MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.11-19-g0d52da4dfede) initialized Starting run at 20:12:34 UTC on 2022-11-18. Successfully read inputs file ... Castro git describe: 22.11-12-g3b5735e85 AMReX git describe: 22.11-19-g0d52da4df Microphysics git describe: 22.11-30-ge222dd70 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015818227 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.365387554 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.344389279 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.344362127 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.34520474 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.358610474 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.354130123 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.341181694 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.34094684 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.341206539 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.34086234 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.01022752 seconds Ending run at 20:12:37 UTC on 2022-11-18. Run time = 3.675526916 Run time without initialization = 3.494488857 Average number of zones advanced per microsecond: 0.750 Average number of zones advanced per microsecond per rank: 0.094 TinyProfiler total time across processes [min...avg...max]: 3.673 ... 3.675 ... 3.676 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1183 2.4226 2.5325 68.90% Castro::do_advance_ctu() 10 0.03299 0.1424 0.4505 12.26% Gravity::make_radial_gravity() 21 0.344 0.3532 0.3735 10.16% Castro::initData() 1 0.03926 0.07826 0.1147 3.12% FabArray::ParallelCopy_finish() 41 0.04433 0.06211 0.1117 3.04% Castro::estTimeStep() 21 0.03188 0.06989 0.1077 2.93% FabArray::setVal() 143 0.06411 0.07145 0.07386 2.01% Castro::reset_internal_energy(Fab) 1008 0.0493 0.05044 0.05142 1.40% FabArray::ParallelCopy_nowait() 41 0.02972 0.0452 0.05101 1.39% StateData::FillBoundary(geom) 41 0.03509 0.04198 0.04548 1.24% Castro::normalize_species() 62 0.04086 0.04135 0.04198 1.14% FillPatchIterator::Initialize 41 0.0245 0.03631 0.04065 1.11% Gravity::interpolate_monopole_grav() 21 0.02618 0.0274 0.02791 0.76% Castro::construct_new_gravity_source() 10 0.02037 0.02301 0.02416 0.66% Castro::expand_state() 10 0.009996 0.01931 0.02298 0.63% Castro::computeTemp() 63 0.01837 0.01915 0.01979 0.54% Castro::initialize_do_advance() 10 0.01035 0.01761 0.01912 0.52% VisMF::Write(FabArray) 2 0.012 0.01318 0.01735 0.47% MultiFab::Saxpy() 20 0.01064 0.01471 0.01659 0.45% Amr::writePlotFile() 2 0.008953 0.01299 0.01402 0.38% Gravity::get_new_grav_vector() 11 0.007838 0.01153 0.01274 0.35% FabArray::setDomainBndry() 41 0.004981 0.01043 0.01258 0.34% Castro::construct_old_gravity_source() 10 0.004984 0.01032 0.01212 0.33% MultiFab::contains_nan() 20 0.01025 0.01129 0.01205 0.33% Castro::initialize_advance() 10 0.01061 0.01096 0.01182 0.32% Gravity::get_old_grav_vector() 10 0.005775 0.009489 0.01089 0.30% Castro::construct_new_source() 50 0.005007 0.006558 0.007249 0.20% main() 1 0.00441 0.006763 0.007187 0.20% Castro::initMFs() 1 0.006901 0.006937 0.006957 0.19% Castro::enforce_min_density() 62 0.005794 0.006146 0.006396 0.17% StateData::define() 4 0.005646 0.005668 0.005691 0.15% Castro::swap_state_time_levels() 10 0.003439 0.004667 0.005183 0.14% Castro::finalize_advance() 10 0.003473 0.003663 0.003934 0.11% Amr::coarseTimeStep() 10 0.002337 0.002636 0.003015 0.08% Castro::buildMetrics() 1 0.001605 0.001626 0.001663 0.05% Castro::finalize_do_advance() 10 0.0007891 0.001425 0.00161 0.04% Amr::timeStep() 10 0.0001976 0.0002629 0.0004582 0.01% Amr::InitAmr() 1 0.0002825 0.0003083 0.000432 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002878 