MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.10-24-g3ec07681574a) initialized Starting run at 05:39:46 UTC on 2022-10-28. Successfully read inputs file ... Castro git describe: 22.09-5-gb268a9470 AMReX git describe: 22.10-24-g3ec076815 Microphysics git describe: 22.10-5-g820f45d5 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016936343 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.35961344 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.345976848 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.343841298 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.344848456 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.356437082 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.352991429 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.338961603 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.341515024 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.340353759 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.340908313 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010483022 seconds Ending run at 05:39:50 UTC on 2022-10-28. Run time = 3.66501309 Run time without initialization = 3.483794344 Average number of zones advanced per microsecond: 0.752 Average number of zones advanced per microsecond per rank: 0.094 TinyProfiler total time across processes [min...avg...max]: 3.662 ... 3.664 ... 3.665 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1119 2.4207 2.5235 68.85% Castro::do_advance_ctu() 10 0.03823 0.1416 0.4536 12.38% Gravity::make_radial_gravity() 21 0.3379 0.3517 0.3799 10.36% FabArray::ParallelCopy_finish() 41 0.04083 0.0616 0.1195 3.26% Castro::initData() 1 0.03949 0.07846 0.1137 3.10% Castro::estTimeStep() 21 0.02823 0.06455 0.1071 2.92% FabArray::setVal() 143 0.0606 0.07063 0.07289 1.99% FabArray::ParallelCopy_nowait() 41 0.02747 0.0453 0.05136 1.40% Castro::reset_internal_energy(Fab) 1008 0.04692 0.05019 0.05122 1.40% StateData::FillBoundary(geom) 41 0.03421 0.04172 0.04625 1.26% Castro::normalize_species() 62 0.04073 0.04163 0.043 1.17% FillPatchIterator::Initialize 41 0.02446 0.03638 0.04063 1.11% Gravity::interpolate_monopole_grav() 21 0.02636 0.02749 0.0279 0.76% Castro::construct_new_gravity_source() 10 0.02017 0.02295 0.02397 0.65% Castro::expand_state() 10 0.009612 0.01853 0.02234 0.61% Castro::computeTemp() 63 0.01824 0.0193 0.01989 0.54% Castro::initialize_do_advance() 10 0.01013 0.01749 0.01913 0.52% VisMF::Write(FabArray) 2 0.01251 0.01379 0.01825 0.50% MultiFab::Saxpy() 20 0.0088 0.01437 0.01642 0.45% Amr::writePlotFile() 2 0.009439 0.01404 0.01548 0.42% Gravity::get_new_grav_vector() 11 0.007568 0.01148 0.01292 0.35% FabArray::setDomainBndry() 41 0.004737 0.01056 0.01255 0.34% MultiFab::contains_nan() 20 0.009845 0.01112 0.01227 0.33% Castro::initialize_advance() 10 0.01071 0.011 0.01188 0.32% Castro::construct_old_gravity_source() 10 0.005018 0.01006 0.01181 0.32% Gravity::get_old_grav_vector() 10 0.005363 0.009386 0.01093 0.30% Castro::initMFs() 1 0.006791 0.007143 0.009337 0.25% Castro::enforce_min_density() 62 0.006118 0.006791 0.007426 0.20% main() 1 0.004425 0.006595 0.007231 0.20% Castro::construct_new_source() 50 0.004742 0.006519 0.007104 0.19% StateData::define() 4 0.005623 0.00574 0.006445 0.18% Castro::swap_state_time_levels() 10 0.002605 0.004371 0.004639 0.13% Castro::finalize_advance() 10 0.003475 0.003561 0.003724 0.10% Amr::coarseTimeStep() 10 0.002042 0.002251 0.003057 0.08% Castro::buildMetrics() 1 0.001594 0.001642 0.001862 0.05% Castro::finalize_do_advance() 10 0.0006586 0.00146 0.001777 0.05% Amr::InitAmr() 1 0.000273 0.0003016 0.0004794 0.01% Amr::timeStep() 10 0.0001837 0.0002339 0.0004182 