdd() 10 1.975e-06 2.525e-06 3.195e-06 0.00% Amr::init() 1 1.73e-06 2.072e-06 2.512e-06 0.00% Amr::initialInit() 1 1.417e-06 1.703e-06 1.993e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.712 3.712 3.712 100.00% Amr::coarseTimeStep() 10 3.503 3.503 3.503 94.36% Amr::timeStep() 10 3.493 3.493 3.494 94.11% Castro::advance() 10 3.476 3.477 3.477 93.67% Castro::subcycle_advance_ctu() 10 3.403 3.406 3.413 91.93% Castro::do_advance_ctu() 10 3.402 3.406 3.413 91.93% Castro::construct_ctu_hydro_source() 10 2.091 2.42 2.558 68.90% Gravity::make_radial_gravity() 21 0.3433 0.3628 0.3951 10.64% Castro::construct_old_gravity() 10 0.2025 0.2178 0.242 6.52% Gravity::get_old_grav_vector() 10 0.2016 0.217 0.2415 6.51% Gravity::get_new_grav_vector() 11 0.2306 0.2355 0.237 6.38% FillPatchIterator::Initialize 41 0.1921 0.1984 0.2157 5.81% Castro::construct_new_gravity() 10 0.2031 0.2075 0.209 5.63% Amr::init() 1 0.1908 0.191 0.1911 5.15% Castro::initialize_do_advance() 10 0.1628 0.1797 0.1908 5.14% FillPatchSingleLevel 41 0.1394 0.1522 0.1874 5.05% Amr::initialInit() 1 0.1741 0.1745 0.1748 4.71% FabArray::ParallelCopy() 41 0.09456 0.1089 0.1536 4.14% Amr::InitializeInit() 1 0.0587 0.1027 0.1434 3.86% Amr::defBaseLevel() 1 0.05869 0.1027 0.1434 3.86% Castro::expand_state() 10 0.1188 0.132 0.1392 3.75% FabArray::ParallelCopy_finish() 41 0.04347 0.06353 0.1263 3.40% Castro::initData() 1 0.04285 0.08535 0.1249 3.36% Castro::clean_state() 62 0.1092 0.1174 0.123 3.31% Amr::FinalizeInit() 1 0.03103 0.07177 0.1161 3.13% Castro::estTimeStep() 21 0.02732 0.0703 0.1134 3.05% Castro::computeInitialDt() 2 0.001692 0.04232 0.08645 2.33% Castro::computeTemp() 63 0.06398 0.0699 0.07472 2.01% Castro::initialize_advance() 10 0.06339 0.07138 0.07447 2.01% FabArray::setVal() 143 0.06033 0.06833 0.07016 1.89% Castro::do_new_sources() 10 0.05396 0.06354 0.06575 1.77% StateDataPhysBCFunct::() 41 0.03366 0.04325 0.05415 1.46% StateData::FillBoundary(geom) 41 0.03355 0.04313 0.05401 1.45% Castro::reset_internal_energy(MultiFab) 63 0.0467 0.05061 0.05353 1.44% Castro::reset_internal_energy(Fab) 1008 0.04639 0.05031 0.05319 1.43% FabArray::ParallelCopy_nowait() 41 0.0272 0.04527 0.05102 1.37% Castro::do_old_sources() 10 0.03238 0.04528 0.04928 1.33% Castro::normalize_species() 62 0.03993 0.0415 0.04259 1.15% Castro::construct_new_source() 50 0.02473 0.02966 0.03123 0.84% Castro::post_init() 1 0.02856 0.02881 0.02904 0.78% Gravity::interpolate_monopole_grav() 21 0.02535 0.02725 0.02837 0.76% Amr::writePlotFile() 2 0.02689 0.02712 0.02739 0.74% Castro::construct_new_gravity_source() 10 0.01989 0.0231 0.02398 0.65% VisMF::Write(FabArray) 2 0.01315 0.01399 0.01834 0.49% Castro::apply_source_to_state() 20 0.008841 0.01455 0.01658 0.45% MultiFab::Saxpy() 20 0.008806 0.0145 0.01652 0.45% Castro::post_timestep() 10 0.01594 0.0161 0.01631 0.44% Castro::check_for_nan() 20 0.01006 0.01155 0.01341 0.36% MultiFab::contains_nan() 20 0.01004 0.01153 0.01338 0.36% FabArray::setDomainBndry() 41 0.004828 0.01034 0.01248 0.34% Castro::Castro() 1 0.009971 0.0109 0.0119 0.32% Castro::construct_old_source() 50 0.005031 0.01013 0.01188 0.32% Castro::construct_old_gravity_source() 10 0.005 0.01006 0.01178 0.32% Castro::initMFs() 1 0.006645 0.007163 0.007828 0.21% AmrLevel::AmrLevel(dm) 1 0.005477 0.006243 0.007466 0.20% StateData::define() 4 0.005469 0.006232 0.007449 0.20% Castro::computeNewDt() 9 0.007332 0.007342 0.007357 0.20% Castro::enforce_min_density() 62 0.005967 0.006728 0.00713 0.19% Castro::swap_state_time_levels() 10 0.003295 0.004387 0.005225 0.14% Castro::buildMetrics() 1 0.001662 0.001818 0.001967 0.05% Castro::post_regrid() 1 0.001511 0.001633 0.001959 0.05% Castro::finalize_do_advance() 10 0.0006517 0.001413 0.001589 0.04% Amr::InitAmr() 1 0.0002875 0.000374 0.0005093 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.152e-05 0.0001716 0.0002721 0.01% DistributionMapping::LeastUsedCPUs() 1 6.676e-06 0.000163 0.0002578 0.01% Castro::enforce_consistent_e() 1 7.425e-05 8.542e-05 9.722e-05 0.00% FabArrayBase::getCPC() 41 7.887e-05 8.5e-05 9.26e-05 0.00% Amr::writeSmallPlotFile() 1 2.36e-05 5.894e-05 7.341e-05 0.00% Castro::finalize_advance() 10 5.882e-05 6.327e-05 6.833e-05 0.00% Castro::enforce_speed_limit() 62 2.171e-05 2.79e-05 3.045e-05 0.00% FabArrayBase::CPC::define() 2 2.27e-05 2.56e-05 3.006e-05 0.00% Gravity::swapTimeLevels() 10 5.499e-06 1.308e-05 1.885e-05 0.00% Amr::initSubcycle() 1 8.405e-06 1.141e-05 1.732e-05 0.00% Castro::create_source_corrector() 10 6.434e-06 1.053e-05 1.274e-05 0.00% Gravity::set_mass_offset() 10 7.22e-06 9.42e-06 1.172e-05 0.00% Castro::FluxRegCrseInit 10 5.767e-06 8.546e-06 1.021e-05 0.00% DistributionMapping::Distribute() 1 9.72e-07 3.812e-06 8.929e-06 0.00% Castro::retry_advance_ctu() 10 4.4e-06 6.046e-06 7.549e-06 0.00% Castro::FluxRegFineAdd() 10 1.975e-06 2.525e-06 3.195e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.08-17-g8294c3afbcbb) finalized