MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.11-17-gd8bc97f92a1a) initialized Starting run at 15:40:25 UTC on 2022-11-14. Successfully read inputs file ... Castro git describe: 22.11-11-gd9abf7c4b AMReX git describe: 22.11-17-gd8bc97f92 Microphysics git describe: 22.11-21-g6bc0ff40 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015238562 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.359318649 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.34789389 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.345439093 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.345707362 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.361064221 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.353284552 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.338934865 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.339617864 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.340198462 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.341581565 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.01025871 seconds Ending run at 15:40:29 UTC on 2022-11-14. Run time = 3.684969075 Run time without initialization = 3.491617404 Average number of zones advanced per microsecond: 0.751 Average number of zones advanced per microsecond per rank: 0.094 TinyProfiler total time across processes [min...avg...max]: 3.682 ... 3.684 ... 3.685 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.0750 2.4107 2.5304 68.67% Castro::do_advance_ctu() 10 0.02991 0.15 0.4887 13.26% Gravity::make_radial_gravity() 21 0.343 0.3557 0.387 10.50% FabArray::ParallelCopy_finish() 41 0.04122 0.06274 0.134 3.64% Castro::initData() 1 0.03926 0.0799 0.1267 3.44% Castro::estTimeStep() 21 0.04386 0.08128 0.1195 3.24% FabArray::setVal() 143 0.05746 0.06883 0.07105 1.93% Castro::reset_internal_energy(Fab) 1008 0.04586 0.0502 0.05214 1.42% FabArray::ParallelCopy_nowait() 41 0.02641 0.04567 0.0512 1.39% StateData::FillBoundary(geom) 41 0.03457 0.04176 0.04517 1.23% Castro::normalize_species() 62 0.0385 0.04135 0.04253 1.15% FillPatchIterator::Initialize 41 0.02318 0.0371 0.04109 1.12% Gravity::interpolate_monopole_grav() 21 0.02528 0.02724 0.02792 0.76% Castro::construct_new_gravity_source() 10 0.01961 0.02279 0.02363 0.64% Castro::expand_state() 10 0.009403 0.01934 0.02317 0.63% Castro::initialize_do_advance() 10 0.009248 0.01852 0.02055 0.56% Castro::computeTemp() 63 0.01718 0.01909 0.01977 0.54% MultiFab::Saxpy() 20 0.008165 0.01428 0.0165 0.45% VisMF::Write(FabArray) 2 0.01153 0.01283 0.01539 0.42% Amr::writePlotFile() 2 0.01034 0.01283 0.01435 0.39% Gravity::get_new_grav_vector() 11 0.007375 0.01189 0.01326 0.36% FabArray::setDomainBndry() 41 0.004705 0.0111 0.01288 0.35% MultiFab::contains_nan() 20 0.009404 0.01124 0.01247 0.34% Castro::construct_old_gravity_source() 10 0.00488 0.01002 0.01163 0.32% Gravity::get_old_grav_vector() 10 0.005204 0.009723 0.01128 0.31% Castro::initialize_advance() 10 0.006539 0.009763 0.01111 0.30% Castro::initMFs() 1 0.006717 0.007015 0.0089 0.24% main() 1 0.004124 0.006599 0.007595 0.21% Castro::construct_new_source() 50 0.004706 0.006521 0.007111 0.19% Castro::enforce_min_density() 62 0.004951 0.006113 0.006667 0.18% StateData::define() 4 0.005566 0.005694 0.006451 0.18% Amr::coarseTimeStep() 10 0.00155 0.002587 0.005174 0.14% Castro::swap_state_time_levels() 10 0.00329 0.004333 0.004701 0.13% Castro::finalize_advance() 10 0.003374 0.003452 0.003553 0.10% Castro::finalize_do_advance() 10 0.0005875 0.001693 0.002122 0.06% Castro::buildMetrics() 1 0.001575 0.001628 0.001858 0.05% Amr::timeStep() 10 0.0001853 0.0002501 0.0004924 0.01% Amr::InitAmr() 1 0.0002688 0.0002921 0.0004051 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002827 