MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.09-23-g5e84f43241ed) initialized Starting run at 05:39:23 UTC on 2022-09-26. Successfully read inputs file ... Castro git describe: 22.09 AMReX git describe: 22.09-23-g5e84f4324 Microphysics git describe: 22.09-11-g1c7ce889 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.018929022 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.365252203 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.350694393 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.349124019 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.349473083 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.359811001 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.36280029 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.338713785 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.338354446 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.339705762 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.339167844 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.087962832 seconds Ending run at 05:39:27 UTC on 2022-09-26. Run time = 3.800936226 Run time without initialization = 3.589332403 Average number of zones advanced per microsecond: 0.730 Average number of zones advanced per microsecond per rank: 0.091 TinyProfiler total time across processes [min...avg...max]: 3.798 ... 3.8 ... 3.801 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1980 2.3934 2.5665 67.52% Castro::do_advance_ctu() 10 0.02342 0.1975 0.3971 10.45% Gravity::make_radial_gravity() 21 0.3585 0.3717 0.393 10.34% Castro::initData() 1 0.04118 0.09019 0.1248 3.28% Castro::estTimeStep() 21 0.02875 0.0652 0.1204 3.17% FabArray::ParallelCopy_finish() 41 0.04283 0.06042 0.1138 2.99% Amr::writePlotFile() 2 0.08718 0.09143 0.09348 2.46% FabArray::setVal() 143 0.0582 0.06835 0.07452 1.96% Castro::reset_internal_energy(Fab) 1008 0.04832 0.0507 0.05277 1.39% FabArray::ParallelCopy_nowait() 41 0.02996 0.04419 0.04932 1.30% StateData::FillBoundary(geom) 41 0.03605 0.04276 0.04768 1.25% Castro::normalize_species() 62 0.04112 0.04205 0.0441 1.16% FillPatchIterator::Initialize 41 0.02531 0.03651 0.04078 1.07% Gravity::interpolate_monopole_grav() 21 0.02655 0.02768 0.02853 0.75% Castro::construct_new_gravity_source() 10 0.02217 0.0239 0.02845 0.75% Castro::expand_state() 10 0.01086 0.01874 0.02262 0.60% Castro::computeTemp() 63 0.01754 0.01933 0.02056 0.54% VisMF::Write(FabArray) 2 0.01313 0.01441 0.01991 0.52% Castro::initialize_do_advance() 10 0.01022 0.01753 0.01924 0.51% MultiFab::Saxpy() 20 0.008788 0.01392 0.0161 0.42% Gravity::get_new_grav_vector() 11 0.007512 0.0114 0.01387 0.36% FabArray::setDomainBndry() 41 0.005152 0.01021 0.01215 0.32% MultiFab::contains_nan() 20 0.009626 0.01092 0.01214 0.32% Castro::construct_old_gravity_source() 10 0.005014 0.01012 0.01195 0.31% Gravity::get_old_grav_vector() 10 0.005795 0.009431 0.01178 0.31% Castro::initialize_advance() 10 0.007817 0.0105 0.01129 0.30% Castro::initMFs() 1 0.006632 0.008491 0.009876 0.26% StateData::define() 4 0.005561 0.00715 0.008214 0.22% main() 1 0.004425 0.006896 0.007562 0.20% Castro::construct_new_source() 50 0.00522 0.006483 0.007251 0.19% Castro::enforce_min_density() 62 0.005657 0.006151 0.006648 0.17% Castro::swap_state_time_levels() 10 0.003277 0.004361 0.004606 0.12% Amr::coarseTimeStep() 10 0.001393 0.002261 0.002929 0.08% Castro::buildMetrics() 1 0.001591 0.002035 0.002365 0.06% Castro::finalize_do_advance() 10 0.0006527 0.001393 0.001722 0.05% Amr::InitAmr() 1 0.0002656 0.0004106 0.000496 0.01% Amr::timeStep() 10 0.0001749 0.0002325 0.0004399 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0003028 0.0003254 0.000362 