MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.11-1-gc4a4811c373d) initialized Starting run at 05:37:16 UTC on 2022-11-02. Successfully read inputs file ... Castro git describe: 22.11-1-gb27642d86 AMReX git describe: 22.11-1-gc4a4811c3 Microphysics git describe: 22.10-6-gba400003 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016350827 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.368451159 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.34090968 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.340714015 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.341963494 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.348151544 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.345088008 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.339309608 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.338108749 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.337875367 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.338106004 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010481923 seconds Ending run at 05:37:19 UTC on 2022-11-02. Run time = 3.682745444 Run time without initialization = 3.457101475 Average number of zones advanced per microsecond: 0.758 Average number of zones advanced per microsecond per rank: 0.095 TinyProfiler total time across processes [min...avg...max]: 3.68 ... 3.682 ... 3.683 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1559 2.4032 2.5005 67.90% Castro::do_advance_ctu() 10 0.04156 0.1406 0.3905 10.60% Gravity::make_radial_gravity() 21 0.3451 0.3579 0.3824 10.38% Castro::initData() 1 0.03989 0.08785 0.1507 4.09% Castro::estTimeStep() 21 0.03013 0.09959 0.1475 4.00% FabArray::ParallelCopy_finish() 41 0.03743 0.05678 0.1239 3.36% FabArray::setVal() 143 0.05041 0.06548 0.0695 1.89% Castro::reset_internal_energy(Fab) 1008 0.04746 0.04986 0.05232 1.42% FabArray::ParallelCopy_nowait() 41 0.0275 0.04444 0.0501 1.36% StateData::FillBoundary(geom) 41 0.0367 0.04181 0.04675 1.27% Castro::normalize_species() 62 0.0399 0.04145 0.04274 1.16% FillPatchIterator::Initialize 41 0.02425 0.03623 0.04066 1.10% Gravity::interpolate_monopole_grav() 21 0.02632 0.02753 0.02822 0.77% Castro::construct_new_gravity_source() 10 0.01945 0.02263 0.02359 0.64% Castro::expand_state() 10 0.009823 0.01814 0.02171 0.59% Castro::computeTemp() 63 0.01786 0.01895 0.01992 0.54% Castro::initialize_do_advance() 10 0.01026 0.01748 0.01959 0.53% VisMF::Write(FabArray) 2 0.01279 0.01369 0.01668 0.45% MultiFab::Saxpy() 20 0.008794 0.01426 0.01614 0.44% Amr::writePlotFile() 2 0.01037 0.0133 0.01429 0.39% Gravity::get_new_grav_vector() 11 0.007544 0.01133 0.01276 0.35% FabArray::setDomainBndry() 41 0.004869 0.01026 0.01235 0.34% MultiFab::contains_nan() 20 0.009466 0.01099 0.01195 0.32% Castro::construct_old_gravity_source() 10 0.004934 0.01011 0.01165 0.32% Gravity::get_old_grav_vector() 10 0.00537 0.009234 0.01078 0.29% Castro::initialize_advance() 10 0.003284 0.008652 0.01013 0.28% Castro::initMFs() 1 0.006797 0.008038 0.01007 0.27% StateData::define() 4 0.005639 0.006609 0.008291 0.23% main() 1 0.004487 0.006391 0.00733 0.20% Castro::construct_new_source() 50 0.00489 0.006577 0.007134 0.19% Castro::enforce_min_density() 62 0.00584 0.006644 0.007129 0.19% Castro::swap_state_time_levels() 10 0.003352 0.0045 0.005219 0.14% Amr::coarseTimeStep() 10 0.001069 0.002003 0.004407 0.12% Castro::finalize_advance() 10 0.003123 0.003407 0.00352 0.10% Castro::buildMetrics() 1 0.001594 0.001887 0.002375 0.06% Castro::finalize_do_advance() 10 0.0006384 0.001618 0.001974 0.05% Amr::InitAmr() 1 0.0002812 0.000365 0.000504 0.01% Amr::timeStep() 10 0.0001964 0.0002724 0.0004413 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002784 