MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.08-18-g3d29fd7d0e81) initialized Starting run at 05:39:49 UTC on 2022-08-30. Successfully read inputs file ... Castro git describe: 22.08-11-ga978fcf88 AMReX git describe: 22.08-18-g3d29fd7d0 Microphysics git describe: 22.08-6-ge3a6cb11 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016934146 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.369872171 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.345976794 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.344622013 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.343988021 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.350759187 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.346860359 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.339570735 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.339739344 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.33998029 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.339085199 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.044037577 seconds Ending run at 05:39:53 UTC on 2022-08-30. Run time = 3.76054118 Run time without initialization = 3.512396671 Average number of zones advanced per microsecond: 0.746 Average number of zones advanced per microsecond per rank: 0.093 TinyProfiler total time across processes [min...avg...max]: 3.76 ... 3.76 ... 3.761 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1129 2.4227 2.5259 67.17% Castro::do_advance_ctu() 10 0.0406 0.15 0.463 12.31% Gravity::make_radial_gravity() 21 0.3494 0.3622 0.3897 10.36% Castro::initData() 1 0.04758 0.1017 0.1609 4.28% Castro::estTimeStep() 21 0.02504 0.09106 0.1453 3.86% FabArray::ParallelCopy_finish() 41 0.0391 0.06088 0.1287 3.42% FabArray::setVal() 143 0.05418 0.06639 0.07099 1.89% Castro::reset_internal_energy(Fab) 1008 0.04767 0.05083 0.05389 1.43% FabArray::ParallelCopy_nowait() 41 0.02672 0.04445 0.05026 1.34% StateData::FillBoundary(geom) 41 0.03493 0.04243 0.04854 1.29% Amr::writePlotFile() 2 0.0451 0.04716 0.04797 1.28% Castro::normalize_species() 62 0.03944 0.042 0.04324 1.15% FillPatchIterator::Initialize 41 0.02325 0.03598 0.04087 1.09% Gravity::interpolate_monopole_grav() 21 0.02579 0.02747 0.0289 0.77% Castro::construct_new_gravity_source() 10 0.01938 0.02263 0.02377 0.63% Castro::expand_state() 10 0.009795 0.01851 0.02222 0.59% Castro::computeTemp() 63 0.01805 0.01948 0.02064 0.55% Castro::initialize_do_advance() 10 0.009438 0.01732 0.01949 0.52% MultiFab::Saxpy() 20 0.008623 0.01437 0.01641 0.44% VisMF::Write(FabArray) 2 0.01241 0.01317 0.0161 0.43% Gravity::get_new_grav_vector() 11 0.00833 0.01162 0.01304 0.35% FabArray::setDomainBndry() 41 0.004796 0.01036 0.01245 0.33% MultiFab::contains_nan() 20 0.009242 0.01089 0.01179 0.31% Castro::construct_old_gravity_source() 10 0.004844 0.01002 0.01175 0.31% Gravity::get_old_grav_vector() 10 0.005394 0.009393 0.0115 0.31% Castro::initialize_advance() 10 0.00655 0.01001 0.01088 0.29% Castro::initMFs() 1 0.00682 0.008703 0.01008 0.27% StateData::define() 4 0.005672 0.007163 0.008276 0.22% Castro::construct_new_source() 50 0.004677 0.006494 0.007164 0.19% main() 1 0.006409 0.006782 0.007146 0.19% Castro::enforce_min_density() 62 0.005164 0.006059 0.00645 0.17% Castro::swap_state_time_levels() 10 0.00331 0.004398 0.005251 0.14% Amr::coarseTimeStep() 10 0.000952 0.001684 0.003488 0.09% Castro::buildMetrics() 1 0.001607 0.002042 0.002385 0.06% Castro::finalize_do_advance() 10 0.0007779 0.001418 0.001583 0.04% Amr::timeStep() 10 0.000173 0.0002411 0.0005715 0.02% Amr::InitAmr() 1 0.0002886 0.0004057 0.0004934 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002951 0.0003063 0.0003169 