MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.11-6-g6044e9c2bb9a) initialized Starting run at 18:08:21 UTC on 2022-11-03. Successfully read inputs file ... Castro git describe: 22.11-1-gb27642d86 AMReX git describe: 22.11-6-g6044e9c2b Microphysics git describe: 22.11-6-gfbd198fc reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016764312 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.364168036 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.345156458 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.344178366 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.346077281 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.356639637 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.352172911 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.341582631 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.339501283 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.340258667 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.341679179 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010424352 seconds Ending run at 18:08:25 UTC on 2022-11-03. Run time = 3.700179243 Run time without initialization = 3.489669599 Average number of zones advanced per microsecond: 0.751 Average number of zones advanced per microsecond per rank: 0.094 TinyProfiler total time across processes [min...avg...max]: 3.697 ... 3.7 ... 3.7 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.0869 2.4147 2.5287 68.34% Castro::do_advance_ctu() 10 0.03346 0.1471 0.4773 12.90% Gravity::make_radial_gravity() 21 0.355 0.3681 0.3953 10.68% FabArray::ParallelCopy_finish() 41 0.04385 0.06529 0.133 3.60% Castro::initData() 1 0.04729 0.08915 0.128 3.46% Castro::estTimeStep() 21 0.03071 0.07142 0.1116 3.02% FabArray::setVal() 143 0.05346 0.06702 0.06994 1.89% Castro::reset_internal_energy(Fab) 1008 0.04715 0.05044 0.05251 1.42% FabArray::ParallelCopy_nowait() 41 0.02748 0.0453 0.0512 1.38% StateData::FillBoundary(geom) 41 0.03478 0.04248 0.04683 1.27% Castro::normalize_species() 62 0.04084 0.04159 0.04224 1.14% FillPatchIterator::Initialize 41 0.02482 0.03632 0.04042 1.09% Gravity::interpolate_monopole_grav() 21 0.02583 0.02759 0.02849 0.77% Castro::construct_new_gravity_source() 10 0.0194 0.02291 0.02381 0.64% Castro::expand_state() 10 0.009851 0.01877 0.0222 0.60% Castro::computeTemp() 63 0.01782 0.01927 0.02034 0.55% Castro::initialize_do_advance() 10 0.01011 0.01737 0.0193 0.52% VisMF::Write(FabArray) 2 0.01265 0.01381 0.01835 0.50% MultiFab::Saxpy() 20 0.008706 0.01467 0.0169 0.46% Amr::writePlotFile() 2 0.009061 0.01395 0.01549 0.42% Gravity::get_new_grav_vector() 11 0.00785 0.01149 0.01273 0.34% MultiFab::contains_nan() 20 0.00921 0.01103 0.01259 0.34% FabArray::setDomainBndry() 41 0.004931 0.01035 0.01239 0.33% Castro::construct_old_gravity_source() 10 0.004996 0.01017 0.01216 0.33% Castro::initialize_advance() 10 0.00694 0.01009 0.01109 0.30% Gravity::get_old_grav_vector() 10 0.005589 0.009352 0.01089 0.29% Castro::initMFs() 1 0.006698 0.007829 0.01006 0.27% StateData::define() 4 0.005678 0.006553 0.008345 0.23% Castro::construct_new_source() 50 0.004707 0.006617 0.00735 0.20% main() 1 0.004253 0.006443 0.007142 0.19% Castro::enforce_min_density() 62 0.005369 0.006126 0.006648 0.18% Castro::swap_state_time_levels() 10 0.002605 0.004467 0.005229 0.14% Castro::finalize_advance() 10 0.003072 0.003583 0.003721 0.10% Amr::coarseTimeStep() 10 0.00183 0.002276 0.003653 0.10% Castro::buildMetrics() 1 0.0016 0.001878 0.002364 0.06% Castro::finalize_do_advance() 10 0.0006464 0.001443 0.001721 0.05% Amr::InitAmr() 1 0.0003075 0.0003817 0.0006466 0.02% Amr::timeStep() 10 0.0001751 0.0002527 0.0004371 0.01% DistributionMapping::LeastUsedCPUs() 