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002837 0.0002969 0.0003053 0.01% Castro::clean_state() 62 0.0001297 0.0001748 0.000231 0.01% DistributionMapping::LeastUsedCPUs() 1 8.575e-06 0.0001882 0.0002168 0.01% StateDataPhysBCFunct::() 41 8.182e-05 0.0001133 0.0001279 0.00% Castro::enforce_consistent_e() 1 8.037e-05 8.796e-05 9.363e-05 0.00% FabArray::ParallelCopy() 41 5.683e-05 7.836e-05 9.262e-05 0.00% Amr::FinalizeInit() 1 4.234e-06 1.574e-05 9.121e-05 0.00% Castro::construct_old_source() 50 3.032e-05 6.972e-05 8.716e-05 0.00% Castro::do_new_sources() 10 3.864e-05 6.822e-05 8.59e-05 0.00% Castro::do_old_sources() 10 3.406e-05 6.729e-05 8.224e-05 0.00% Castro::Castro() 1 6.063e-05 6.905e-05 8.192e-05 0.00% Amr::writeSmallPlotFile() 1 2.411e-05 5.529e-05 7.469e-05 0.00% Castro::subcycle_advance_ctu() 10 3.029e-05 5.791e-05 7.363e-05 0.00% FillPatchSingleLevel 41 5.026e-05 6.26e-05 7.167e-05 0.00% Castro::construct_old_gravity() 10 3.053e-05 4.999e-05 6.238e-05 0.00% FabArrayBase::getCPC() 41 3.717e-05 4.776e-05 5.827e-05 0.00% Castro::advance() 10 2.812e-05 4.355e-05 5.623e-05 0.00% Castro::apply_source_to_state() 20 2.486e-05 4.513e-05 5.428e-05 0.00% Amr::defBaseLevel() 1 2.02e-05 3.23e-05 4.978e-05 0.00% Castro::construct_new_gravity() 10 3.238e-05 4.319e-05 4.958e-05 0.00% FabArrayBase::CPC::define() 2 2.106e-05 2.587e-05 3.226e-05 0.00% Castro::post_timestep() 10 1.386e-05 2.454e-05 3.106e-05 0.00% AmrLevel::AmrLevel(dm) 1 2.029e-05 2.52e-05 3.009e-05 0.00% Castro::enforce_speed_limit() 62 1.961e-05 2.567e-05 2.934e-05 0.00% Castro::check_for_nan() 20 1.944e-05 2.502e-05 2.9e-05 0.00% Gravity::swapTimeLevels() 10 5.53e-06 1.129e-05 1.378e-05 0.00% Castro::create_source_corrector() 10 7.41e-06 1.086e-05 1.289e-05 0.00% Gravity::set_mass_offset() 10 6.671e-06 9.198e-06 1.135e-05 0.00% Castro::computeNewDt() 9 7.236e-06 9.273e-06 1.078e-05 0.00% Castro::post_init() 1 2.642e-06 5.454e-06 1.071e-05 0.00% Castro::FluxRegCrseInit 10 5.462e-06 8.513e-06 1.026e-05 0.00% Amr::initSubcycle() 1 8.305e-06 8.965e-06 9.713e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.708e-06 5.22e-06 8.944e-06 0.00% Amr::InitializeInit() 1 1.886e-06 4.201e-06 8.466e-06 0.00% Castro::retry_advance_ctu() 10 4.049e-06 6.317e-06 7.669e-06 0.00% Castro::computeInitialDt() 2 3.205e-06 4.066e-06 5.329e-06 0.00% Castro::post_regrid() 1 1.752e-06 2.635e-06 3.907e-06 0.00% Amr::init() 1 1.707e-06 2.272e-06 3.053e-06 0.00% Castro::FluxRegFineAdd() 10 1.817e-06 2.257e-06 2.642e-06 0.00% Amr::initialInit() 1 1.352e-06 1.689e-06 2.269e-06 0.00% DistributionMapping::Distribute() 1 9.02e-07 1.156e-06 1.491e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.662 3.664 3.665 100.00% Amr::coarseTimeStep() 10 3.466 3.466 3.466 94.57% Amr::timeStep() 10 3.455 3.456 3.456 94.30% Castro::advance() 10 3.439 3.439 3.44 93.85% Castro::subcycle_advance_ctu() 10 3.361 3.363 3.366 91.85% Castro::do_advance_ctu() 10 3.361 3.363 3.366 91.85% Castro::construct_ctu_hydro_source() 10 2.112 2.421 2.523 68.85% Gravity::make_radial_gravity() 21 0.3379 0.3517 0.3799 10.36% Gravity::get_new_grav_vector() 11 0.2249 0.2304 0.2329 6.35% Castro::construct_old_gravity() 10 0.1991 0.2118 0.2327 6.35% Gravity::get_old_grav_vector() 10 0.1982 0.211 0.2322 6.34% FillPatchIterator::Initialize 41 0.1854 0.1959 0.2106 5.75% Castro::construct_new_gravity() 10 0.2006 0.205 0.2071 5.65% Castro::initialize_do_advance() 10 0.1617 0.1785 0.1882 5.14% FillPatchSingleLevel 41 0.133 0.1489 0.1814 4.95% Amr::init() 1 0.1806 0.1808 0.1808 4.93% Amr::initialInit() 1 0.1633 0.1635 0.1637 4.47% FabArray::ParallelCopy() 41 0.08997 0.107 0.1471 4.01% Castro::expand_state() 10 0.1216 0.1305 0.1389 3.79% Amr::InitializeInit() 1 0.06098 