MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.08-17-g8294c3afbcbb) initialized Starting run at 05:39:51 UTC on 2022-08-24. Successfully read inputs file ... Castro git describe: 22.08-11-ga978fcf88 AMReX git describe: 22.08-17-g8294c3afb Microphysics git describe: 22.08-4-gb9a0f9aa reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016781784 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.358618283 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.344122329 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.346176864 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.344985561 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.356340415 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.355473683 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.340121927 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.33930908 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.333248769 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.333026138 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.0530993 seconds Ending run at 05:39:55 UTC on 2022-08-24. Run time = 3.696133667 Run time without initialization = 3.512717332 Average number of zones advanced per microsecond: 0.746 Average number of zones advanced per microsecond per rank: 0.093 TinyProfiler total time across processes [min...avg...max]: 3.693 ... 3.695 ... 3.696 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1598 2.4158 2.5109 67.93% Castro::do_advance_ctu() 10 0.03047 0.1277 0.387 10.47% Gravity::make_radial_gravity() 21 0.3411 0.3551 0.3762 10.18% FabArray::ParallelCopy_finish() 41 0.04539 0.06408 0.1166 3.15% Castro::initData() 1 0.03951 0.07865 0.1157 3.13% Castro::estTimeStep() 21 0.03113 0.06991 0.1078 2.92% FabArray::setVal() 143 0.06687 0.07201 0.07344 1.99% Amr::writePlotFile() 2 0.05242 0.05589 0.05698 1.54% Castro::reset_internal_energy(Fab) 1008 0.04706 0.04995 0.05166 1.40% FabArray::ParallelCopy_nowait() 41 0.02872 0.04461 0.04984 1.35% StateData::FillBoundary(geom) 41 0.03754 0.04268 0.04639 1.26% Castro::normalize_species() 62 0.04038 0.04148 0.04267 1.15% FillPatchIterator::Initialize 41 0.02477 0.03607 0.04039 1.09% Gravity::interpolate_monopole_grav() 21 0.02637 0.02745 0.02801 0.76% Castro::construct_new_gravity_source() 10 0.02002 0.02331 0.02543 0.69% Castro::expand_state() 10 0.009859 0.01777 0.02091 0.57% Castro::initialize_do_advance() 10 0.01027 0.01752 0.0203 0.55% Castro::computeTemp() 63 0.01754 0.01908 0.02026 0.55% VisMF::Write(FabArray) 2 0.01343 0.01424 0.01768 0.48% MultiFab::Saxpy() 20 0.008667 0.01438 0.01618 0.44% MultiFab::contains_nan() 20 0.00987 0.01156 0.01288 0.35% Gravity::get_new_grav_vector() 11 0.007703 0.01148 0.01278 0.35% FabArray::setDomainBndry() 41 0.00497 0.01036 0.01232 0.33% Castro::construct_old_gravity_source() 10 0.004934 0.01014 0.01176 0.32% Castro::initialize_advance() 10 0.01069 0.01106 0.01163 0.31% Gravity::get_old_grav_vector() 10 0.005641 0.009245 0.01058 0.29% main() 1 0.00428 0.006522 0.00757 0.20% Castro::construct_new_source() 50 0.004863 0.006576 0.007294 0.20% Castro::enforce_min_density() 62 0.005998 0.006677 0.007189 0.19% Castro::initMFs() 1 0.006619 0.006739 0.006964 0.19% StateData::define() 4 0.005552 0.005668 0.006241 0.17% Castro::swap_state_time_levels() 10 0.003361 0.00442 0.004663 0.13% Amr::coarseTimeStep() 10 0.0009435 0.00149 0.003072 0.08% Castro::finalize_do_advance() 10 0.0006463 0.001425 0.001654 0.04% Castro::buildMetrics() 1 0.001564 0.001582 0.001606 0.04% Amr::timeStep() 10 0.0001612 0.0002301 0.0004749 0.01% Amr::InitAmr() 1 0.0002576 0.0002887 0.0004008 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002891 0.0003067 0.0003419 