0.0003022 0.0003298 0.01% Castro::clean_state() 62 0.0001261 0.0001762 0.0001986 0.01% StateDataPhysBCFunct::() 41 9.064e-05 0.0001328 0.0001554 0.00% DistributionMapping::LeastUsedCPUs() 1 7.977e-06 0.0001294 0.0001501 0.00% Castro::construct_old_source() 50 3.553e-05 7.801e-05 0.0001108 0.00% Castro::enforce_consistent_e() 1 7.782e-05 9.067e-05 0.0001082 0.00% Amr::FinalizeInit() 1 3.994e-06 1.757e-05 0.0001072 0.00% FabArray::ParallelCopy() 41 6.896e-05 8.25e-05 9.426e-05 0.00% Castro::do_new_sources() 10 3.824e-05 7.161e-05 9.368e-05 0.00% Castro::Castro() 1 6.782e-05 7.821e-05 8.937e-05 0.00% FillPatchSingleLevel 41 5.447e-05 6.998e-05 8.288e-05 0.00% Castro::do_old_sources() 10 3.515e-05 6.722e-05 8.034e-05 0.00% Amr::writeSmallPlotFile() 1 2.388e-05 6.111e-05 7.62e-05 0.00% Castro::subcycle_advance_ctu() 10 3.875e-05 6.209e-05 7.532e-05 0.00% Castro::construct_old_gravity() 10 3.102e-05 5.534e-05 7.106e-05 0.00% FabArrayBase::getCPC() 41 4.085e-05 5.689e-05 6.458e-05 0.00% Castro::advance() 10 3.376e-05 5.293e-05 6.125e-05 0.00% Castro::apply_source_to_state() 20 3.075e-05 4.601e-05 5.271e-05 0.00% Castro::construct_new_gravity() 10 3.698e-05 4.428e-05 4.903e-05 0.00% Amr::defBaseLevel() 1 2.496e-05 3.134e-05 3.623e-05 0.00% Castro::enforce_speed_limit() 62 2.229e-05 3.061e-05 3.483e-05 0.00% FabArrayBase::CPC::define() 2 2.282e-05 2.541e-05 3.203e-05 0.00% Castro::post_timestep() 10 1.364e-05 2.548e-05 3.107e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.762e-05 2.416e-05 3.049e-05 0.00% Castro::check_for_nan() 20 1.936e-05 2.443e-05 2.808e-05 0.00% Amr::initSubcycle() 1 8.132e-06 1.113e-05 1.831e-05 0.00% Gravity::swapTimeLevels() 10 7.229e-06 1.241e-05 1.57e-05 0.00% Gravity::set_mass_offset() 10 7.263e-06 1.033e-05 1.343e-05 0.00% Castro::create_source_corrector() 10 7.466e-06 1.074e-05 1.286e-05 0.00% Castro::post_init() 1 3.611e-06 5.213e-06 1.093e-05 0.00% Castro::FluxRegCrseInit 10 6.12e-06 8.574e-06 1.035e-05 0.00% Castro::computeNewDt() 9 7.202e-06 9.058e-06 1.023e-05 0.00% Amr::InitializeInit() 1 6.26e-06 7.523e-06 9.232e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.693e-06 5.761e-06 8.371e-06 0.00% Castro::retry_advance_ctu() 10 4.603e-06 5.99e-06 7.712e-06 0.00% Castro::computeInitialDt() 2 3.465e-06 4.098e-06 4.697e-06 0.00% Castro::post_regrid() 1 2.013e-06 2.998e-06 4.593e-06 0.00% Castro::FluxRegFineAdd() 10 2.044e-06 2.292e-06 2.587e-06 0.00% Amr::init() 1 1.862e-06 2.163e-06 2.536e-06 0.00% Amr::initialInit() 1 1.25e-06 1.492e-06 1.859e-06 0.00% DistributionMapping::Distribute() 1 9.29e-07 1.51e-06 1.765e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.673 3.675 3.676 100.00% Amr::coarseTimeStep() 10 3.477 3.477 3.477 94.60% Amr::timeStep() 10 3.464 3.464 3.464 94.25% Castro::advance() 10 3.447 3.448 3.448 93.80% Castro::subcycle_advance_ctu() 10 3.369 3.37 3.375 91.84% Castro::do_advance_ctu() 10 3.369 3.37 3.375 91.83% Castro::construct_ctu_hydro_source() 10 2.118 2.423 2.532 68.90% Gravity::make_radial_gravity() 21 0.344 0.3532 0.3735 10.16% Gravity::get_new_grav_vector() 11 0.2269 0.2324 0.2341 6.37% Castro::construct_old_gravity() 10 0.2024 0.2111 0.2274 6.19% Gravity::get_old_grav_vector() 10 0.2015 0.2102 0.2268 6.17% FillPatchIterator::Initialize 41 0.1897 0.1964 0.2107 5.73% Castro::construct_new_gravity() 10 0.2032 0.2074 0.209 5.68% Castro::initialize_do_advance() 10 0.1647 0.18 0.1867 5.08% FillPatchSingleLevel 41 0.1372 0.1497 0.1812 4.93% Amr::init() 1 0.1805 0.1806 0.1806 4.91% Amr::initialInit() 1 0.1645 0.1647 0.1649 4.49% FabArray::ParallelCopy() 41 0.09437 0.1075 0.1416 3.85% Castro::expand_state() 10 0.1238 0.1324 0.1372 3.73% Amr::InitializeInit() 1 