0.0003013 0.0003189 0.01% Castro::clean_state() 62 0.0001556 0.0001758 0.0001968 0.01% StateDataPhysBCFunct::() 41 0.0001199 0.0001397 0.0001604 0.00% DistributionMapping::LeastUsedCPUs() 1 6.565e-06 0.0001225 0.0001436 0.00% Castro::enforce_consistent_e() 1 7.84e-05 8.98e-05 0.0001067 0.00% Amr::FinalizeInit() 1 3.833e-06 1.626e-05 9.825e-05 0.00% FabArray::ParallelCopy() 41 6.206e-05 8.531e-05 9.525e-05 0.00% Castro::construct_old_source() 50 2.763e-05 7.303e-05 9.181e-05 0.00% Castro::Castro() 1 5.138e-05 6.904e-05 8.708e-05 0.00% Castro::do_new_sources() 10 4.064e-05 7.235e-05 8.409e-05 0.00% FillPatchSingleLevel 41 6.799e-05 7.311e-05 8.025e-05 0.00% Castro::do_old_sources() 10 3.256e-05 6.915e-05 7.947e-05 0.00% Castro::subcycle_advance_ctu() 10 3.907e-05 5.757e-05 7.579e-05 0.00% Castro::construct_old_gravity() 10 3.069e-05 5.452e-05 7.283e-05 0.00% Amr::writeSmallPlotFile() 1 6.177e-05 6.498e-05 6.904e-05 0.00% FabArrayBase::getCPC() 41 4.846e-05 5.694e-05 6.333e-05 0.00% Castro::apply_source_to_state() 20 3.002e-05 4.748e-05 5.843e-05 0.00% Castro::advance() 10 3.435e-05 4.911e-05 5.412e-05 0.00% Castro::construct_new_gravity() 10 3.698e-05 4.443e-05 4.972e-05 0.00% Amr::defBaseLevel() 1 2.498e-05 3.221e-05 4.083e-05 0.00% Castro::enforce_speed_limit() 62 2.122e-05 3.116e-05 3.839e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.784e-05 2.429e-05 3.209e-05 0.00% Castro::post_timestep() 10 1.612e-05 2.347e-05 3.007e-05 0.00% FabArrayBase::CPC::define() 2 2.356e-05 2.604e-05 2.993e-05 0.00% Castro::check_for_nan() 20 1.906e-05 2.504e-05 2.828e-05 0.00% Gravity::swapTimeLevels() 10 4.556e-06 1.253e-05 1.592e-05 0.00% Castro::create_source_corrector() 10 6.664e-06 1.085e-05 1.307e-05 0.00% Castro::computeNewDt() 9 8.095e-06 9.972e-06 1.164e-05 0.00% Gravity::set_mass_offset() 10 6.883e-06 9.703e-06 1.109e-05 0.00% Castro::FluxRegCrseInit 10 6.56e-06 8.459e-06 9.962e-06 0.00% Amr::InitializeInit() 1 6.341e-06 7.65e-06 9.505e-06 0.00% Amr::initSubcycle() 1 7.783e-06 8.211e-06 9.245e-06 0.00% Castro::retry_advance_ctu() 10 3.593e-06 5.481e-06 7.267e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.728e-06 4.979e-06 6.519e-06 0.00% Castro::post_init() 1 3.359e-06 4.105e-06 4.921e-06 0.00% Castro::computeInitialDt() 2 2.938e-06 3.779e-06 4.647e-06 0.00% Castro::post_regrid() 1 1.911e-06 2.764e-06 3.943e-06 0.00% Castro::FluxRegFineAdd() 10 1.706e-06 2.177e-06 2.762e-06 0.00% Amr::init() 1 1.759e-06 2.107e-06 2.757e-06 0.00% Amr::initialInit() 1 1.032e-06 1.631e-06 2.643e-06 0.00% DistributionMapping::Distribute() 1 9.03e-07 1.112e-06 1.268e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.682 3.684 3.685 100.00% Amr::coarseTimeStep() 10 3.474 3.474 3.474 94.27% Amr::timeStep() 10 3.458 3.461 3.462 93.95% Castro::advance() 10 3.443 3.444 3.445 93.48% Castro::subcycle_advance_ctu() 10 3.369 3.371 3.379 91.71% Castro::do_advance_ctu() 10 3.368 3.371 3.379 91.71% Castro::construct_ctu_hydro_source() 10 2.075 2.411 2.53 68.67% Gravity::make_radial_gravity() 21 0.343 0.3557 0.387 10.50% Gravity::get_new_grav_vector() 11 0.2314 0.2355 0.2377 6.45% Castro::construct_old_gravity() 10 0.2 0.2114 0.2342 6.36% Gravity::get_old_grav_vector() 10 0.1991 0.2105 0.2337 6.34% FillPatchIterator::Initialize 41 0.188 0.1987 0.2232 6.06% Castro::construct_new_gravity() 10 0.2069 0.2105 0.2126 5.77% FillPatchSingleLevel 41 0.135 0.1505 0.1953 5.30% Amr::init() 1 0.1928 0.1929 0.1929 5.24% Castro::initialize_do_advance() 10 0.1689 0.1816 0.189 5.13% Amr::initialInit() 1 0.1774 0.1776 0.1777 4.82% FabArray::ParallelCopy() 41 0.09058 0.1086 0.1606 4.36% Amr::InitializeInit() 1 0.06026 0.1012 0.1493 4.05% Amr::defBaseLevel() 1 0.06025 