MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.08-18-g3d29fd7d0e81) initialized Starting run at 05:39:34 UTC on 2022-08-29. Successfully read inputs file ... Castro git describe: 22.08-11-ga978fcf88 AMReX git describe: 22.08-18-g3d29fd7d0 Microphysics git describe: 22.08-6-ge3a6cb11 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015117867 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.366246366 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.348371567 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.345714824 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.343567342 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.353648714 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.353063788 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.338599455 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.340212389 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.337755292 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.339434358 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.01032497 seconds Ending run at 05:39:38 UTC on 2022-08-29. Run time = 3.687893932 Run time without initialization = 3.48475127 Average number of zones advanced per microsecond: 0.752 Average number of zones advanced per microsecond per rank: 0.094 TinyProfiler total time across processes [min...avg...max]: 3.685 ... 3.687 ... 3.688 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1158 2.3988 2.5318 68.65% Castro::do_advance_ctu() 10 0.03191 0.1672 0.4557 12.36% Gravity::make_radial_gravity() 21 0.339 0.3517 0.3699 10.03% Castro::initData() 1 0.03948 0.08101 0.1367 3.71% Castro::estTimeStep() 21 0.02731 0.08507 0.1293 3.51% FabArray::ParallelCopy_finish() 41 0.04383 0.0603 0.1065 2.89% FabArray::setVal() 143 0.0702 0.07229 0.07418 2.01% Castro::reset_internal_energy(Fab) 1008 0.04708 0.05019 0.05192 1.41% FabArray::ParallelCopy_nowait() 41 0.03115 0.04503 0.05018 1.36% StateData::FillBoundary(geom) 41 0.03656 0.04239 0.04686 1.27% Castro::normalize_species() 62 0.03985 0.04145 0.04299 1.17% FillPatchIterator::Initialize 41 0.02411 0.03628 0.04058 1.10% Gravity::interpolate_monopole_grav() 21 0.02598 0.02732 0.02779 0.75% Castro::construct_new_gravity_source() 10 0.02141 0.02348 0.02452 0.66% Castro::expand_state() 10 0.01089 0.01867 0.02204 0.60% Castro::initialize_do_advance() 10 0.009704 0.01757 0.01999 0.54% Castro::computeTemp() 63 0.01702 0.01899 0.01977 0.54% MultiFab::Saxpy() 20 0.01137 0.01482 0.01647 0.45% VisMF::Write(FabArray) 2 0.01221 0.01284 0.01533 0.42% Amr::writePlotFile() 2 0.01034 0.01304 0.01369 0.37% Gravity::get_new_grav_vector() 11 0.009722 0.0119 0.01352 0.37% FabArray::setDomainBndry() 41 0.005609 0.01061 0.01249 0.34% Castro::construct_old_gravity_source() 10 0.00587 0.0106 0.01238 0.34% MultiFab::contains_nan() 20 0.0102 0.01111 0.01235 0.33% Gravity::get_old_grav_vector() 10 0.006054 0.009649 0.01135 0.31% Castro::initialize_advance() 10 0.01065 0.01089 0.01134 0.31% Castro::initMFs() 1 0.006594 0.006883 0.008717 0.24% Castro::construct_new_source() 50 0.005181 0.006623 0.007179 0.19% main() 1 0.004611 0.006174 0.007116 0.19% Castro::enforce_min_density() 62 0.005716 0.006109 0.00646 0.18% StateData::define() 4 0.005438 0.005563 0.006236 0.17% Castro::swap_state_time_levels() 10 0.003419 0.004587 0.004819 0.13% Amr::coarseTimeStep() 10 0.0007973 0.00204 0.003853 0.10% Castro::finalize_do_advance() 10 0.001538 0.001807 0.002074 0.06% Castro::buildMetrics() 1 0.001537 0.001578 0.001784 0.05% Amr::timeStep() 10 0.000169 0.0002286 0.0004879 0.01% Amr::InitAmr() 1 0.0002598 0.0002906 0.0004011 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002925 0.0003048 0.0003411 