MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.10-3-g1bc4e4eb5a25) initialized Starting run at 05:39:37 UTC on 2022-10-04. Successfully read inputs file ... Castro git describe: 22.09-1-g65b273ad0 AMReX git describe: 22.10-3-g1bc4e4eb5 Microphysics git describe: 22.10-2-gbaa4f033 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.018422869 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.370442551 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.349231045 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.345779633 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.344060959 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.35184969 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.349368723 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.339228623 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.340388638 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.339762104 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.339531634 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010530275 seconds Ending run at 05:39:41 UTC on 2022-10-04. Run time = 3.692561711 Run time without initialization = 3.488160366 Average number of zones advanced per microsecond: 0.752 Average number of zones advanced per microsecond per rank: 0.094 TinyProfiler total time across processes [min...avg...max]: 3.69 ... 3.692 ... 3.693 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1763 2.4326 2.5239 68.35% Castro::do_advance_ctu() 10 0.05155 0.1432 0.4021 10.89% Gravity::make_radial_gravity() 21 0.3401 0.3541 0.3761 10.18% Castro::estTimeStep() 21 0.02916 0.07872 0.1372 3.72% Castro::initData() 1 0.0393 0.08504 0.1313 3.56% FabArray::ParallelCopy_finish() 41 0.04085 0.06061 0.1193 3.23% FabArray::setVal() 143 0.0574 0.06777 0.07119 1.93% Castro::reset_internal_energy(Fab) 1008 0.04649 0.05022 0.05236 1.42% FabArray::ParallelCopy_nowait() 41 0.02984 0.04496 0.05014 1.36% StateData::FillBoundary(geom) 41 0.03673 0.04269 0.04713 1.28% Castro::normalize_species() 62 0.04005 0.0414 0.04288 1.16% FillPatchIterator::Initialize 41 0.02481 0.036 0.0401 1.09% Gravity::interpolate_monopole_grav() 21 0.02682 0.02749 0.02778 0.75% Castro::construct_new_gravity_source() 10 0.01963 0.02267 0.02354 0.64% Castro::expand_state() 10 0.009868 0.01779 0.02206 0.60% Castro::computeTemp() 63 0.01759 0.0191 0.01997 0.54% Castro::initialize_do_advance() 10 0.01025 0.01745 0.01987 0.54% VisMF::Write(FabArray) 2 0.01324 0.01402 0.01666 0.45% MultiFab::Saxpy() 20 0.008765 0.01437 0.01636 0.44% Amr::writePlotFile() 2 0.01253 0.01364 0.01481 0.40% Gravity::get_new_grav_vector() 11 0.007722 0.01149 0.01307 0.35% FabArray::setDomainBndry() 41 0.005055 0.01042 0.0124 0.34% MultiFab::contains_nan() 20 0.009491 0.0111 0.01232 0.33% Castro::construct_old_gravity_source() 10 0.00494 0.01013 0.01189 0.32% Castro::initialize_advance() 10 0.008827 0.01046 0.01163 0.31% Gravity::get_old_grav_vector() 10 0.005798 0.009249 0.01071 0.29% Castro::initMFs() 1 0.006696 0.007859 0.01021 0.28% StateData::define() 4 0.005556 0.006405 0.008134 0.22% main() 1 0.004474 0.006709 0.007371 0.20% Castro::construct_new_source() 50 0.004914 0.006529 0.007193 0.19% Castro::enforce_min_density() 62 0.005297 0.00611 0.00677 0.18% Castro::swap_state_time_levels() 10 0.003324 0.004397 0.004645 0.13% Amr::coarseTimeStep() 10 0.0008446 0.001424 0.002847 0.08% Castro::buildMetrics() 1 0.00157 0.001835 0.002335 0.06% Castro::finalize_do_advance() 10 0.0006509 0.00143 0.001674 0.05% Amr::InitAmr() 1 0.0002977 0.0003805 0.0005319 0.01% Amr::timeStep() 10 0.0001661 0.0002111 0.0003733 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0003027 0.0003153 0.0003296 