MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.10-25-g75da8d5b782d) initialized Starting run at 17:05:11 UTC on 2022-10-29. Successfully read inputs file ... Castro git describe: 22.09-13-g6d0aa9b37 AMReX git describe: 22.10-25-g75da8d5b7 Microphysics git describe: 22.10-5-g820f45d5 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016094821 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.347517464 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.343674634 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.3395481 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.340092515 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.344634196 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.344905275 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.337476664 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.337796066 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.338345179 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.338584724 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010606199 seconds Ending run at 17:05:15 UTC on 2022-10-29. Run time = 3.655575425 Run time without initialization = 3.431059312 Average number of zones advanced per microsecond: 0.764 Average number of zones advanced per microsecond per rank: 0.096 TinyProfiler total time across processes [min...avg...max]: 3.653 ... 3.655 ... 3.656 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1615 2.4049 2.5020 68.44% Castro::do_advance_ctu() 10 0.03158 0.1284 0.3746 10.25% Gravity::make_radial_gravity() 21 0.3355 0.3524 0.3728 10.20% Castro::initData() 1 0.03911 0.08779 0.1507 4.12% Castro::estTimeStep() 21 0.02654 0.09567 0.1427 3.90% FabArray::ParallelCopy_finish() 41 0.03528 0.05806 0.1153 3.15% FabArray::setVal() 143 0.05924 0.06498 0.068 1.86% Castro::reset_internal_energy(Fab) 1008 0.04696 0.04996 0.05138 1.41% FabArray::ParallelCopy_nowait() 41 0.02801 0.04385 0.04958 1.36% StateData::FillBoundary(geom) 41 0.03643 0.04146 0.04522 1.24% Castro::normalize_species() 62 0.04025 0.04134 0.04179 1.14% FillPatchIterator::Initialize 41 0.02396 0.03581 0.0399 1.09% Gravity::interpolate_monopole_grav() 21 0.02668 0.02749 0.02791 0.76% Castro::construct_new_gravity_source() 10 0.02012 0.02203 0.02317 0.63% Castro::expand_state() 10 0.009806 0.01756 0.02125 0.58% Castro::computeTemp() 63 0.01771 0.0189 0.01964 0.54% Castro::initialize_do_advance() 10 0.01005 0.01663 0.01917 0.52% VisMF::Write(FabArray) 2 0.01283 0.01395 0.01675 0.46% MultiFab::Saxpy() 20 0.009142 0.0139 0.01589 0.43% Amr::writePlotFile() 2 0.01019 0.01314 0.0144 0.39% MultiFab::contains_nan() 20 0.00945 0.01081 0.01295 0.35% Gravity::get_new_grav_vector() 11 0.007299 0.01074 0.01225 0.34% FabArray::setDomainBndry() 41 0.005005 0.01024 0.01224 0.33% Castro::construct_old_gravity_source() 10 0.005246 0.009621 0.01128 0.31% Gravity::get_old_grav_vector() 10 0.005451 0.009023 0.01052 0.29% Castro::initMFs() 1 0.00677 0.007817 0.01024 0.28% Castro::initialize_advance() 10 0.003609 0.007101 0.008359 0.23% StateData::define() 4 0.005706 0.006479 0.008294 0.23% main() 1 0.00433 0.006526 0.007163 0.20% Castro::construct_new_source() 50 0.004981 0.006407 0.007077 0.19% Castro::enforce_min_density() 62 0.005373 0.00605 0.006495 0.18% Castro::swap_state_time_levels() 10 0.003197 0.004219 0.00453 0.12% Castro::finalize_advance() 10 0.00338 0.003492 0.003651 0.10% Amr::coarseTimeStep() 10 0.001935 0.002506 0.003631 0.10% Castro::buildMetrics() 1 0.001652 0.00187 0.002367 0.06% Castro::finalize_do_advance() 10 0.0007804 0.001361 0.001728 0.05% Amr::InitAmr() 1 0.0002935 0.0003655 0.0005018 0.01% Amr::timeStep() 10 0.0001727 0.000257 0.0004941 