0.06088 0.1001 0.1364 3.71% Amr::defBaseLevel() 1 0.06087 0.1 0.1364 3.71% Castro::initData() 1 0.04327 0.08241 0.1188 3.23% Castro::clean_state() 62 0.1147 0.1167 0.1181 3.21% FabArray::ParallelCopy_finish() 41 0.04433 0.06211 0.1117 3.04% Castro::estTimeStep() 21 0.03188 0.06989 0.1077 2.93% Amr::FinalizeInit() 1 0.02849 0.06468 0.1038 2.82% Castro::computeInitialDt() 2 0.002493 0.03883 0.07802 2.12% Castro::initialize_advance() 10 0.06851 0.0735 0.07519 2.05% FabArray::setVal() 143 0.06411 0.07145 0.07386 2.01% Castro::computeTemp() 63 0.06812 0.06989 0.07103 1.93% Castro::do_new_sources() 10 0.0552 0.06349 0.06517 1.77% Castro::reset_internal_energy(MultiFab) 63 0.0496 0.05074 0.05172 1.41% Castro::reset_internal_energy(Fab) 1008 0.0493 0.05044 0.05142 1.40% FabArray::ParallelCopy_nowait() 41 0.02981 0.04529 0.0511 1.39% Castro::do_old_sources() 10 0.03505 0.04573 0.0493 1.34% StateDataPhysBCFunct::() 41 0.03518 0.04211 0.04562 1.24% StateData::FillBoundary(geom) 41 0.03509 0.04198 0.04548 1.24% Castro::normalize_species() 62 0.04086 0.04135 0.04198 1.14% Castro::construct_new_source() 50 0.02538 0.02957 0.03111 0.85% Gravity::interpolate_monopole_grav() 21 0.02618 0.0274 0.02791 0.76% Amr::writePlotFile() 2 0.02602 0.02617 0.02641 0.72% Castro::post_init() 1 0.02549 0.02576 0.02591 0.70% Castro::construct_new_gravity_source() 10 0.02037 0.02301 0.02416 0.66% VisMF::Write(FabArray) 2 0.012 0.01318 0.01735 0.47% Castro::apply_source_to_state() 20 0.01068 0.01476 0.01665 0.45% MultiFab::Saxpy() 20 0.01064 0.01471 0.01659 0.45% Castro::post_timestep() 10 0.01598 0.01607 0.01617 0.44% FabArray::setDomainBndry() 41 0.004981 0.01043 0.01258 0.34% Castro::construct_old_source() 50 0.00502 0.01039 0.01223 0.33% Castro::construct_old_gravity_source() 10 0.004984 0.01032 0.01212 0.33% Castro::check_for_nan() 20 0.01028 0.01132 0.01208 0.33% MultiFab::contains_nan() 20 0.01025 0.01129 0.01205 0.33% Castro::Castro() 1 0.01171 0.01178 0.01185 0.32% Castro::computeNewDt() 9 0.008939 0.008947 0.008962 0.24% Castro::initMFs() 1 0.006901 0.006937 0.006957 0.19% Castro::enforce_min_density() 62 0.005794 0.006146 0.006396 0.17% AmrLevel::AmrLevel(dm) 1 0.005669 0.005692 0.005715 0.16% StateData::define() 4 0.005646 0.005668 0.005691 0.15% Castro::swap_state_time_levels() 10 0.003439 0.004667 0.005183 0.14% Castro::finalize_advance() 10 0.003483 0.003674 0.003943 0.11% Castro::buildMetrics() 1 0.001729 0.001757 0.001795 0.05% Castro::post_regrid() 1 0.001509 0.001593 0.001653 0.04% Castro::finalize_do_advance() 10 0.0007891 0.001425 0.00161 0.04% Amr::InitAmr() 1 0.0002941 0.0003194 0.0004434 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.26e-05 0.0001367 0.0001575 0.00% DistributionMapping::LeastUsedCPUs() 1 7.977e-06 0.0001294 0.0001501 0.00% Castro::enforce_consistent_e() 1 7.782e-05 9.067e-05 0.0001082 0.00% FabArrayBase::getCPC() 41 7.288e-05 8.23e-05 8.921e-05 0.00% Amr::writeSmallPlotFile() 1 2.388e-05 6.111e-05 7.62e-05 0.00% Castro::enforce_speed_limit() 62 2.229e-05 3.061e-05 3.483e-05 0.00% FabArrayBase::CPC::define() 2 2.282e-05 2.541e-05 3.203e-05 0.00% Amr::initSubcycle() 1 8.132e-06 1.113e-05 1.831e-05 0.00% Gravity::swapTimeLevels() 10 7.229e-06 1.241e-05 1.57e-05 0.00% Gravity::set_mass_offset() 10 7.263e-06 1.033e-05 1.343e-05 0.00% Castro::create_source_corrector() 10 7.466e-06 1.074e-05 1.286e-05 0.00% Castro::FluxRegCrseInit 10 6.12e-06 8.574e-06 1.035e-05 0.00% Castro::retry_advance_ctu() 10 4.603e-06 5.99e-06 7.712e-06 0.00% Castro::FluxRegFineAdd() 10 2.044e-06 2.292e-06 2.587e-06 0.00% DistributionMapping::Distribute() 1 9.29e-07 1.51e-06 1.765e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.11-19-g0d52da4dfede) finalized