0.01% DistributionMapping::LeastUsedCPUs() 1 7.972e-06 0.0001855 0.000282 0.01% Castro::clean_state() 62 0.0001516 0.0001663 0.000193 0.01% StateDataPhysBCFunct::() 41 0.0001001 0.0001234 0.0001418 0.00% Castro::Castro() 1 5.377e-05 7.074e-05 0.0001177 0.00% FabArray::ParallelCopy() 41 7.187e-05 8.504e-05 0.0001063 0.00% Castro::enforce_consistent_e() 1 7.866e-05 8.852e-05 0.0001028 0.00% Castro::do_new_sources() 10 4.336e-05 7.314e-05 9.466e-05 0.00% Castro::construct_old_source() 50 3.511e-05 7.78e-05 9.4e-05 0.00% FillPatchSingleLevel 41 6.485e-05 7.271e-05 8.548e-05 0.00% Castro::do_old_sources() 10 3.753e-05 6.949e-05 8.327e-05 0.00% Castro::advance() 10 3.807e-05 5.22e-05 7.687e-05 0.00% Amr::writeSmallPlotFile() 1 2.471e-05 4.77e-05 7.105e-05 0.00% Castro::subcycle_advance_ctu() 10 4.87e-05 5.494e-05 6.95e-05 0.00% FabArrayBase::getCPC() 41 5.224e-05 5.795e-05 6.781e-05 0.00% Castro::construct_old_gravity() 10 3.624e-05 5.392e-05 6.76e-05 0.00% Castro::apply_source_to_state() 20 4.334e-05 5.62e-05 6.637e-05 0.00% Castro::construct_new_gravity() 10 3.527e-05 4.471e-05 6.508e-05 0.00% Amr::FinalizeInit() 1 3.61e-06 1.175e-05 6.311e-05 0.00% Castro::finalize_advance() 10 5.036e-05 5.267e-05 5.641e-05 0.00% FabArrayBase::CPC::define() 2 2.128e-05 2.838e-05 4.75e-05 0.00% Castro::enforce_speed_limit() 62 2.355e-05 2.907e-05 3.416e-05 0.00% Castro::post_timestep() 10 1.369e-05 1.962e-05 2.997e-05 0.00% Amr::defBaseLevel() 1 2.29e-05 2.628e-05 2.889e-05 0.00% Castro::check_for_nan() 20 2.195e-05 2.641e-05 2.857e-05 0.00% Amr::initSubcycle() 1 8.428e-06 1.246e-05 2.427e-05 0.00% Gravity::swapTimeLevels() 10 6.129e-06 1.324e-05 1.755e-05 0.00% Castro::create_source_corrector() 10 6.469e-06 1.094e-05 1.367e-05 0.00% AmrLevel::AmrLevel(dm) 1 7.719e-06 9.41e-06 1.356e-05 0.00% Castro::computeNewDt() 9 7.576e-06 1.022e-05 1.267e-05 0.00% Castro::FluxRegCrseInit 10 6.04e-06 9.428e-06 1.157e-05 0.00% Gravity::set_mass_offset() 10 7.649e-06 9.75e-06 1.105e-05 0.00% Castro::retry_advance_ctu() 10 4.102e-06 6.233e-06 8.703e-06 0.00% Amr::InitializeInit() 1 1.896e-06 3.344e-06 7.934e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.64e-06 4.763e-06 6.987e-06 0.00% Castro::computeInitialDt() 2 2.676e-06 3.636e-06 4.513e-06 0.00% Castro::post_init() 1 3.099e-06 3.708e-06 4.298e-06 0.00% Castro::post_regrid() 1 1.805e-06 2.821e-06 4.09e-06 0.00% Castro::FluxRegFineAdd() 10 1.806e-06 2.236e-06 3.131e-06 0.00% Amr::init() 1 1.736e-06 1.979e-06 2.283e-06 0.00% Amr::initialInit() 1 1.069e-06 1.334e-06 1.579e-06 0.00% DistributionMapping::Distribute() 1 9e-07 1.086e-06 1.34e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.69 3.692 3.693 100.00% Amr::coarseTimeStep() 10 3.47 3.47 3.47 93.98% Amr::timeStep() 10 3.459 3.461 3.461 93.74% Castro::advance() 10 3.444 3.445 3.445 93.30% Castro::subcycle_advance_ctu() 10 3.37 3.374 3.381 91.57% Castro::do_advance_ctu() 10 3.37 3.374 3.381 91.57% Castro::construct_ctu_hydro_source() 10 2.176 2.433 2.524 68.35% Gravity::make_radial_gravity() 21 0.3401 0.3541 0.3761 10.18% Gravity::get_new_grav_vector() 11 0.2298 0.2335 0.2356 6.38% Castro::construct_old_gravity() 10 0.1997 0.2118 0.2279 6.17% Gravity::get_old_grav_vector() 10 0.1989 0.2111 0.2273 6.16% FillPatchIterator::Initialize 41 0.1838 0.195 0.2188 5.93% Castro::construct_new_gravity() 10 0.2049 0.2072 0.2085 5.65% Amr::init() 1 0.2037 0.2039 0.204 5.52% FillPatchSingleLevel 41 0.133 0.1486 0.1888 5.11% Amr::initialInit() 1 0.1853 0.1868 0.1879 5.09% Castro::initialize_do_advance() 10 0.1674 0.176 0.184 4.98% Amr::InitializeInit() 1 0.05929 0.107 0.1572 4.26% Amr::defBaseLevel() 1 0.05929 0.107 0.1572 4.26% FabArray::ParallelCopy() 41 0.09035 0.1057 