0.0002983 0.000326 0.01% DistributionMapping::LeastUsedCPUs() 1 7.044e-06 0.0001678 0.0002565 0.01% Castro::clean_state() 62 0.0001285 0.0001662 0.0001819 0.00% StateDataPhysBCFunct::() 41 8.906e-05 0.0001183 0.0001399 0.00% Castro::enforce_consistent_e() 1 7.861e-05 8.795e-05 0.0001036 0.00% FabArray::ParallelCopy() 41 7.279e-05 8.458e-05 0.0001028 0.00% Amr::FinalizeInit() 1 4.524e-06 1.75e-05 9.783e-05 0.00% Castro::construct_old_source() 50 3.243e-05 7.232e-05 9.274e-05 0.00% Castro::do_new_sources() 10 4.572e-05 6.854e-05 8.207e-05 0.00% Castro::do_old_sources() 10 4.408e-05 6.759e-05 7.908e-05 0.00% Castro::advance() 10 3.604e-05 5.184e-05 7.723e-05 0.00% FillPatchSingleLevel 41 5.267e-05 6.82e-05 7.522e-05 0.00% Castro::Castro() 1 5.691e-05 6.433e-05 7.098e-05 0.00% Castro::subcycle_advance_ctu() 10 3.404e-05 5.691e-05 7.066e-05 0.00% Amr::writeSmallPlotFile() 1 2.551e-05 5.903e-05 6.982e-05 0.00% FabArrayBase::getCPC() 41 4.655e-05 5.542e-05 6.182e-05 0.00% Castro::construct_old_gravity() 10 3.857e-05 5.259e-05 6.102e-05 0.00% Castro::apply_source_to_state() 20 3.07e-05 4.72e-05 5.544e-05 0.00% Castro::construct_new_gravity() 10 4.013e-05 4.646e-05 5.012e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.439e-05 2.6e-05 3.909e-05 0.00% Castro::post_timestep() 10 1.732e-05 2.464e-05 3.379e-05 0.00% Castro::enforce_speed_limit() 62 2.134e-05 2.729e-05 3.101e-05 0.00% Amr::defBaseLevel() 1 1.854e-05 2.41e-05 3.012e-05 0.00% FabArrayBase::CPC::define() 2 2.249e-05 2.482e-05 2.897e-05 0.00% Castro::check_for_nan() 20 2.017e-05 2.449e-05 2.895e-05 0.00% Castro::FluxRegCrseInit 10 4.815e-06 1.105e-05 1.75e-05 0.00% Gravity::set_mass_offset() 10 6.87e-06 1.135e-05 1.704e-05 0.00% Castro::computeNewDt() 9 6.81e-06 1.04e-05 1.615e-05 0.00% Amr::initSubcycle() 1 8.373e-06 1.035e-05 1.484e-05 0.00% Gravity::swapTimeLevels() 10 6.126e-06 1.223e-05 1.474e-05 0.00% Castro::create_source_corrector() 10 8.208e-06 1.07e-05 1.29e-05 0.00% Amr::InitializeInit() 1 1.898e-06 3.549e-06 8.099e-06 0.00% Castro::post_init() 1 3.192e-06 4.336e-06 8.065e-06 0.00% Castro::FluxRegFineAdd() 10 1.685e-06 3.065e-06 7.964e-06 0.00% Castro::retry_advance_ctu() 10 4.811e-06 6.184e-06 6.998e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.89e-06 5.388e-06 6.785e-06 0.00% Castro::post_regrid() 1 2.282e-06 3.344e-06 6.425e-06 0.00% Castro::computeInitialDt() 2 3.885e-06 4.273e-06 4.67e-06 0.00% Amr::init() 1 1.926e-06 2.32e-06 2.6e-06 0.00% Amr::initialInit() 1 1.432e-06 1.68e-06 1.983e-06 0.00% DistributionMapping::Distribute() 1 1.027e-06 1.188e-06 1.444e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.68 3.682 3.683 100.00% Amr::coarseTimeStep() 10 3.439 3.439 3.439 93.39% Amr::timeStep() 10 3.425 3.427 3.428 93.08% Castro::advance() 10 3.409 3.411 3.411 92.62% Castro::subcycle_advance_ctu() 10 3.335 3.34 3.355 91.09% Castro::do_advance_ctu() 10 3.335 3.34 3.355 91.09% Castro::construct_ctu_hydro_source() 10 2.156 2.403 2.501 67.90% Gravity::make_radial_gravity() 21 0.3451 0.3579 0.3824 10.38% Castro::construct_old_gravity() 10 0.2052 0.2156 0.2347 6.37% Gravity::get_old_grav_vector() 10 0.2043 0.2148 0.2341 6.36% Gravity::get_new_grav_vector() 11 0.2286 0.2315 0.2331 6.33% Amr::init() 1 0.225 0.2251 0.2252 6.12% FillPatchIterator::Initialize 41 0.1795 0.1899 0.2181 5.92% Amr::initialInit() 1 0.2084 0.2087 0.2089 5.67% Castro::construct_new_gravity() 10 0.2018 0.204 0.2054 5.58% FillPatchSingleLevel 41 0.1276 0.1434 0.189 5.13% Castro::initialize_do_advance() 10 0.1642 0.173 0.1789 4.86% Amr::InitializeInit() 1 0.0597 0.1101 0.1774 4.82% Amr::defBaseLevel() 1 0.05969 0.1101 0.1774 4.82% Castro::initData() 1 0.04358 0.09159 0.1548 