0.01% Castro::clean_state() 62 0.0001419 0.0001588 0.0001738 0.00% DistributionMapping::LeastUsedCPUs() 1 6.708e-06 0.0001215 0.0001562 0.00% StateDataPhysBCFunct::() 41 9.797e-05 0.0001257 0.0001412 0.00% Castro::enforce_consistent_e() 1 7.807e-05 9.603e-05 0.0001119 0.00% Castro::Castro() 1 6.214e-05 8.086e-05 0.0001082 0.00% Amr::FinalizeInit() 1 4.033e-06 1.75e-05 0.000105 0.00% FabArray::ParallelCopy() 41 7.968e-05 8.855e-05 9.745e-05 0.00% Castro::construct_old_source() 50 3.928e-05 7.51e-05 9.622e-05 0.00% Castro::do_old_sources() 10 4.363e-05 7.009e-05 9.43e-05 0.00% Castro::do_new_sources() 10 4.341e-05 7.157e-05 9.01e-05 0.00% FabArrayBase::getCPC() 41 5.071e-05 6.436e-05 7.897e-05 0.00% Castro::apply_source_to_state() 20 3.684e-05 5.451e-05 7.775e-05 0.00% FillPatchSingleLevel 41 6.788e-05 7.175e-05 7.66e-05 0.00% Amr::defBaseLevel() 1 4.078e-05 5.357e-05 7.61e-05 0.00% Amr::writeSmallPlotFile() 1 2.502e-05 5.282e-05 7.222e-05 0.00% Castro::subcycle_advance_ctu() 10 3.555e-05 4.749e-05 6.667e-05 0.00% Castro::advance() 10 3.3e-05 4.717e-05 6.388e-05 0.00% Castro::construct_old_gravity() 10 3.945e-05 5.248e-05 6.209e-05 0.00% Castro::construct_new_gravity() 10 3.953e-05 4.73e-05 5.758e-05 0.00% Castro::finalize_advance() 10 4.643e-05 5.22e-05 5.485e-05 0.00% Castro::enforce_speed_limit() 62 2.29e-05 2.928e-05 3.539e-05 0.00% FabArrayBase::CPC::define() 2 2.167e-05 2.588e-05 3.424e-05 0.00% Castro::post_timestep() 10 1.494e-05 2.342e-05 3.054e-05 0.00% Castro::check_for_nan() 20 2.221e-05 2.464e-05 2.706e-05 0.00% Gravity::swapTimeLevels() 10 6.186e-06 1.309e-05 1.627e-05 0.00% Castro::create_source_corrector() 10 6.899e-06 1.158e-05 1.444e-05 0.00% AmrLevel::AmrLevel(dm) 1 7.479e-06 9.088e-06 1.144e-05 0.00% Castro::computeNewDt() 9 7.404e-06 9.34e-06 1.094e-05 0.00% Gravity::set_mass_offset() 10 7.203e-06 9.441e-06 1.078e-05 0.00% Castro::FluxRegCrseInit 10 4.746e-06 8.199e-06 1.049e-05 0.00% Amr::initSubcycle() 1 8.274e-06 8.608e-06 9.596e-06 0.00% Amr::InitializeInit() 1 1.863e-06 3.411e-06 7.617e-06 0.00% Castro::retry_advance_ctu() 10 3.714e-06 5.904e-06 7.541e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.487e-06 4.384e-06 6.946e-06 0.00% Castro::post_init() 1 3.244e-06 4.047e-06 5.335e-06 0.00% Castro::post_regrid() 1 1.859e-06 3.129e-06 4.7e-06 0.00% Amr::init() 1 1.919e-06 2.566e-06 4.299e-06 0.00% Castro::computeInitialDt() 2 3.196e-06 3.907e-06 4.281e-06 0.00% Amr::initialInit() 1 1.407e-06 1.828e-06 2.767e-06 0.00% Castro::FluxRegFineAdd() 10 1.875e-06 2.252e-06 2.647e-06 0.00% DistributionMapping::Distribute() 1 8.39e-07 9.73e-07 1.208e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.693 3.695 3.696 100.00% Amr::coarseTimeStep() 10 3.452 3.452 3.452 93.40% Amr::timeStep() 10 3.441 3.443 3.443 93.15% Castro::advance() 10 3.426 3.427 3.427 92.71% Castro::subcycle_advance_ctu() 10 3.352 3.353 3.354 90.74% Castro::do_advance_ctu() 10 3.352 3.353 3.354 90.74% Castro::construct_ctu_hydro_source() 10 2.16 2.416 2.511 67.93% Gravity::make_radial_gravity() 21 0.3411 0.3551 0.3762 10.18% Gravity::get_new_grav_vector() 11 0.2321 0.234 0.2354 6.37% Castro::construct_old_gravity() 10 0.199 0.2115 0.2282 6.17% Gravity::get_old_grav_vector() 10 0.1982 0.2107 0.2277 6.16% FillPatchIterator::Initialize 41 0.1895 0.1982 0.2146 5.81% Castro::construct_new_gravity() 10 0.2073 0.2084 0.2099 5.68% Castro::initialize_do_advance() 10 0.1654 0.1797 0.1893 5.12% FillPatchSingleLevel 41 0.1379 0.1517 0.1849 5.00% Amr::init() 1 0.1829 0.183 0.183 4.95% Amr::initialInit() 1 0.1657 0.166 0.1665 4.50% FabArray::ParallelCopy() 41 0.09422 0.1089 0.1454 3.94% Castro::expand_state() 10 0.1244 0.1316 0.1404 3.80% Amr::InitializeInit() 1 0.06063 0.1001 