1 8.847e-06 0.0003116 0.0003971 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002855 0.0002979 0.0003099 0.01% Castro::clean_state() 62 0.0001565 0.000177 0.0001965 0.01% StateDataPhysBCFunct::() 41 0.0001038 0.0001329 0.0001636 0.00% Castro::enforce_consistent_e() 1 8.061e-05 0.0001004 0.0001486 0.00% Castro::construct_old_source() 50 3.23e-05 7.643e-05 0.0001062 0.00% FabArray::ParallelCopy() 41 7.105e-05 8.947e-05 0.0001008 0.00% Castro::do_new_sources() 10 4.322e-05 7.028e-05 9.323e-05 0.00% Castro::do_old_sources() 10 3.769e-05 6.838e-05 8.497e-05 0.00% Castro::Castro() 1 5.45e-05 6.683e-05 8.172e-05 0.00% Amr::FinalizeInit() 1 3.772e-06 1.396e-05 7.956e-05 0.00% FillPatchSingleLevel 41 5.522e-05 6.637e-05 7.676e-05 0.00% Castro::subcycle_advance_ctu() 10 3.239e-05 5.419e-05 7.626e-05 0.00% Amr::writeSmallPlotFile() 1 2.451e-05 5.593e-05 7.208e-05 0.00% Castro::construct_old_gravity() 10 4.119e-05 5.745e-05 6.551e-05 0.00% FabArrayBase::getCPC() 41 5.095e-05 5.912e-05 6.346e-05 0.00% Castro::advance() 10 2.824e-05 4.403e-05 6.075e-05 0.00% Castro::apply_source_to_state() 20 3.169e-05 4.993e-05 6.001e-05 0.00% Castro::construct_new_gravity() 10 3.569e-05 4.497e-05 5.35e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.659e-05 2.378e-05 3.928e-05 0.00% Castro::enforce_speed_limit() 62 2.199e-05 2.829e-05 3.777e-05 0.00% Castro::post_timestep() 10 1.507e-05 2.392e-05 3.341e-05 0.00% Amr::defBaseLevel() 1 2.169e-05 2.498e-05 2.874e-05 0.00% Castro::check_for_nan() 20 2.025e-05 2.528e-05 2.847e-05 0.00% FabArrayBase::CPC::define() 2 2.092e-05 2.47e-05 2.762e-05 0.00% Gravity::swapTimeLevels() 10 6.437e-06 1.247e-05 1.557e-05 0.00% Amr::initSubcycle() 1 8.834e-06 1.057e-05 1.507e-05 0.00% Castro::create_source_corrector() 10 7.244e-06 1.093e-05 1.377e-05 0.00% Gravity::set_mass_offset() 10 6.458e-06 9.991e-06 1.172e-05 0.00% Castro::computeNewDt() 9 7.697e-06 9.272e-06 1.088e-05 0.00% Castro::post_init() 1 3.238e-06 4.985e-06 1.046e-05 0.00% Castro::FluxRegCrseInit 10 5.862e-06 8.423e-06 9.945e-06 0.00% Amr::InitializeInit() 1 2.033e-06 4.209e-06 8.114e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.651e-06 5.227e-06 7.918e-06 0.00% Castro::retry_advance_ctu() 10 4.528e-06 6.145e-06 7.772e-06 0.00% Castro::post_regrid() 1 1.884e-06 3.222e-06 4.348e-06 0.00% Castro::computeInitialDt() 2 3.094e-06 3.6e-06 4.115e-06 0.00% Castro::FluxRegFineAdd() 10 1.801e-06 2.376e-06 3.297e-06 0.00% Amr::init() 1 2.045e-06 2.392e-06 2.944e-06 0.00% Amr::initialInit() 1 1.288e-06 1.612e-06 1.904e-06 0.00% DistributionMapping::Distribute() 1 8.84e-07 1.134e-06 1.571e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.697 3.7 3.7 100.00% Amr::coarseTimeStep() 10 3.472 3.472 3.472 93.84% Amr::timeStep() 10 3.458 3.46 3.46 93.52% Castro::advance() 10 3.442 3.444 3.444 93.07% Castro::subcycle_advance_ctu() 10 3.366 3.37 3.383 91.43% Castro::do_advance_ctu() 10 3.366 3.37 3.383 91.43% Castro::construct_ctu_hydro_source() 10 2.087 2.415 2.529 68.34% Gravity::make_radial_gravity() 21 0.355 0.3681 0.3953 10.68% Gravity::get_new_grav_vector() 11 0.2398 0.2441 0.2465 6.66% Castro::construct_old_gravity() 10 0.204 0.216 0.2368 6.40% Gravity::get_old_grav_vector() 10 0.2031 0.2152 0.2363 6.39% FillPatchIterator::Initialize 41 0.1888 0.2001 0.226 6.11% Amr::init() 1 0.2097 0.21 0.2101 5.68% Castro::construct_new_gravity() 10 0.2011 0.2048 0.2068 5.59% FillPatchSingleLevel 41 0.137 0.1535 0.1956 5.29% Amr::initialInit() 1 0.1921 0.1927 0.1932 5.22% Castro::initialize_do_advance() 10 0.1678 0.1799 0.1864 5.04% FabArray::ParallelCopy() 41 0.09311 0.1108 0.1607 4.34% Amr::InitializeInit() 1 0.0697 0.1119 0.1498 4.05% Amr::defBaseLevel() 1 0.0697 0.1119 