0.01% DistributionMapping::LeastUsedCPUs() 1 7.289e-06 0.0001138 0.0002941 0.01% Castro::clean_state() 62 0.0001616 0.0001755 0.0001954 0.01% Castro::enforce_consistent_e() 1 7.629e-05 9.683e-05 0.0001424 0.00% StateDataPhysBCFunct::() 41 0.0001096 0.0001225 0.0001325 0.00% Castro::do_new_sources() 10 5.214e-05 7.513e-05 0.0001097 0.00% FabArray::ParallelCopy() 41 7.863e-05 8.612e-05 9.329e-05 0.00% Castro::construct_old_source() 50 4.533e-05 7.451e-05 9.162e-05 0.00% Castro::do_old_sources() 10 4.686e-05 7.258e-05 9.069e-05 0.00% Castro::Castro() 1 4.717e-05 6.732e-05 8.563e-05 0.00% FillPatchSingleLevel 41 6.723e-05 7.209e-05 7.704e-05 0.00% Amr::writeSmallPlotFile() 1 3.108e-05 6.038e-05 7.656e-05 0.00% Castro::subcycle_advance_ctu() 10 4.407e-05 5.516e-05 7.276e-05 0.00% Castro::advance() 10 3.441e-05 4.759e-05 7.21e-05 0.00% Castro::construct_old_gravity() 10 4.246e-05 5.608e-05 6.934e-05 0.00% Castro::apply_source_to_state() 20 3.955e-05 5.339e-05 6.465e-05 0.00% Amr::FinalizeInit() 1 3.253e-06 1.165e-05 6.286e-05 0.00% Castro::finalize_advance() 10 5.21e-05 5.697e-05 6.099e-05 0.00% FabArrayBase::getCPC() 41 4.72e-05 5.293e-05 5.863e-05 0.00% Castro::construct_new_gravity() 10 4.122e-05 4.585e-05 4.869e-05 0.00% FabArrayBase::CPC::define() 2 2.241e-05 2.779e-05 3.462e-05 0.00% Castro::enforce_speed_limit() 62 2.519e-05 2.817e-05 3.251e-05 0.00% Amr::defBaseLevel() 1 2.38e-05 2.642e-05 2.91e-05 0.00% Castro::check_for_nan() 20 2.166e-05 2.534e-05 2.79e-05 0.00% Castro::post_timestep() 10 1.207e-05 1.867e-05 2.613e-05 0.00% Gravity::swapTimeLevels() 10 7.461e-06 1.165e-05 1.531e-05 0.00% Castro::create_source_corrector() 10 7.046e-06 1.105e-05 1.511e-05 0.00% Amr::initSubcycle() 1 8.372e-06 1.17e-05 1.508e-05 0.00% AmrLevel::AmrLevel(dm) 1 9.007e-06 1.209e-05 1.406e-05 0.00% Castro::FluxRegCrseInit 10 5.594e-06 9.119e-06 1.083e-05 0.00% Castro::computeNewDt() 9 8.196e-06 9.427e-06 1.082e-05 0.00% Gravity::set_mass_offset() 10 7.9e-06 9.252e-06 1.03e-05 0.00% Castro::post_init() 1 2.872e-06 4.671e-06 9.485e-06 0.00% Castro::retry_advance_ctu() 10 4.307e-06 5.736e-06 7.388e-06 0.00% Amr::InitializeInit() 1 2.246e-06 2.983e-06 5.452e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.016e-06 4.693e-06 5.199e-06 0.00% Castro::post_regrid() 1 1.616e-06 2.819e-06 4.607e-06 0.00% Castro::computeInitialDt() 2 3.066e-06 3.7e-06 4.433e-06 0.00% Castro::FluxRegFineAdd() 10 1.986e-06 2.454e-06 3.005e-06 0.00% Amr::init() 1 1.77e-06 2.131e-06 2.389e-06 0.00% Amr::initialInit() 1 1.314e-06 1.419e-06 1.562e-06 0.00% DistributionMapping::Distribute() 1 1.122e-06 1.259e-06 1.327e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.798 3.8 3.801 100.00% Amr::coarseTimeStep() 10 3.494 3.494 3.494 91.92% Amr::timeStep() 10 3.482 3.483 3.484 91.66% Castro::advance() 10 3.466 3.467 3.467 91.22% Castro::subcycle_advance_ctu() 10 3.392 3.395 3.403 89.52% Castro::do_advance_ctu() 10 3.392 3.395 3.403 89.52% Castro::construct_ctu_hydro_source() 10 2.198 2.393 2.567 67.52% Gravity::make_radial_gravity() 21 0.3585 0.3717 0.393 10.34% Gravity::get_new_grav_vector() 11 0.2378 0.2419 0.2446 6.44% Castro::construct_old_gravity() 10 0.2096 0.2209 0.2379 6.26% Gravity::get_old_grav_vector() 10 0.2087 0.2202 0.2372 6.24% FillPatchIterator::Initialize 41 0.184 0.1945 0.2157 5.68% Amr::init() 1 0.2109 0.211 0.2112 5.56% Castro::construct_new_gravity() 10 0.2004 0.2028 0.2054 5.40% Amr::initialInit() 1 0.1919 0.1932 0.1941 5.11% FillPatchSingleLevel 41 0.1325 0.1477 0.1853 4.87% Castro::initialize_do_advance() 10 0.1666 0.177 0.1842 4.85% Amr::InitializeInit() 1 0.06079 0.114 0.1505 3.96% Amr::defBaseLevel() 1 0.06078 0.114 0.1505 3.96% FabArray::ParallelCopy() 41 0.09094 0.1048 0.144 