0.1 0.135 3.68% Amr::defBaseLevel() 1 0.06098 0.1 0.135 3.68% Castro::clean_state() 62 0.1115 0.1175 0.1202 3.28% FabArray::ParallelCopy_finish() 41 0.04083 0.0616 0.1195 3.26% Castro::initData() 1 0.04354 0.08247 0.1177 3.21% Castro::estTimeStep() 21 0.02823 0.06455 0.1071 2.92% Amr::FinalizeInit() 1 0.02833 0.06347 0.1026 2.80% Castro::computeInitialDt() 2 0.001706 0.0367 0.07576 2.07% Castro::initialize_advance() 10 0.06873 0.07321 0.07473 2.04% FabArray::setVal() 143 0.0606 0.07063 0.07289 1.99% Castro::computeTemp() 63 0.06545 0.06979 0.07098 1.94% Castro::do_new_sources() 10 0.05438 0.06338 0.06513 1.78% Castro::reset_internal_energy(MultiFab) 63 0.04721 0.05049 0.05151 1.41% FabArray::ParallelCopy_nowait() 41 0.02754 0.04537 0.05144 1.40% Castro::reset_internal_energy(Fab) 1008 0.04692 0.05019 0.05122 1.40% Castro::do_old_sources() 10 0.03251 0.0453 0.04919 1.34% StateDataPhysBCFunct::() 41 0.03429 0.04184 0.04638 1.27% StateData::FillBoundary(geom) 41 0.03421 0.04172 0.04625 1.26% Castro::normalize_species() 62 0.04073 0.04163 0.043 1.17% Castro::construct_new_source() 50 0.02491 0.02947 0.03067 0.84% Amr::writePlotFile() 2 0.02769 0.02783 0.02806 0.77% Gravity::interpolate_monopole_grav() 21 0.02636 0.02749 0.0279 0.76% Castro::post_init() 1 0.02603 0.02621 0.02632 0.72% Castro::construct_new_gravity_source() 10 0.02017 0.02295 0.02397 0.65% VisMF::Write(FabArray) 2 0.01251 0.01379 0.01825 0.50% Castro::post_timestep() 10 0.01592 0.01618 0.01655 0.45% Castro::apply_source_to_state() 20 0.008825 0.01442 0.01647 0.45% MultiFab::Saxpy() 20 0.0088 0.01437 0.01642 0.45% Castro::Castro() 1 0.01138 0.01156 0.01256 0.34% FabArray::setDomainBndry() 41 0.004737 0.01056 0.01255 0.34% Castro::check_for_nan() 20 0.009868 0.01114 0.01229 0.34% MultiFab::contains_nan() 20 0.009845 0.01112 0.01227 0.33% Castro::construct_old_source() 50 0.005049 0.01013 0.0119 0.32% Castro::construct_old_gravity_source() 10 0.005018 0.01006 0.01181 0.32% Castro::initMFs() 1 0.006791 0.007143 0.009337 0.25% Castro::enforce_min_density() 62 0.006118 0.006791 0.007426 0.20% Castro::computeNewDt() 9 0.007019 0.007029 0.00704 0.19% AmrLevel::AmrLevel(dm) 1 0.005647 0.005765 0.006475 0.18% StateData::define() 4 0.005623 0.00574 0.006445 0.18% Castro::swap_state_time_levels() 10 0.002605 0.004371 0.004639 0.13% Castro::finalize_advance() 10 0.003487 0.003571 0.003732 0.10% Castro::buildMetrics() 1 0.001734 0.001779 0.002019 0.06% Castro::finalize_do_advance() 10 0.0006586 0.00146 0.001777 0.05% Castro::post_regrid() 1 0.001512 0.001588 0.001649 0.05% Amr::InitAmr() 1 0.0002824 0.0003105 0.0004892 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.357e-05 0.0001946 0.0002242 0.01% DistributionMapping::LeastUsedCPUs() 1 8.575e-06 0.0001882 0.0002168 0.01% Castro::enforce_consistent_e() 1 8.037e-05 8.796e-05 9.363e-05 0.00% FabArrayBase::getCPC() 41 6.52e-05 7.363e-05 8.371e-05 0.00% Amr::writeSmallPlotFile() 1 2.411e-05 5.529e-05 7.469e-05 0.00% FabArrayBase::CPC::define() 2 2.106e-05 2.587e-05 3.226e-05 0.00% Castro::enforce_speed_limit() 62 1.961e-05 2.567e-05 2.934e-05 0.00% Gravity::swapTimeLevels() 10 5.53e-06 1.129e-05 1.378e-05 0.00% Castro::create_source_corrector() 10 7.41e-06 1.086e-05 1.289e-05 0.00% Gravity::set_mass_offset() 10 6.671e-06 9.198e-06 1.135e-05 0.00% Castro::FluxRegCrseInit 10 5.462e-06 8.513e-06 1.026e-05 0.00% Amr::initSubcycle() 1 8.305e-06 8.965e-06 9.713e-06 0.00% Castro::retry_advance_ctu() 10 4.049e-06 6.317e-06 7.669e-06 0.00% Castro::FluxRegFineAdd() 10 1.817e-06 2.257e-06 2.642e-06 0.00% DistributionMapping::Distribute() 1 9.02e-07 1.156e-06 1.491e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.10-24-g3ec07681574a) finalized