0.1372 3.71% Amr::defBaseLevel() 1 0.06062 0.1001 0.1372 3.71% Castro::clean_state() 62 0.1105 0.1167 0.1212 3.28% Castro::initData() 1 0.04359 0.08279 0.12 3.25% FabArray::ParallelCopy_finish() 41 0.04539 0.06408 0.1166 3.15% Castro::estTimeStep() 21 0.03113 0.06991 0.1078 2.92% Amr::FinalizeInit() 1 0.02879 0.06596 0.1051 2.84% Castro::computeInitialDt() 2 0.001726 0.03883 0.0783 2.12% Castro::initialize_advance() 10 0.07183 0.07395 0.07491 2.03% FabArray::setVal() 143 0.06687 0.07201 0.07344 1.99% Castro::computeTemp() 63 0.06491 0.06933 0.07208 1.95% Amr::writePlotFile() 2 0.06969 0.07014 0.07047 1.91% Castro::do_new_sources() 10 0.05426 0.06392 0.06874 1.86% Castro::reset_internal_energy(MultiFab) 63 0.04737 0.05026 0.05196 1.41% Castro::reset_internal_energy(Fab) 1008 0.04706 0.04995 0.05166 1.40% FabArray::ParallelCopy_nowait() 41 0.02881 0.0447 0.04994 1.35% Castro::do_old_sources() 10 0.03292 0.04572 0.04978 1.35% StateDataPhysBCFunct::() 41 0.03764 0.04281 0.04653 1.26% StateData::FillBoundary(geom) 41 0.03754 0.04268 0.04639 1.26% Castro::normalize_species() 62 0.04038 0.04148 0.04267 1.15% Castro::construct_new_source() 50 0.02488 0.02988 0.03123 0.85% Gravity::interpolate_monopole_grav() 21 0.02637 0.02745 0.02801 0.76% Castro::post_init() 1 0.0261 0.02644 0.02686 0.73% Castro::construct_new_gravity_source() 10 0.02002 0.02331 0.02543 0.69% VisMF::Write(FabArray) 2 0.01343 0.01424 0.01768 0.48% Castro::post_timestep() 10 0.01499 0.01575 0.01624 0.44% Castro::apply_source_to_state() 20 0.008704 0.01444 0.01623 0.44% MultiFab::Saxpy() 20 0.008667 0.01438 0.01618 0.44% Castro::check_for_nan() 20 0.009893 0.01158 0.0129 0.35% MultiFab::contains_nan() 20 0.00987 0.01156 0.01288 0.35% FabArray::setDomainBndry() 41 0.00497 0.01036 0.01232 0.33% Castro::construct_old_source() 50 0.004973 0.01022 0.01185 0.32% Castro::construct_old_gravity_source() 10 0.004934 0.01014 0.01176 0.32% Castro::Castro() 1 0.01121 0.01142 0.0117 0.32% Castro::enforce_min_density() 62 0.005998 0.006677 0.007189 0.19% Castro::computeNewDt() 9 0.007087 0.007105 0.007114 0.19% Castro::initMFs() 1 0.006619 0.006739 0.006964 0.19% AmrLevel::AmrLevel(dm) 1 0.005559 0.005677 0.00625 0.17% StateData::define() 4 0.005552 0.005668 0.006241 0.17% Castro::swap_state_time_levels() 10 0.003361 0.00442 0.004663 0.13% Castro::buildMetrics() 1 0.001685 0.00171 0.001733 0.05% Castro::post_regrid() 1 0.001518 0.001604 0.001658 0.04% Castro::finalize_do_advance() 10 0.0006463 0.001425 0.001654 0.04% Amr::InitAmr() 1 0.0002665 0.0002973 0.0004091 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.114e-05 0.0001269 0.0001625 0.00% DistributionMapping::LeastUsedCPUs() 1 6.708e-06 0.0001215 0.0001562 0.00% Castro::enforce_consistent_e() 1 7.807e-05 9.603e-05 0.0001119 0.00% FabArrayBase::getCPC() 41 7.565e-05 9.023e-05 0.0001006 0.00% Amr::writeSmallPlotFile() 1 2.502e-05 5.282e-05 7.222e-05 0.00% Castro::finalize_advance() 10 5.305e-05 6.265e-05 6.671e-05 0.00% Castro::enforce_speed_limit() 62 2.29e-05 2.928e-05 3.539e-05 0.00% FabArrayBase::CPC::define() 2 2.167e-05 2.588e-05 3.424e-05 0.00% Gravity::swapTimeLevels() 10 6.186e-06 1.309e-05 1.627e-05 0.00% Castro::create_source_corrector() 10 6.899e-06 1.158e-05 1.444e-05 0.00% Gravity::set_mass_offset() 10 7.203e-06 9.441e-06 1.078e-05 0.00% Castro::FluxRegCrseInit 10 4.746e-06 8.199e-06 1.049e-05 0.00% Amr::initSubcycle() 1 8.274e-06 8.608e-06 9.596e-06 0.00% Castro::retry_advance_ctu() 10 3.714e-06 5.904e-06 7.541e-06 0.00% Castro::FluxRegFineAdd() 10 1.875e-06 2.252e-06 2.647e-06 0.00% DistributionMapping::Distribute() 1 8.39e-07 9.73e-07 1.208e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.08-17-g8294c3afbcbb) finalized