MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.09-18-g3e5cc7780280) initialized Starting run at 05:39:40 UTC on 2022-09-23. Successfully read inputs file ... Castro git describe: 22.09 AMReX git describe: 22.09-18-g3e5cc7780 Microphysics git describe: 22.08-15-g5ca9c57c reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015603957 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.358617194 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.342098619 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.339829852 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.340389258 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.350159077 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.350298504 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.337769498 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.338644122 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.33886455 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.338792129 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010413651 seconds Ending run at 05:39:43 UTC on 2022-09-23. Run time = 3.648046605 Run time without initialization = 3.453668494 Average number of zones advanced per microsecond: 0.759 Average number of zones advanced per microsecond per rank: 0.095 TinyProfiler total time across processes [min...avg...max]: 3.645 ... 3.647 ... 3.648 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1143 2.4093 2.5125 68.87% Castro::do_advance_ctu() 10 0.02909 0.1346 0.4324 11.85% Gravity::make_radial_gravity() 21 0.3394 0.353 0.3774 10.35% FabArray::ParallelCopy_finish() 41 0.04205 0.06192 0.1247 3.42% Castro::initData() 1 0.04718 0.082 0.1208 3.31% Castro::estTimeStep() 21 0.02579 0.07097 0.1093 3.00% FabArray::setVal() 143 0.05731 0.06777 0.07033 1.93% Castro::reset_internal_energy(Fab) 1008 0.04526 0.04992 0.05282 1.45% FabArray::ParallelCopy_nowait() 41 0.02789 0.04462 0.05025 1.38% StateData::FillBoundary(geom) 41 0.03633 0.04179 0.04626 1.27% Castro::normalize_species() 62 0.03991 0.04169 0.04275 1.17% FillPatchIterator::Initialize 41 0.02436 0.03596 0.03996 1.10% Gravity::interpolate_monopole_grav() 21 0.02609 0.02747 0.02802 0.77% Castro::construct_new_gravity_source() 10 0.01989 0.02297 0.02397 0.66% Castro::expand_state() 10 0.00997 0.01843 0.02197 0.60% Castro::computeTemp() 63 0.01706 0.01884 0.02006 0.55% Castro::initialize_do_advance() 10 0.0102 0.01739 0.01939 0.53% VisMF::Write(FabArray) 2 0.01276 0.01363 0.01628 0.45% MultiFab::Saxpy() 20 0.008671 0.01432 0.01603 0.44% Amr::writePlotFile() 2 0.009977 0.01257 0.01333 0.37% Gravity::get_new_grav_vector() 11 0.007491 0.01144 0.01285 0.35% MultiFab::contains_nan() 20 0.009695 0.01128 0.01246 0.34% FabArray::setDomainBndry() 41 0.004872 0.0103 0.01224 0.34% Castro::construct_old_gravity_source() 10 0.005002 0.01011 0.01165 0.32% Gravity::get_old_grav_vector() 10 0.005663 0.009363 0.01089 0.30% Castro::initialize_advance() 10 0.003283 0.008794 0.01014 0.28% Castro::initMFs() 1 0.006542 0.008235 0.009955 0.27% StateData::define() 4 0.005458 0.006774 0.008099 0.22% main() 1 0.004159 0.006191 0.007171 0.20% Castro::construct_new_source() 50 0.004831 0.006543 0.007138 0.20% Castro::enforce_min_density() 62 0.006048 0.006667 0.007119 0.20% Castro::swap_state_time_levels() 10 0.003296 0.004345 0.004592 0.13% Amr::coarseTimeStep() 10 0.0007476 0.001791 0.003112 0.09% Castro::buildMetrics() 1 0.001541 0.001926 0.002316 0.06% Castro::finalize_do_advance() 10 0.000646 0.001438 0.001669 0.05% Amr::InitAmr() 1 0.0002604 0.0003854 0.0006126 0.02% DistributionMapping::LeastUsedCPUs() 1 8.071e-06 0.0002794 0.0004323 0.01% Amr::timeStep() 10 0.0001807 0.0002296 0.0003863 