0.01% Castro::clean_state() 62 0.0001427 0.0001618 0.0001741 0.00% StateDataPhysBCFunct::() 41 9.848e-05 0.0001276 0.000154 0.00% DistributionMapping::LeastUsedCPUs() 1 6.628e-06 0.0001212 0.0001528 0.00% Castro::Castro() 1 5.796e-05 7.252e-05 0.0001123 0.00% Castro::construct_old_source() 50 4.429e-05 8.284e-05 0.0001078 0.00% FabArray::ParallelCopy() 41 6.43e-05 8.324e-05 9.9e-05 0.00% Castro::enforce_consistent_e() 1 7.984e-05 8.631e-05 9.274e-05 0.00% Amr::FinalizeInit() 1 3.694e-06 1.528e-05 9.084e-05 0.00% Castro::do_new_sources() 10 4.271e-05 6.903e-05 8.922e-05 0.00% Castro::do_old_sources() 10 3.835e-05 6.94e-05 8.222e-05 0.00% FillPatchSingleLevel 41 5.898e-05 6.596e-05 7.27e-05 0.00% Amr::writeSmallPlotFile() 1 2.487e-05 4.469e-05 6.828e-05 0.00% Castro::construct_old_gravity() 10 3.287e-05 5.512e-05 6.593e-05 0.00% Castro::subcycle_advance_ctu() 10 3.272e-05 5.15e-05 6.581e-05 0.00% Castro::apply_source_to_state() 20 3.084e-05 5.064e-05 6.203e-05 0.00% FabArrayBase::getCPC() 41 4.52e-05 5.072e-05 6.162e-05 0.00% Castro::finalize_advance() 10 4.908e-05 5.197e-05 5.726e-05 0.00% Amr::defBaseLevel() 1 3.789e-05 4.748e-05 5.618e-05 0.00% Castro::construct_new_gravity() 10 3.694e-05 4.597e-05 5.172e-05 0.00% Castro::advance() 10 3.108e-05 4.252e-05 4.996e-05 0.00% FabArrayBase::CPC::define() 2 2.348e-05 3e-05 3.785e-05 0.00% Castro::check_for_nan() 20 1.997e-05 2.37e-05 3.095e-05 0.00% Castro::enforce_speed_limit() 62 2.049e-05 2.632e-05 3.084e-05 0.00% AmrLevel::AmrLevel(dm) 1 6.814e-06 1.178e-05 2.113e-05 0.00% Amr::initSubcycle() 1 8.309e-06 9.876e-06 1.708e-05 0.00% Castro::post_timestep() 10 1.296e-05 1.466e-05 1.69e-05 0.00% Castro::create_source_corrector() 10 6.32e-06 1.076e-05 1.31e-05 0.00% Gravity::swapTimeLevels() 10 7.979e-06 1.143e-05 1.306e-05 0.00% Castro::computeNewDt() 9 7.351e-06 9.11e-06 1.134e-05 0.00% Castro::FluxRegCrseInit 10 5.724e-06 8.398e-06 1.116e-05 0.00% Gravity::set_mass_offset() 10 5.916e-06 8.612e-06 1.04e-05 0.00% Castro::retry_advance_ctu() 10 4.306e-06 6.557e-06 7.843e-06 0.00% Castro::post_init() 1 2.963e-06 3.997e-06 7.5e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.591e-06 4.698e-06 6.93e-06 0.00% Amr::InitializeInit() 1 1.917e-06 3.336e-06 6.837e-06 0.00% Castro::computeInitialDt() 2 3.242e-06 3.758e-06 4.673e-06 0.00% Castro::post_regrid() 1 1.72e-06 2.887e-06 4.264e-06 0.00% Castro::FluxRegFineAdd() 10 2.111e-06 2.427e-06 2.838e-06 0.00% Amr::initialInit() 1 1.375e-06 1.784e-06 2.388e-06 0.00% Amr::init() 1 1.566e-06 1.877e-06 2.377e-06 0.00% DistributionMapping::Distribute() 1 8.91e-07 1.243e-06 2.072e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.685 3.687 3.688 100.00% Amr::coarseTimeStep() 10 3.467 3.467 3.467 94.02% Amr::timeStep() 10 3.456 3.457 3.459 93.78% Castro::advance() 10 3.441 3.441 3.442 93.32% Castro::subcycle_advance_ctu() 10 3.366 3.368 3.37 91.38% Castro::do_advance_ctu() 10 3.366 3.368 3.37 91.37% Castro::construct_ctu_hydro_source() 10 2.116 2.399 2.532 68.65% Gravity::make_radial_gravity() 21 0.339 0.3517 0.3699 10.03% Gravity::get_new_grav_vector() 11 0.2244 0.2286 0.2315 6.28% Castro::construct_old_gravity() 10 0.2026 0.2134 0.228 6.18% Gravity::get_old_grav_vector() 10 0.2017 0.2126 0.2274 6.17% Castro::construct_new_gravity() 10 0.2003 0.2039 0.2065 5.60% FillPatchIterator::Initialize 41 0.1877 0.195 0.2043 5.54% Amr::init() 1 0.2026 0.2027 0.2027 5.50% Amr::initialInit() 1 0.187 0.1872 0.1874 5.08% Castro::initialize_do_advance() 10 0.1628 0.178 0.186 5.04% FillPatchSingleLevel 41 0.1356 0.1481 0.1745 4.73% Amr::InitializeInit() 1 0.06036 0.1021 0.1592 4.32% Amr::defBaseLevel() 1 0.06036 0.1021 0.1592 4.32% Castro::initData() 1 0.04356 0.0851 0.1407 