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002661 0.0002857 0.000298 0.01% DistributionMapping::LeastUsedCPUs() 1 5.983e-06 0.0001654 0.0002381 0.01% Castro::clean_state() 62 0.0001573 0.0001746 0.0001909 0.01% Castro::enforce_consistent_e() 1 8.123e-05 9.532e-05 0.0001452 0.00% StateDataPhysBCFunct::() 41 8.882e-05 0.0001136 0.0001267 0.00% Castro::construct_old_source() 50 3.031e-05 6.872e-05 8.947e-05 0.00% FabArray::ParallelCopy() 41 6.409e-05 8.24e-05 8.876e-05 0.00% Castro::do_new_sources() 10 3.939e-05 6.945e-05 8.513e-05 0.00% FillPatchSingleLevel 41 5.158e-05 6.947e-05 8.18e-05 0.00% Castro::do_old_sources() 10 3.551e-05 6.659e-05 8.075e-05 0.00% Castro::Castro() 1 5.827e-05 6.753e-05 7.839e-05 0.00% Castro::subcycle_advance_ctu() 10 3.91e-05 5.409e-05 7.792e-05 0.00% Amr::FinalizeInit() 1 4.48e-06 1.429e-05 7.114e-05 0.00% Amr::writeSmallPlotFile() 1 3.304e-05 6.163e-05 6.926e-05 0.00% FabArrayBase::getCPC() 41 5.451e-05 6.071e-05 6.672e-05 0.00% Castro::construct_old_gravity() 10 3.38e-05 5.526e-05 6.387e-05 0.00% Castro::apply_source_to_state() 20 3.494e-05 4.573e-05 5.719e-05 0.00% Castro::construct_new_gravity() 10 3.927e-05 4.598e-05 5.041e-05 0.00% Castro::advance() 10 3.221e-05 4.306e-05 4.891e-05 0.00% Castro::enforce_speed_limit() 62 2.66e-05 2.971e-05 3.308e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.444e-05 2.277e-05 3.134e-05 0.00% Amr::defBaseLevel() 1 1.77e-05 2.406e-05 3.017e-05 0.00% Castro::check_for_nan() 20 2.04e-05 2.366e-05 2.869e-05 0.00% Castro::post_timestep() 10 1.747e-05 2.38e-05 2.857e-05 0.00% FabArrayBase::CPC::define() 2 2.037e-05 2.363e-05 2.627e-05 0.00% Gravity::swapTimeLevels() 10 5.413e-06 1.195e-05 1.517e-05 0.00% Amr::initSubcycle() 1 8.164e-06 1.008e-05 1.416e-05 0.00% Castro::create_source_corrector() 10 6.336e-06 1e-05 1.324e-05 0.00% Gravity::set_mass_offset() 10 6.812e-06 1.048e-05 1.321e-05 0.00% Castro::FluxRegCrseInit 10 6.464e-06 8.775e-06 1.082e-05 0.00% Castro::computeNewDt() 9 7.908e-06 8.9e-06 9.672e-06 0.00% Amr::InitializeInit() 1 1.93e-06 4.042e-06 8.823e-06 0.00% Castro::retry_advance_ctu() 10 4.157e-06 5.865e-06 7.701e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.625e-06 5.04e-06 6.849e-06 0.00% Castro::post_regrid() 1 1.612e-06 3.605e-06 6.444e-06 0.00% Castro::computeInitialDt() 2 3.68e-06 4.284e-06 5.667e-06 0.00% Castro::post_init() 1 2.849e-06 3.675e-06 4.289e-06 0.00% Castro::FluxRegFineAdd() 10 1.813e-06 2.337e-06 3.114e-06 0.00% Amr::init() 1 1.92e-06 2.114e-06 2.572e-06 0.00% Amr::initialInit() 1 1.125e-06 1.481e-06 1.837e-06 0.00% DistributionMapping::Distribute() 1 8.62e-07 1.109e-06 1.424e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.653 3.655 3.656 100.00% Amr::coarseTimeStep() 10 3.413 3.413 3.413 93.37% Amr::timeStep() 10 3.399 3.401 3.401 93.04% Castro::advance() 10 3.384 3.384 3.385 92.59% Castro::subcycle_advance_ctu() 10 3.312 3.315 3.322 90.86% Castro::do_advance_ctu() 10 3.312 3.315 3.321 90.86% Castro::construct_ctu_hydro_source() 10 2.161 2.405 2.502 68.44% Gravity::make_radial_gravity() 21 0.3355 0.3524 0.3728 10.20% Gravity::get_new_grav_vector() 11 0.2263 0.2286 0.23 6.29% Castro::construct_old_gravity() 10 0.1962 0.2117 0.2268 6.20% Gravity::get_old_grav_vector() 10 0.1953 0.2109 0.2262 6.19% Amr::init() 1 0.2238 0.224 0.2241 6.13% FillPatchIterator::Initialize 41 0.1799 0.1898 0.2096 5.73% Amr::initialInit() 1 0.2072 0.2076 0.2078 5.69% Castro::construct_new_gravity() 10 0.2003 0.2017 0.203 5.55% Castro::initialize_do_advance() 10 0.1645 0.1721 0.1807 4.94% FillPatchSingleLevel 41 0.1287 0.1437 0.1806 4.94% Amr::InitializeInit() 1 0.05991 0.1103 0.1772 4.85% Amr::defBaseLevel() 1 0.05991 0.1103 0.1772 4.85% Castro::initData() 1 0.04307 0.09184 