0.01% DistributionMapping::LeastUsedCPUs() 1 5.938e-06 0.0001104 0.0002532 0.01% Castro::clean_state() 62 0.0001259 0.0001487 0.0001582 0.00% Castro::enforce_consistent_e() 1 8.654e-05 0.0001157 0.0001545 0.00% StateDataPhysBCFunct::() 41 0.0001033 0.0001225 0.0001408 0.00% FabArray::ParallelCopy() 41 5.853e-05 8.027e-05 9.466e-05 0.00% Castro::Castro() 1 5.393e-05 6.855e-05 9.407e-05 0.00% Castro::construct_old_source() 50 3.025e-05 7.154e-05 9.132e-05 0.00% Castro::do_new_sources() 10 3.912e-05 6.688e-05 8.067e-05 0.00% Amr::FinalizeInit() 1 4.201e-06 1.434e-05 7.963e-05 0.00% Castro::do_old_sources() 10 4.053e-05 6.513e-05 7.774e-05 0.00% FillPatchSingleLevel 41 5.56e-05 6.633e-05 7.382e-05 0.00% Castro::advance() 10 3.092e-05 4.586e-05 7.094e-05 0.00% Castro::construct_old_gravity() 10 3.311e-05 5.377e-05 7.065e-05 0.00% Amr::writeSmallPlotFile() 1 3.169e-05 5.562e-05 6.554e-05 0.00% FabArrayBase::getCPC() 41 4.703e-05 5.372e-05 6.549e-05 0.00% Castro::subcycle_advance_ctu() 10 3.571e-05 4.943e-05 6.359e-05 0.00% Castro::apply_source_to_state() 20 3.697e-05 5.011e-05 6.033e-05 0.00% Castro::finalize_advance() 10 5.008e-05 5.436e-05 5.878e-05 0.00% Castro::construct_new_gravity() 10 3.69e-05 4.508e-05 5.616e-05 0.00% Amr::defBaseLevel() 1 3.713e-05 4.493e-05 5.413e-05 0.00% Castro::enforce_speed_limit() 62 2.188e-05 2.843e-05 3.592e-05 0.00% FabArrayBase::CPC::define() 2 2.217e-05 2.532e-05 3.058e-05 0.00% Castro::check_for_nan() 20 1.841e-05 2.333e-05 2.579e-05 0.00% AmrLevel::AmrLevel(dm) 1 7.747e-06 1.386e-05 1.967e-05 0.00% Gravity::swapTimeLevels() 10 5.246e-06 1.198e-05 1.748e-05 0.00% Castro::create_source_corrector() 10 6.263e-06 1.173e-05 1.727e-05 0.00% Castro::post_timestep() 10 1.261e-05 1.439e-05 1.545e-05 0.00% Amr::initSubcycle() 1 9.507e-06 1.236e-05 1.523e-05 0.00% Gravity::set_mass_offset() 10 6.439e-06 9.027e-06 1.2e-05 0.00% Castro::computeNewDt() 9 7.022e-06 9.046e-06 1.106e-05 0.00% Amr::InitializeInit() 1 2.422e-06 4.665e-06 1.099e-05 0.00% Castro::FluxRegCrseInit 10 5.71e-06 7.976e-06 9.672e-06 0.00% Castro::retry_advance_ctu() 10 4.861e-06 6.14e-06 7.571e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.102e-06 4.94e-06 7.054e-06 0.00% Castro::post_init() 1 3.14e-06 4.238e-06 6.484e-06 0.00% Castro::post_regrid() 1 2.126e-06 3.193e-06 5.12e-06 0.00% Castro::computeInitialDt() 2 3.151e-06 3.691e-06 4.81e-06 0.00% DistributionMapping::Distribute() 1 1.145e-06 1.731e-06 4.536e-06 0.00% Castro::FluxRegFineAdd() 10 2.048e-06 2.429e-06 2.837e-06 0.00% Amr::init() 1 1.683e-06 2.073e-06 2.577e-06 0.00% Amr::initialInit() 1 1.125e-06 1.718e-06 2.165e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.76 3.76 3.761 100.00% Amr::coarseTimeStep() 10 3.461 3.461 3.461 92.04% Amr::timeStep() 10 3.449 3.451 3.452 91.79% Castro::advance() 10 3.434 3.435 3.435 91.34% Castro::subcycle_advance_ctu() 10 3.361 3.365 3.377 89.81% Castro::do_advance_ctu() 10 3.361 3.365 3.377 89.81% Castro::construct_ctu_hydro_source() 10 2.113 2.423 2.526 67.17% Gravity::make_radial_gravity() 21 0.3494 0.3622 0.3897 10.36% Amr::init() 1 0.2475 0.2476 0.2477 6.59% Gravity::get_new_grav_vector() 11 0.2398 0.2415 0.2437 6.48% Castro::construct_old_gravity() 10 0.2011 0.2115 0.2329 6.19% Gravity::get_old_grav_vector() 10 0.2002 0.2107 0.2323 6.18% Amr::initialInit() 1 0.2304 0.2314 0.2322 6.17% FillPatchIterator::Initialize 41 0.1873 0.1945 0.2187 5.82% Castro::construct_new_gravity() 10 0.2017 0.2036 0.2046 5.44% FillPatchSingleLevel 41 0.1346 0.1481 0.1907 5.07% Amr::InitializeInit() 1 0.06957 0.1264 0.1892 5.03% Amr::defBaseLevel() 1 0.06956 0.1264 0.1892 5.03% Castro::initialize_do_advance() 10 0.1654 0.1758 0.1812 4.82% Castro::initData() 1 0.05163 0.1064 0.1661 