0.1012 0.1492 4.05% Castro::expand_state() 10 0.1253 0.133 0.1387 3.76% FabArray::ParallelCopy_finish() 41 0.04122 0.06274 0.134 3.64% Castro::initData() 1 0.04321 0.08393 0.1304 3.54% Castro::clean_state() 62 0.106 0.1163 0.1196 3.25% Castro::estTimeStep() 21 0.04386 0.08128 0.1195 3.24% Amr::FinalizeInit() 1 0.02811 0.07637 0.1173 3.18% Castro::computeInitialDt() 2 0.002093 0.05015 0.09112 2.47% Castro::computeTemp() 63 0.06332 0.06958 0.07223 1.96% Castro::initialize_advance() 10 0.06036 0.06998 0.0722 1.96% FabArray::setVal() 143 0.05746 0.06883 0.07105 1.93% Castro::do_new_sources() 10 0.05259 0.06298 0.06493 1.76% Castro::reset_internal_energy(MultiFab) 63 0.04614 0.0505 0.05246 1.42% Castro::reset_internal_energy(Fab) 1008 0.04586 0.0502 0.05214 1.42% FabArray::ParallelCopy_nowait() 41 0.02648 0.04576 0.05129 1.39% Castro::do_old_sources() 10 0.03132 0.04509 0.04894 1.33% StateDataPhysBCFunct::() 41 0.03469 0.0419 0.0453 1.23% StateData::FillBoundary(geom) 41 0.03457 0.04176 0.04517 1.23% Castro::normalize_species() 62 0.0385 0.04135 0.04253 1.15% Castro::construct_new_source() 50 0.02431 0.02932 0.03058 0.83% Gravity::interpolate_monopole_grav() 21 0.02528 0.02724 0.02792 0.76% Amr::writePlotFile() 2 0.02557 0.02566 0.02588 0.70% Castro::post_init() 1 0.02551 0.02572 0.02583 0.70% Castro::construct_new_gravity_source() 10 0.01961 0.02279 0.02363 0.64% Castro::post_timestep() 10 0.01472 0.01625 0.0169 0.46% Castro::apply_source_to_state() 20 0.008195 0.01433 0.01655 0.45% MultiFab::Saxpy() 20 0.008165 0.01428 0.0165 0.45% VisMF::Write(FabArray) 2 0.01153 0.01283 0.01539 0.42% FabArray::setDomainBndry() 41 0.004705 0.0111 0.01288 0.35% Castro::check_for_nan() 20 0.009424 0.01127 0.0125 0.34% MultiFab::contains_nan() 20 0.009404 0.01124 0.01247 0.34% Castro::Castro() 1 0.01125 0.01139 0.01225 0.33% Castro::construct_old_source() 50 0.004907 0.01009 0.01172 0.32% Castro::construct_old_gravity_source() 10 0.00488 0.01002 0.01163 0.32% Castro::computeNewDt() 9 0.009162 0.009166 0.009168 0.25% Castro::initMFs() 1 0.006717 0.007015 0.0089 0.24% Castro::enforce_min_density() 62 0.004951 0.006113 0.006667 0.18% AmrLevel::AmrLevel(dm) 1 0.005588 0.005718 0.006476 0.18% StateData::define() 4 0.005566 0.005694 0.006451 0.18% Castro::swap_state_time_levels() 10 0.00329 0.004333 0.004701 0.13% Castro::finalize_advance() 10 0.003385 0.003463 0.003562 0.10% Castro::finalize_do_advance() 10 0.0005875 0.001693 0.002122 0.06% Castro::buildMetrics() 1 0.001693 0.001758 0.002013 0.05% Castro::post_regrid() 1 0.001521 0.00159 0.001654 0.04% Amr::InitAmr() 1 0.0002766 0.0003004 0.000413 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.124e-05 0.0001286 0.0001512 0.00% DistributionMapping::LeastUsedCPUs() 1 6.565e-06 0.0001225 0.0001436 0.00% Castro::enforce_consistent_e() 1 7.84e-05 8.98e-05 0.0001067 0.00% FabArrayBase::getCPC() 41 7.511e-05 8.297e-05 9.326e-05 0.00% Amr::writeSmallPlotFile() 1 6.177e-05 6.498e-05 6.904e-05 0.00% Castro::enforce_speed_limit() 62 2.122e-05 3.116e-05 3.839e-05 0.00% FabArrayBase::CPC::define() 2 2.356e-05 2.604e-05 2.993e-05 0.00% Gravity::swapTimeLevels() 10 4.556e-06 1.253e-05 1.592e-05 0.00% Castro::create_source_corrector() 10 6.664e-06 1.085e-05 1.307e-05 0.00% Gravity::set_mass_offset() 10 6.883e-06 9.703e-06 1.109e-05 0.00% Castro::FluxRegCrseInit 10 6.56e-06 8.459e-06 9.962e-06 0.00% Amr::initSubcycle() 1 7.783e-06 8.211e-06 9.245e-06 0.00% Castro::retry_advance_ctu() 10 3.593e-06 5.481e-06 7.267e-06 0.00% Castro::FluxRegFineAdd() 10 1.706e-06 2.177e-06 2.762e-06 0.00% DistributionMapping::Distribute() 1 9.03e-07 1.112e-06 1.268e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.11-17-gd8bc97f92a1a) finalized