0.1544 4.22% Amr::FinalizeInit() 1 0.03008 0.09728 0.1477 4.04% FabArray::ParallelCopy() 41 0.08485 0.1021 0.1435 3.92% Castro::estTimeStep() 21 0.02654 0.09567 0.1427 3.90% Castro::expand_state() 10 0.1221 0.1256 0.1318 3.61% Castro::computeInitialDt() 2 0.002211 0.06921 0.1197 3.27% Castro::clean_state() 62 0.1098 0.1157 0.1186 3.24% FabArray::ParallelCopy_finish() 41 0.03528 0.05806 0.1153 3.15% Castro::computeTemp() 63 0.06493 0.06914 0.07119 1.95% Castro::initialize_advance() 10 0.05882 0.06627 0.06922 1.89% FabArray::setVal() 143 0.05924 0.06498 0.068 1.86% Castro::do_new_sources() 10 0.05427 0.061 0.06364 1.74% Castro::reset_internal_energy(MultiFab) 63 0.04722 0.05024 0.05167 1.41% Castro::reset_internal_energy(Fab) 1008 0.04696 0.04996 0.05138 1.41% FabArray::ParallelCopy_nowait() 41 0.0281 0.04393 0.04967 1.36% Castro::do_old_sources() 10 0.03333 0.04372 0.04762 1.30% StateDataPhysBCFunct::() 41 0.03652 0.04158 0.04534 1.24% StateData::FillBoundary(geom) 41 0.03643 0.04146 0.04522 1.24% Castro::normalize_species() 62 0.04025 0.04134 0.04179 1.14% Castro::construct_new_source() 50 0.0251 0.02844 0.03003 0.82% Gravity::interpolate_monopole_grav() 21 0.02668 0.02749 0.02791 0.76% Castro::post_init() 1 0.02707 0.02759 0.0279 0.76% Amr::writePlotFile() 2 0.02693 0.0271 0.0273 0.75% Castro::construct_new_gravity_source() 10 0.02012 0.02203 0.02317 0.63% VisMF::Write(FabArray) 2 0.01283 0.01395 0.01675 0.46% Castro::post_timestep() 10 0.0152 0.01592 0.01637 0.45% Castro::apply_source_to_state() 20 0.009177 0.01394 0.01594 0.44% MultiFab::Saxpy() 20 0.009142 0.0139 0.01589 0.43% Castro::Castro() 1 0.01072 0.01177 0.0144 0.39% Castro::check_for_nan() 20 0.009472 0.01084 0.01298 0.36% MultiFab::contains_nan() 20 0.00945 0.01081 0.01295 0.35% FabArray::setDomainBndry() 41 0.005005 0.01024 0.01224 0.33% Castro::construct_old_source() 50 0.005276 0.00969 0.01137 0.31% Castro::construct_old_gravity_source() 10 0.005246 0.009621 0.01128 0.31% Castro::initMFs() 1 0.00677 0.007817 0.01024 0.28% Castro::computeNewDt() 9 0.008979 0.008983 0.008987 0.25% AmrLevel::AmrLevel(dm) 1 0.00573 0.006502 0.008325 0.23% StateData::define() 4 0.005706 0.006479 0.008294 0.23% Castro::enforce_min_density() 62 0.005373 0.00605 0.006495 0.18% Castro::swap_state_time_levels() 10 0.003197 0.004219 0.00453 0.12% Castro::finalize_advance() 10 0.003392 0.003503 0.00366 0.10% Castro::buildMetrics() 1 0.001786 0.00202 0.002586 0.07% Castro::post_regrid() 1 0.001535 0.001696 0.002345 0.06% Castro::finalize_do_advance() 10 0.0007804 0.001361 0.001728 0.05% Amr::InitAmr() 1 0.0003025 0.0003756 0.0005154 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.144e-05 0.0001715 0.000246 0.01% DistributionMapping::LeastUsedCPUs() 1 5.983e-06 0.0001654 0.0002381 0.01% Castro::enforce_consistent_e() 1 8.123e-05 9.532e-05 0.0001452 0.00% FabArrayBase::getCPC() 41 7.732e-05 8.434e-05 9.092e-05 0.00% Amr::writeSmallPlotFile() 1 3.304e-05 6.163e-05 6.926e-05 0.00% Castro::enforce_speed_limit() 62 2.66e-05 2.971e-05 3.308e-05 0.00% FabArrayBase::CPC::define() 2 2.037e-05 2.363e-05 2.627e-05 0.00% Gravity::swapTimeLevels() 10 5.413e-06 1.195e-05 1.517e-05 0.00% Amr::initSubcycle() 1 8.164e-06 1.008e-05 1.416e-05 0.00% Castro::create_source_corrector() 10 6.336e-06 1e-05 1.324e-05 0.00% Gravity::set_mass_offset() 10 6.812e-06 1.048e-05 1.321e-05 0.00% Castro::FluxRegCrseInit 10 6.464e-06 8.775e-06 1.082e-05 0.00% Castro::retry_advance_ctu() 10 4.157e-06 5.865e-06 7.701e-06 0.00% Castro::FluxRegFineAdd() 10 1.813e-06 2.337e-06 3.114e-06 0.00% DistributionMapping::Distribute() 1 8.62e-07 1.109e-06 1.424e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.10-25-g75da8d5b782d) finalized