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002968 0.0003147 0.0003414 0.01% Castro::clean_state() 62 0.00015 0.0001706 0.0002186 0.01% StateDataPhysBCFunct::() 41 9.05e-05 0.0001233 0.000135 0.00% Castro::enforce_consistent_e() 1 8.295e-05 9.014e-05 9.966e-05 0.00% FabArray::ParallelCopy() 41 6.843e-05 8.607e-05 9.931e-05 0.00% Castro::construct_old_source() 50 4.338e-05 7.811e-05 9.665e-05 0.00% Castro::do_new_sources() 10 4.633e-05 7.114e-05 9.441e-05 0.00% Castro::do_old_sources() 10 4.069e-05 7.235e-05 8.885e-05 0.00% Castro::Castro() 1 5.776e-05 6.916e-05 8.052e-05 0.00% Amr::FinalizeInit() 1 3.521e-06 1.418e-05 8.007e-05 0.00% FillPatchSingleLevel 41 6.241e-05 7.079e-05 7.815e-05 0.00% Castro::apply_source_to_state() 20 3.504e-05 5.384e-05 7.704e-05 0.00% Castro::subcycle_advance_ctu() 10 3.749e-05 5.556e-05 7.404e-05 0.00% Amr::writeSmallPlotFile() 1 2.481e-05 4.823e-05 7.177e-05 0.00% Castro::construct_old_gravity() 10 3.474e-05 5.369e-05 7.087e-05 0.00% FabArrayBase::getCPC() 41 4.399e-05 5.818e-05 6.519e-05 0.00% Castro::advance() 10 3.645e-05 4.985e-05 6.224e-05 0.00% Castro::finalize_advance() 10 4.849e-05 5.284e-05 5.568e-05 0.00% Castro::construct_new_gravity() 10 3.751e-05 4.68e-05 5.171e-05 0.00% Castro::enforce_speed_limit() 62 2.487e-05 3.074e-05 3.937e-05 0.00% Amr::defBaseLevel() 1 2.888e-05 3.464e-05 3.743e-05 0.00% Castro::check_for_nan() 20 2.377e-05 2.717e-05 3.217e-05 0.00% FabArrayBase::CPC::define() 2 2.192e-05 2.521e-05 2.969e-05 0.00% Castro::post_timestep() 10 1.249e-05 1.781e-05 2.677e-05 0.00% AmrLevel::AmrLevel(dm) 1 7.914e-06 1.261e-05 1.774e-05 0.00% Gravity::swapTimeLevels() 10 5.238e-06 1.329e-05 1.702e-05 0.00% Amr::initSubcycle() 1 7.918e-06 1.092e-05 1.425e-05 0.00% Castro::create_source_corrector() 10 5.2e-06 1.024e-05 1.343e-05 0.00% Gravity::set_mass_offset() 10 6.959e-06 9.746e-06 1.227e-05 0.00% Castro::computeNewDt() 9 6.852e-06 9.477e-06 1.209e-05 0.00% Castro::post_regrid() 1 1.875e-06 3.534e-06 9.646e-06 0.00% Castro::FluxRegCrseInit 10 6.109e-06 8.303e-06 9.525e-06 0.00% Castro::post_init() 1 3.4e-06 4.508e-06 8.61e-06 0.00% Castro::retry_advance_ctu() 10 3.803e-06 5.901e-06 7.147e-06 0.00% Amr::InitializeInit() 1 2.113e-06 3.387e-06 6.538e-06 0.00% Castro::computeInitialDt() 2 2.853e-06 4.28e-06 5.624e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.686e-06 4.489e-06 5.102e-06 0.00% Castro::FluxRegFineAdd() 10 1.757e-06 2.49e-06 3.587e-06 0.00% Amr::init() 1 2.05e-06 2.172e-06 2.401e-06 0.00% Amr::initialInit() 1 1.287e-06 1.679e-06 2.012e-06 0.00% DistributionMapping::Distribute() 1 8.43e-07 1.157e-06 1.434e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.645 3.647 3.648 100.00% Amr::coarseTimeStep() 10 3.436 3.436 3.436 94.19% Amr::timeStep() 10 3.425 3.426 3.427 93.95% Castro::advance() 10 3.409 3.41 3.41 93.49% Castro::subcycle_advance_ctu() 10 3.338 3.341 3.352 91.88% Castro::do_advance_ctu() 10 3.338 3.341 3.352 91.87% Castro::construct_ctu_hydro_source() 10 2.114 2.409 2.513 68.87% Gravity::make_radial_gravity() 21 0.3394 0.353 0.3774 10.35% Gravity::get_new_grav_vector() 11 0.2273 0.2325 0.2342 6.42% Castro::construct_old_gravity() 10 0.1988 0.2103 0.2285 6.26% Gravity::get_old_grav_vector() 10 0.1979 0.2096 0.2279 6.25% FillPatchIterator::Initialize 41 0.1855 0.195 0.2204 6.04% Castro::construct_new_gravity() 10 0.2005 0.2052 0.2064 5.66% Amr::init() 1 0.1936 0.1938 0.194 5.32% FillPatchSingleLevel 41 0.1342 0.1487 0.1911 5.24% Castro::initialize_do_advance() 10 0.1639 0.1774 0.1847 5.06% Amr::initialInit() 1 0.1778 0.1781 0.1784 4.89% FabArray::ParallelCopy() 41 0.09136 0.1067 0.1527 4.19% Amr::InitializeInit() 1 0.0737 0.1053 0.1475 4.04% Amr::defBaseLevel() 1 0.07369 0.1053 0.1475 