0.1493 4.04% Castro::estTimeStep() 21 0.02916 0.07872 0.1372 3.72% Castro::initData() 1 0.04303 0.08875 0.1349 3.65% Castro::expand_state() 10 0.1218 0.1278 0.1339 3.63% Amr::FinalizeInit() 1 0.02904 0.07985 0.1286 3.48% Castro::clean_state() 62 0.1102 0.1164 0.1193 3.23% FabArray::ParallelCopy_finish() 41 0.04085 0.06061 0.1193 3.23% Castro::computeInitialDt() 2 0.00161 0.05204 0.09981 2.70% Castro::initialize_advance() 10 0.06283 0.07114 0.07455 2.02% Castro::computeTemp() 63 0.06438 0.06963 0.07249 1.96% FabArray::setVal() 143 0.0574 0.06777 0.07119 1.93% Castro::do_new_sources() 10 0.05377 0.06291 0.06484 1.76% Castro::reset_internal_energy(MultiFab) 63 0.0468 0.05054 0.05267 1.43% Castro::reset_internal_energy(Fab) 1008 0.04649 0.05022 0.05236 1.42% FabArray::ParallelCopy_nowait() 41 0.02995 0.04504 0.05022 1.36% Castro::do_old_sources() 10 0.03312 0.04534 0.04886 1.32% StateDataPhysBCFunct::() 41 0.03685 0.04281 0.04726 1.28% StateData::FillBoundary(geom) 41 0.03673 0.04269 0.04713 1.28% Castro::normalize_species() 62 0.04005 0.0414 0.04288 1.16% Castro::construct_new_source() 50 0.02454 0.0292 0.0304 0.82% Amr::writePlotFile() 2 0.02671 0.02766 0.02919 0.79% Castro::post_init() 1 0.02561 0.02716 0.02808 0.76% Gravity::interpolate_monopole_grav() 21 0.02682 0.02749 0.02778 0.75% Castro::construct_new_gravity_source() 10 0.01963 0.02267 0.02354 0.64% VisMF::Write(FabArray) 2 0.01324 0.01402 0.01666 0.45% Castro::apply_source_to_state() 20 0.008809 0.01443 0.01642 0.44% MultiFab::Saxpy() 20 0.008765 0.01437 0.01636 0.44% Castro::post_timestep() 10 0.01511 0.01572 0.01616 0.44% Castro::Castro() 1 0.0103 0.01158 0.0143 0.39% FabArray::setDomainBndry() 41 0.005055 0.01042 0.0124 0.34% Castro::check_for_nan() 20 0.009515 0.01113 0.01235 0.33% MultiFab::contains_nan() 20 0.009491 0.0111 0.01232 0.33% Castro::construct_old_source() 50 0.004975 0.01021 0.01199 0.32% Castro::construct_old_gravity_source() 10 0.00494 0.01013 0.01189 0.32% Castro::initMFs() 1 0.006696 0.007859 0.01021 0.28% AmrLevel::AmrLevel(dm) 1 0.005564 0.006414 0.008147 0.22% StateData::define() 4 0.005556 0.006405 0.008134 0.22% Castro::computeNewDt() 9 0.007074 0.007083 0.007092 0.19% Castro::enforce_min_density() 62 0.005297 0.00611 0.00677 0.18% Castro::swap_state_time_levels() 10 0.003324 0.004397 0.004645 0.13% Castro::buildMetrics() 1 0.001689 0.00198 0.002549 0.07% Castro::finalize_do_advance() 10 0.0006509 0.00143 0.001674 0.05% Castro::post_regrid() 1 0.001503 0.00158 0.001616 0.04% Amr::InitAmr() 1 0.0003065 0.0003929 0.0005465 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.322e-05 0.0001913 0.0002884 0.01% DistributionMapping::LeastUsedCPUs() 1 7.972e-06 0.0001855 0.000282 0.01% FabArrayBase::getCPC() 41 7.72e-05 8.633e-05 0.0001153 0.00% Castro::enforce_consistent_e() 1 7.866e-05 8.852e-05 0.0001028 0.00% Amr::writeSmallPlotFile() 1 2.471e-05 4.77e-05 7.105e-05 0.00% Castro::finalize_advance() 10 5.894e-05 6.433e-05 6.965e-05 0.00% FabArrayBase::CPC::define() 2 2.128e-05 2.838e-05 4.75e-05 0.00% Castro::enforce_speed_limit() 62 2.355e-05 2.907e-05 3.416e-05 0.00% Amr::initSubcycle() 1 8.428e-06 1.246e-05 2.427e-05 0.00% Gravity::swapTimeLevels() 10 6.129e-06 1.324e-05 1.755e-05 0.00% Castro::create_source_corrector() 10 6.469e-06 1.094e-05 1.367e-05 0.00% Castro::FluxRegCrseInit 10 6.04e-06 9.428e-06 1.157e-05 0.00% Gravity::set_mass_offset() 10 7.649e-06 9.75e-06 1.105e-05 0.00% Castro::retry_advance_ctu() 10 4.102e-06 6.233e-06 8.703e-06 0.00% Castro::FluxRegFineAdd() 10 1.806e-06 2.236e-06 3.131e-06 0.00% DistributionMapping::Distribute() 1 9e-07 1.086e-06 1.34e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.10-3-g1bc4e4eb5a25) finalized