3.79% Castro::expand_state() 10 0.121 0.1287 0.1356 3.57% Amr::FinalizeInit() 1 0.04246 0.07921 0.1311 3.45% Castro::initData() 1 0.04477 0.09429 0.1285 3.38% Castro::clean_state() 62 0.1131 0.1177 0.123 3.24% Castro::estTimeStep() 21 0.02875 0.0652 0.1204 3.17% FabArray::ParallelCopy_finish() 41 0.04283 0.06042 0.1138 2.99% Amr::writePlotFile() 2 0.1049 0.1058 0.1071 2.82% Castro::computeInitialDt() 2 0.001718 0.03833 0.0915 2.41% Castro::initialize_advance() 10 0.06407 0.0718 0.07523 1.98% FabArray::setVal() 143 0.0582 0.06835 0.07452 1.96% Castro::computeTemp() 63 0.0663 0.07036 0.07367 1.94% Castro::do_new_sources() 10 0.05838 0.06378 0.06958 1.83% Castro::reset_internal_energy(MultiFab) 63 0.04864 0.05103 0.05311 1.40% Castro::reset_internal_energy(Fab) 1008 0.04832 0.0507 0.05277 1.39% FabArray::ParallelCopy_nowait() 41 0.03004 0.04427 0.04939 1.30% Castro::do_old_sources() 10 0.03334 0.04538 0.04892 1.29% StateDataPhysBCFunct::() 41 0.03616 0.04288 0.0478 1.26% StateData::FillBoundary(geom) 41 0.03605 0.04276 0.04768 1.25% Castro::normalize_species() 62 0.04112 0.04205 0.0441 1.16% Castro::post_init() 1 0.03894 0.03989 0.04051 1.07% Castro::construct_new_source() 50 0.02748 0.03038 0.0357 0.94% Gravity::interpolate_monopole_grav() 21 0.02655 0.02768 0.02853 0.75% Castro::construct_new_gravity_source() 10 0.02217 0.0239 0.02845 0.75% VisMF::Write(FabArray) 2 0.01313 0.01441 0.01991 0.52% Castro::post_timestep() 10 0.01531 0.01602 0.01705 0.45% Castro::apply_source_to_state() 20 0.008828 0.01398 0.01616 0.43% MultiFab::Saxpy() 20 0.008788 0.01392 0.0161 0.42% Castro::Castro() 1 0.009547 0.0124 0.01454 0.38% Castro::check_for_nan() 20 0.009649 0.01095 0.01217 0.32% FabArray::setDomainBndry() 41 0.005152 0.01021 0.01215 0.32% MultiFab::contains_nan() 20 0.009626 0.01092 0.01214 0.32% Castro::construct_old_source() 50 0.005059 0.01019 0.01203 0.32% Castro::construct_old_gravity_source() 10 0.005014 0.01012 0.01195 0.31% Castro::initMFs() 1 0.006632 0.008491 0.009876 0.26% AmrLevel::AmrLevel(dm) 1 0.00557 0.007162 0.008226 0.22% StateData::define() 4 0.005561 0.00715 0.008214 0.22% Castro::computeNewDt() 9 0.007485 0.007497 0.007502 0.20% Castro::enforce_min_density() 62 0.005657 0.006151 0.006648 0.17% Castro::swap_state_time_levels() 10 0.003277 0.004361 0.004606 0.12% Castro::post_regrid() 1 0.001538 0.001902 0.002922 0.08% Castro::buildMetrics() 1 0.001704 0.002204 0.002586 0.07% Castro::finalize_do_advance() 10 0.0006527 0.001393 0.001722 0.05% Amr::InitAmr() 1 0.0002739 0.0004223 0.0005092 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.329e-05 0.0001198 0.0003005 0.01% DistributionMapping::LeastUsedCPUs() 1 7.289e-06 0.0001138 0.0002941 0.01% Castro::enforce_consistent_e() 1 7.629e-05 9.683e-05 0.0001424 0.00% FabArrayBase::getCPC() 41 7.216e-05 8.072e-05 9.058e-05 0.00% Amr::writeSmallPlotFile() 1 3.108e-05 6.038e-05 7.656e-05 0.00% Castro::finalize_advance() 10 6.481e-05 6.854e-05 7.311e-05 0.00% FabArrayBase::CPC::define() 2 2.241e-05 2.779e-05 3.462e-05 0.00% Castro::enforce_speed_limit() 62 2.519e-05 2.817e-05 3.251e-05 0.00% Gravity::swapTimeLevels() 10 7.461e-06 1.165e-05 1.531e-05 0.00% Castro::create_source_corrector() 10 7.046e-06 1.105e-05 1.511e-05 0.00% Amr::initSubcycle() 1 8.372e-06 1.17e-05 1.508e-05 0.00% Castro::FluxRegCrseInit 10 5.594e-06 9.119e-06 1.083e-05 0.00% Gravity::set_mass_offset() 10 7.9e-06 9.252e-06 1.03e-05 0.00% Castro::retry_advance_ctu() 10 4.307e-06 5.736e-06 7.388e-06 0.00% Castro::FluxRegFineAdd() 10 1.986e-06 2.454e-06 3.005e-06 0.00% DistributionMapping::Distribute() 1 1.122e-06 1.259e-06 1.327e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.09-23-g5e84f43241ed) finalized