4.20% FabArray::ParallelCopy() 41 0.08659 0.1014 0.1515 4.11% Amr::FinalizeInit() 1 0.03148 0.09858 0.1489 4.04% Castro::estTimeStep() 21 0.03013 0.09959 0.1475 4.00% Castro::expand_state() 10 0.1186 0.1252 0.1314 3.57% FabArray::ParallelCopy_finish() 41 0.03743 0.05678 0.1239 3.36% Castro::clean_state() 62 0.1107 0.1165 0.1215 3.30% Castro::computeInitialDt() 2 0.002341 0.06978 0.1203 3.27% Castro::computeTemp() 63 0.06561 0.06911 0.07257 1.97% Castro::initialize_advance() 10 0.05154 0.06738 0.07204 1.96% FabArray::setVal() 143 0.05041 0.06548 0.0695 1.89% Castro::do_new_sources() 10 0.05321 0.06285 0.06496 1.76% Castro::reset_internal_energy(MultiFab) 63 0.04775 0.05016 0.05265 1.43% Castro::reset_internal_energy(Fab) 1008 0.04746 0.04986 0.05232 1.42% FabArray::ParallelCopy_nowait() 41 0.02759 0.04452 0.05017 1.36% Castro::do_old_sources() 10 0.03282 0.04506 0.04883 1.33% StateDataPhysBCFunct::() 41 0.03679 0.04193 0.04689 1.27% StateData::FillBoundary(geom) 41 0.0367 0.04181 0.04675 1.27% Castro::normalize_species() 62 0.0399 0.04145 0.04274 1.16% Castro::construct_new_source() 50 0.02434 0.02921 0.03072 0.83% Castro::post_init() 1 0.02786 0.02833 0.02856 0.78% Gravity::interpolate_monopole_grav() 21 0.02632 0.02753 0.02822 0.77% Amr::writePlotFile() 2 0.02665 0.02698 0.0272 0.74% Castro::construct_new_gravity_source() 10 0.01945 0.02263 0.02359 0.64% Castro::post_timestep() 10 0.01504 0.01623 0.01686 0.46% VisMF::Write(FabArray) 2 0.01279 0.01369 0.01668 0.45% Castro::apply_source_to_state() 20 0.008839 0.0143 0.0162 0.44% MultiFab::Saxpy() 20 0.008794 0.01426 0.01614 0.44% Castro::Castro() 1 0.01016 0.01169 0.01427 0.39% FabArray::setDomainBndry() 41 0.004869 0.01026 0.01235 0.34% Castro::check_for_nan() 20 0.009488 0.01102 0.01198 0.33% MultiFab::contains_nan() 20 0.009466 0.01099 0.01195 0.32% Castro::construct_old_source() 50 0.004966 0.01018 0.01173 0.32% Castro::construct_old_gravity_source() 10 0.004934 0.01011 0.01165 0.32% Castro::initMFs() 1 0.006797 0.008038 0.01007 0.27% Castro::computeNewDt() 9 0.009131 0.009139 0.009144 0.25% AmrLevel::AmrLevel(dm) 1 0.005658 0.006635 0.00833 0.23% StateData::define() 4 0.005639 0.006609 0.008291 0.23% Castro::enforce_min_density() 62 0.00584 0.006644 0.007129 0.19% Castro::swap_state_time_levels() 10 0.003352 0.0045 0.005219 0.14% Castro::finalize_advance() 10 0.00313 0.003421 0.003537 0.10% Castro::buildMetrics() 1 0.001713 0.002039 0.002609 0.07% Castro::finalize_do_advance() 10 0.0006384 0.001618 0.001974 0.05% Castro::post_regrid() 1 0.00151 0.001642 0.001941 0.05% Amr::InitAmr() 1 0.0002897 0.0003753 0.0005172 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.248e-05 0.0001744 0.0002642 0.01% DistributionMapping::LeastUsedCPUs() 1 7.044e-06 0.0001678 0.0002565 0.01% Castro::enforce_consistent_e() 1 7.861e-05 8.795e-05 0.0001036 0.00% FabArrayBase::getCPC() 41 6.904e-05 8.025e-05 8.759e-05 0.00% Amr::writeSmallPlotFile() 1 2.551e-05 5.903e-05 6.982e-05 0.00% Castro::enforce_speed_limit() 62 2.134e-05 2.729e-05 3.101e-05 0.00% FabArrayBase::CPC::define() 2 2.249e-05 2.482e-05 2.897e-05 0.00% Castro::FluxRegCrseInit 10 4.815e-06 1.105e-05 1.75e-05 0.00% Gravity::set_mass_offset() 10 6.87e-06 1.135e-05 1.704e-05 0.00% Amr::initSubcycle() 1 8.373e-06 1.035e-05 1.484e-05 0.00% Gravity::swapTimeLevels() 10 6.126e-06 1.223e-05 1.474e-05 0.00% Castro::create_source_corrector() 10 8.208e-06 1.07e-05 1.29e-05 0.00% Castro::FluxRegFineAdd() 10 1.685e-06 3.065e-06 7.964e-06 0.00% Castro::retry_advance_ctu() 10 4.811e-06 6.184e-06 6.998e-06 0.00% DistributionMapping::Distribute() 1 1.027e-06 1.188e-06 1.444e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.11-1-gc4a4811c373d) finalized