4.04% Castro::expand_state() 10 0.1203 0.1298 0.1351 3.70% FabArray::ParallelCopy_finish() 41 0.04205 0.06192 0.1247 3.42% Castro::initData() 1 0.05096 0.08583 0.1246 3.42% Castro::clean_state() 62 0.1097 0.1167 0.1203 3.30% Castro::estTimeStep() 21 0.02579 0.07097 0.1093 3.00% Amr::FinalizeInit() 1 0.03054 0.07284 0.1041 2.85% Castro::computeInitialDt() 2 0.001704 0.04396 0.07527 2.06% Castro::computeTemp() 63 0.06263 0.06907 0.07319 2.01% Castro::initialize_advance() 10 0.05768 0.06901 0.07202 1.97% FabArray::setVal() 143 0.05731 0.06777 0.07033 1.93% Castro::do_new_sources() 10 0.05311 0.06317 0.06525 1.79% Castro::reset_internal_energy(MultiFab) 63 0.04557 0.05024 0.05313 1.46% Castro::reset_internal_energy(Fab) 1008 0.04526 0.04992 0.05282 1.45% FabArray::ParallelCopy_nowait() 41 0.02796 0.0447 0.05033 1.38% Castro::do_old_sources() 10 0.03285 0.04525 0.04896 1.34% StateDataPhysBCFunct::() 41 0.03644 0.04191 0.04639 1.27% StateData::FillBoundary(geom) 41 0.03633 0.04179 0.04626 1.27% Castro::normalize_species() 62 0.03991 0.04169 0.04275 1.17% Castro::construct_new_source() 50 0.02472 0.02952 0.03095 0.85% Castro::post_init() 1 0.02717 0.02809 0.02847 0.78% Gravity::interpolate_monopole_grav() 21 0.02609 0.02747 0.02802 0.77% Amr::writePlotFile() 2 0.02601 0.0262 0.02642 0.72% Castro::construct_new_gravity_source() 10 0.01989 0.02297 0.02397 0.66% Castro::post_timestep() 10 0.01452 0.01583 0.01666 0.46% VisMF::Write(FabArray) 2 0.01276 0.01363 0.01628 0.45% Castro::apply_source_to_state() 20 0.008706 0.01437 0.0161 0.44% MultiFab::Saxpy() 20 0.008671 0.01432 0.01603 0.44% Castro::Castro() 1 0.01012 0.01234 0.01459 0.40% Castro::check_for_nan() 20 0.009721 0.01131 0.0125 0.34% MultiFab::contains_nan() 20 0.009695 0.01128 0.01246 0.34% FabArray::setDomainBndry() 41 0.004872 0.0103 0.01224 0.34% Castro::construct_old_source() 50 0.005046 0.01019 0.01174 0.32% Castro::construct_old_gravity_source() 10 0.005002 0.01011 0.01165 0.32% Castro::initMFs() 1 0.006542 0.008235 0.009955 0.27% AmrLevel::AmrLevel(dm) 1 0.005468 0.006786 0.008112 0.22% StateData::define() 4 0.005458 0.006774 0.008099 0.22% Castro::computeNewDt() 9 0.007126 0.007155 0.007172 0.20% Castro::enforce_min_density() 62 0.006048 0.006667 0.007119 0.20% Castro::swap_state_time_levels() 10 0.003296 0.004345 0.004592 0.13% Castro::buildMetrics() 1 0.001655 0.002093 0.00253 0.07% Castro::post_regrid() 1 0.001512 0.001691 0.002513 0.07% Castro::finalize_do_advance() 10 0.000646 0.001438 0.001669 0.05% Amr::InitAmr() 1 0.0002696 0.0003963 0.0006255 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.343e-05 0.000285 0.0004387 0.01% DistributionMapping::LeastUsedCPUs() 1 8.071e-06 0.0002794 0.0004323 0.01% Castro::enforce_consistent_e() 1 8.295e-05 9.014e-05 9.966e-05 0.00% FabArrayBase::getCPC() 41 7.077e-05 8.339e-05 9.489e-05 0.00% Amr::writeSmallPlotFile() 1 2.481e-05 4.823e-05 7.177e-05 0.00% Castro::finalize_advance() 10 5.832e-05 6.363e-05 6.82e-05 0.00% Castro::enforce_speed_limit() 62 2.487e-05 3.074e-05 3.937e-05 0.00% FabArrayBase::CPC::define() 2 2.192e-05 2.521e-05 2.969e-05 0.00% Gravity::swapTimeLevels() 10 5.238e-06 1.329e-05 1.702e-05 0.00% Amr::initSubcycle() 1 7.918e-06 1.092e-05 1.425e-05 0.00% Castro::create_source_corrector() 10 5.2e-06 1.024e-05 1.343e-05 0.00% Gravity::set_mass_offset() 10 6.959e-06 9.746e-06 1.227e-05 0.00% Castro::FluxRegCrseInit 10 6.109e-06 8.303e-06 9.525e-06 0.00% Castro::retry_advance_ctu() 10 3.803e-06 5.901e-06 7.147e-06 0.00% Castro::FluxRegFineAdd() 10 1.757e-06 2.49e-06 3.587e-06 0.00% DistributionMapping::Distribute() 1 8.43e-07 1.157e-06 1.434e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.09-18-g3e5cc7780280) finalized