4.42% Amr::FinalizeInit() 1 0.04168 0.105 0.1626 4.32% FabArray::ParallelCopy() 41 0.08889 0.1055 0.1556 4.14% Castro::estTimeStep() 21 0.02504 0.09106 0.1453 3.86% Castro::expand_state() 10 0.1218 0.1283 0.1321 3.51% FabArray::ParallelCopy_finish() 41 0.0391 0.06088 0.1287 3.42% Castro::clean_state() 62 0.1102 0.1176 0.1231 3.27% Castro::computeInitialDt() 2 0.002021 0.06499 0.1219 3.24% Castro::computeTemp() 63 0.06602 0.07062 0.07484 1.99% Castro::initialize_advance() 10 0.05674 0.06963 0.07359 1.96% FabArray::setVal() 143 0.05418 0.06639 0.07099 1.89% Castro::do_new_sources() 10 0.05274 0.06275 0.06482 1.72% Amr::writePlotFile() 2 0.05964 0.06032 0.0612 1.63% Castro::reset_internal_energy(MultiFab) 63 0.04797 0.05114 0.0542 1.44% Castro::reset_internal_energy(Fab) 1008 0.04767 0.05083 0.05389 1.43% FabArray::ParallelCopy_nowait() 41 0.02679 0.04453 0.05033 1.34% StateDataPhysBCFunct::() 41 0.03503 0.04255 0.04867 1.29% Castro::do_old_sources() 10 0.03229 0.04507 0.04861 1.29% StateData::FillBoundary(geom) 41 0.03493 0.04243 0.04854 1.29% Castro::normalize_species() 62 0.03944 0.042 0.04324 1.15% Castro::post_init() 1 0.03767 0.03865 0.03989 1.06% Castro::construct_new_source() 50 0.02405 0.02913 0.0308 0.82% Gravity::interpolate_monopole_grav() 21 0.02579 0.02747 0.0289 0.77% Castro::construct_new_gravity_source() 10 0.01938 0.02263 0.02377 0.63% Castro::post_timestep() 10 0.01485 0.01609 0.01676 0.45% Castro::apply_source_to_state() 20 0.008665 0.01442 0.01647 0.44% MultiFab::Saxpy() 20 0.008623 0.01437 0.01641 0.44% VisMF::Write(FabArray) 2 0.01241 0.01317 0.0161 0.43% Castro::Castro() 1 0.009917 0.01262 0.01475 0.39% FabArray::setDomainBndry() 41 0.004796 0.01036 0.01245 0.33% Castro::construct_old_source() 50 0.004874 0.01009 0.01184 0.31% Castro::check_for_nan() 20 0.009263 0.01091 0.01182 0.31% MultiFab::contains_nan() 20 0.009242 0.01089 0.01179 0.31% Castro::construct_old_gravity_source() 10 0.004844 0.01002 0.01175 0.31% Castro::initMFs() 1 0.00682 0.008703 0.01008 0.27% AmrLevel::AmrLevel(dm) 1 0.005685 0.007177 0.008296 0.22% StateData::define() 4 0.005672 0.007163 0.008276 0.22% Castro::computeNewDt() 9 0.00734 0.007363 0.00738 0.20% Castro::enforce_min_density() 62 0.005164 0.006059 0.00645 0.17% Castro::swap_state_time_levels() 10 0.00331 0.004398 0.005251 0.14% Castro::post_regrid() 1 0.001598 0.002268 0.002904 0.08% Castro::buildMetrics() 1 0.001723 0.002213 0.002602 0.07% Castro::finalize_do_advance() 10 0.0007779 0.001418 0.001583 0.04% Amr::InitAmr() 1 0.0002981 0.000418 0.0005073 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.166e-05 0.000117 0.0002622 0.01% DistributionMapping::LeastUsedCPUs() 1 5.938e-06 0.0001104 0.0002532 0.01% Castro::enforce_consistent_e() 1 8.654e-05 0.0001157 0.0001545 0.00% FabArrayBase::getCPC() 41 6.925e-05 7.904e-05 9.226e-05 0.00% Castro::finalize_advance() 10 5.784e-05 6.476e-05 6.936e-05 0.00% Amr::writeSmallPlotFile() 1 3.169e-05 5.562e-05 6.554e-05 0.00% Castro::enforce_speed_limit() 62 2.188e-05 2.843e-05 3.592e-05 0.00% FabArrayBase::CPC::define() 2 2.217e-05 2.532e-05 3.058e-05 0.00% Gravity::swapTimeLevels() 10 5.246e-06 1.198e-05 1.748e-05 0.00% Castro::create_source_corrector() 10 6.263e-06 1.173e-05 1.727e-05 0.00% Amr::initSubcycle() 1 9.507e-06 1.236e-05 1.523e-05 0.00% Gravity::set_mass_offset() 10 6.439e-06 9.027e-06 1.2e-05 0.00% Castro::FluxRegCrseInit 10 5.71e-06 7.976e-06 9.672e-06 0.00% Castro::retry_advance_ctu() 10 4.861e-06 6.14e-06 7.571e-06 0.00% DistributionMapping::Distribute() 1 1.145e-06 1.731e-06 4.536e-06 0.00% Castro::FluxRegFineAdd() 10 2.048e-06 2.429e-06 2.837e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.08-18-g3d29fd7d0e81) finalized