0.1498 4.05% Castro::expand_state() 10 0.124 0.1324 0.1367 3.70% FabArray::ParallelCopy_finish() 41 0.04385 0.06529 0.133 3.60% Castro::initData() 1 0.05142 0.09337 0.1316 3.56% Amr::FinalizeInit() 1 0.04335 0.0808 0.1228 3.32% Castro::clean_state() 62 0.1106 0.1168 0.1205 3.26% Castro::estTimeStep() 21 0.03071 0.07142 0.1116 3.02% Castro::computeInitialDt() 2 0.002249 0.04012 0.08238 2.23% Castro::initialize_advance() 10 0.05589 0.07015 0.07361 1.99% Castro::computeTemp() 63 0.06577 0.07001 0.07316 1.98% FabArray::setVal() 143 0.05346 0.06702 0.06994 1.89% Castro::do_new_sources() 10 0.05276 0.06328 0.06554 1.77% Castro::reset_internal_energy(MultiFab) 63 0.04745 0.05073 0.05282 1.43% Castro::reset_internal_energy(Fab) 1008 0.04715 0.05044 0.05251 1.42% FabArray::ParallelCopy_nowait() 41 0.02756 0.04539 0.05128 1.39% Castro::do_old_sources() 10 0.03241 0.04534 0.04976 1.34% StateDataPhysBCFunct::() 41 0.03488 0.04262 0.04696 1.27% StateData::FillBoundary(geom) 41 0.03478 0.04248 0.04683 1.27% Castro::normalize_species() 62 0.04084 0.04159 0.04224 1.14% Castro::post_init() 1 0.03861 0.04001 0.04084 1.10% Castro::construct_new_source() 50 0.02411 0.02952 0.03106 0.84% Gravity::interpolate_monopole_grav() 21 0.02583 0.02759 0.02849 0.77% Amr::writePlotFile() 2 0.02733 0.02776 0.02821 0.76% Castro::construct_new_gravity_source() 10 0.0194 0.02291 0.02381 0.64% VisMF::Write(FabArray) 2 0.01265 0.01381 0.01835 0.50% Castro::apply_source_to_state() 20 0.008738 0.01472 0.01696 0.46% MultiFab::Saxpy() 20 0.008706 0.01467 0.0169 0.46% Castro::post_timestep() 10 0.01582 0.01603 0.01634 0.44% Castro::Castro() 1 0.01032 0.01161 0.01426 0.39% Castro::check_for_nan() 20 0.00923 0.01105 0.01262 0.34% MultiFab::contains_nan() 20 0.00921 0.01103 0.01259 0.34% FabArray::setDomainBndry() 41 0.004931 0.01035 0.01239 0.33% Castro::construct_old_source() 50 0.005028 0.01025 0.01226 0.33% Castro::construct_old_gravity_source() 10 0.004996 0.01017 0.01216 0.33% Castro::initMFs() 1 0.006698 0.007829 0.01006 0.27% Castro::computeNewDt() 9 0.008792 0.008798 0.008804 0.24% AmrLevel::AmrLevel(dm) 1 0.005695 0.006577 0.008372 0.23% StateData::define() 4 0.005678 0.006553 0.008345 0.23% Castro::enforce_min_density() 62 0.005369 0.006126 0.006648 0.18% Castro::swap_state_time_levels() 10 0.002605 0.004467 0.005229 0.14% Castro::finalize_advance() 10 0.00308 0.003594 0.003734 0.10% Castro::post_regrid() 1 0.001548 0.001953 0.002946 0.08% Castro::buildMetrics() 1 0.001725 0.002028 0.002579 0.07% Castro::finalize_do_advance() 10 0.0006464 0.001443 0.001721 0.05% Amr::InitAmr() 1 0.0003169 0.0003923 0.0006604 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.425e-05 0.000318 0.0004045 0.01% DistributionMapping::LeastUsedCPUs() 1 8.847e-06 0.0003116 0.0003971 0.01% Castro::enforce_consistent_e() 1 8.061e-05 0.0001004 0.0001486 0.00% FabArrayBase::getCPC() 41 7.701e-05 8.382e-05 8.914e-05 0.00% Amr::writeSmallPlotFile() 1 2.451e-05 5.593e-05 7.208e-05 0.00% Castro::enforce_speed_limit() 62 2.199e-05 2.829e-05 3.777e-05 0.00% FabArrayBase::CPC::define() 2 2.092e-05 2.47e-05 2.762e-05 0.00% Gravity::swapTimeLevels() 10 6.437e-06 1.247e-05 1.557e-05 0.00% Amr::initSubcycle() 1 8.834e-06 1.057e-05 1.507e-05 0.00% Castro::create_source_corrector() 10 7.244e-06 1.093e-05 1.377e-05 0.00% Gravity::set_mass_offset() 10 6.458e-06 9.991e-06 1.172e-05 0.00% Castro::FluxRegCrseInit 10 5.862e-06 8.423e-06 9.945e-06 0.00% Castro::retry_advance_ctu() 10 4.528e-06 6.145e-06 7.772e-06 0.00% Castro::FluxRegFineAdd() 10 1.801e-06 2.376e-06 3.297e-06 0.00% DistributionMapping::Distribute() 1 8.84e-07 1.134e-06 1.571e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.11-6-g6044e9c2bb9a) finalized