3.81% FabArray::ParallelCopy() 41 0.09249 0.1055 0.1378 3.74% Castro::expand_state() 10 0.1233 0.1304 0.1365 3.70% Castro::estTimeStep() 21 0.02731 0.08507 0.1293 3.51% Amr::FinalizeInit() 1 0.02775 0.08514 0.1269 3.44% Castro::clean_state() 62 0.1093 0.1163 0.1186 3.22% FabArray::ParallelCopy_finish() 41 0.04383 0.0603 0.1065 2.89% Castro::computeInitialDt() 2 0.001715 0.05884 0.1006 2.73% Castro::initialize_advance() 10 0.07116 0.07333 0.07474 2.03% FabArray::setVal() 143 0.0702 0.07229 0.07418 2.01% Castro::computeTemp() 63 0.06439 0.06948 0.07199 1.95% Castro::do_new_sources() 10 0.06237 0.0648 0.06561 1.78% Castro::reset_internal_energy(MultiFab) 63 0.04737 0.05049 0.05222 1.42% Castro::reset_internal_energy(Fab) 1008 0.04708 0.05019 0.05192 1.41% FabArray::ParallelCopy_nowait() 41 0.03123 0.04511 0.05025 1.36% Castro::do_old_sources() 10 0.0372 0.04667 0.04998 1.36% StateDataPhysBCFunct::() 41 0.03666 0.04251 0.04699 1.27% StateData::FillBoundary(geom) 41 0.03656 0.04239 0.04686 1.27% Castro::normalize_species() 62 0.03985 0.04145 0.04299 1.17% Castro::construct_new_source() 50 0.02659 0.0301 0.03134 0.85% Gravity::interpolate_monopole_grav() 21 0.02598 0.02732 0.02779 0.75% Amr::writePlotFile() 2 0.02566 0.02588 0.02614 0.71% Castro::post_init() 1 0.0251 0.02558 0.02585 0.70% Castro::construct_new_gravity_source() 10 0.02141 0.02348 0.02452 0.66% Castro::post_timestep() 10 0.01418 0.01575 0.01653 0.45% Castro::apply_source_to_state() 20 0.0114 0.01487 0.01652 0.45% MultiFab::Saxpy() 20 0.01137 0.01482 0.01647 0.45% VisMF::Write(FabArray) 2 0.01221 0.01284 0.01533 0.42% FabArray::setDomainBndry() 41 0.005609 0.01061 0.01249 0.34% Castro::construct_old_source() 50 0.005924 0.01068 0.01246 0.34% Castro::check_for_nan() 20 0.01022 0.01114 0.01238 0.34% Castro::construct_old_gravity_source() 10 0.00587 0.0106 0.01238 0.34% MultiFab::contains_nan() 20 0.0102 0.01111 0.01235 0.33% Castro::Castro() 1 0.01099 0.01124 0.01213 0.33% Castro::initMFs() 1 0.006594 0.006883 0.008717 0.24% Castro::computeNewDt() 9 0.007102 0.007107 0.007116 0.19% Castro::enforce_min_density() 62 0.005716 0.006109 0.00646 0.18% AmrLevel::AmrLevel(dm) 1 0.005452 0.005575 0.006249 0.17% StateData::define() 4 0.005438 0.005563 0.006236 0.17% Castro::swap_state_time_levels() 10 0.003419 0.004587 0.004819 0.13% Castro::finalize_do_advance() 10 0.001538 0.001807 0.002074 0.06% Castro::buildMetrics() 1 0.001659 0.001708 0.001945 0.05% Castro::post_regrid() 1 0.001492 0.001621 0.001847 0.05% Amr::InitAmr() 1 0.0002683 0.0003004 0.0004095 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.117e-05 0.0001271 0.0001594 0.00% DistributionMapping::LeastUsedCPUs() 1 6.628e-06 0.0001212 0.0001528 0.00% FabArrayBase::getCPC() 41 6.954e-05 8.073e-05 9.333e-05 0.00% Castro::enforce_consistent_e() 1 7.984e-05 8.631e-05 9.274e-05 0.00% Castro::finalize_advance() 10 5.736e-05 6.28e-05 6.922e-05 0.00% Amr::writeSmallPlotFile() 1 2.487e-05 4.469e-05 6.828e-05 0.00% FabArrayBase::CPC::define() 2 2.348e-05 3e-05 3.785e-05 0.00% Castro::enforce_speed_limit() 62 2.049e-05 2.632e-05 3.084e-05 0.00% Amr::initSubcycle() 1 8.309e-06 9.876e-06 1.708e-05 0.00% Castro::create_source_corrector() 10 6.32e-06 1.076e-05 1.31e-05 0.00% Gravity::swapTimeLevels() 10 7.979e-06 1.143e-05 1.306e-05 0.00% Castro::FluxRegCrseInit 10 5.724e-06 8.398e-06 1.116e-05 0.00% Gravity::set_mass_offset() 10 5.916e-06 8.612e-06 1.04e-05 0.00% Castro::retry_advance_ctu() 10 4.306e-06 6.557e-06 7.843e-06 0.00% Castro::FluxRegFineAdd() 10 2.111e-06 2.427e-06 2.838e-06 0.00% DistributionMapping::Distribute() 1 8.91e-07 1.243e-06 2.072e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.08-18-g3d29fd7d0e81) finalized